Year |
Citation |
Score |
2024 |
Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J, Li Y, Sato I, Wan W, Clark JW, Keating JN, Carlisle EM, Dearden RP, Giles S, Randle E, ... ... Martin FJ, et al. Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature Ecology & Evolution. PMID 38216617 DOI: 10.1038/s41559-023-02299-z |
0.841 |
|
2023 |
Warren WC, Rice ES, Maggs X, Roback E, Keene A, Martin F, Ogeh D, Haggerty L, Carroll RA, McGaugh S, Rohner N. Astyanax mexicanus surface and cavefish chromosome-scale assemblies for trait variation discovery. Biorxiv : the Preprint Server For Biology. PMID 38014157 DOI: 10.1101/2023.11.16.567450 |
0.835 |
|
2023 |
Harrison PW, Amode MR, Austine-Orimoloye O, Azov AG, Barba M, Barnes I, Becker A, Bennett R, Berry A, Bhai J, Bhurji SK, Boddu S, Branco Lins PR, Brooks L, Ramaraju SB, ... ... Martin FJ, et al. Ensembl 2024. Nucleic Acids Research. PMID 37953337 DOI: 10.1093/nar/gkad1049 |
0.862 |
|
2023 |
Rhie A, Nurk S, Cechova M, Hoyt SJ, Taylor DJ, Altemose N, Hook PW, Koren S, Rautiainen M, Alexandrov IA, Allen J, Asri M, Bzikadze AV, Chen NC, Chin CS, ... ... Martin FJ, et al. The complete sequence of a human Y chromosome. Nature. PMID 37612512 DOI: 10.1038/s41586-023-06457-y |
0.787 |
|
2023 |
Campbell LI, Nwezeobi J, van Brunschot SL, Kaweesi T, Seal SE, Swamy RAR, Namuddu A, Maslen GL, Mugerwa H, Armean IM, Haggerty L, Martin FJ, Malka O, Santos-Garcia D, Juravel K, et al. Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. Bmc Genomics. 24: 408. PMID 37468834 DOI: 10.1186/s12864-023-09474-3 |
0.778 |
|
2023 |
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts A, ... ... Martin FJ, et al. A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats. Biorxiv : the Preprint Server For Biology. PMID 37214860 DOI: 10.1101/2023.04.13.536694 |
0.451 |
|
2023 |
Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, ... ... Martin FJ, et al. A draft human pangenome reference. Nature. 617: 312-324. PMID 37165242 DOI: 10.1038/s41586-023-05896-x |
0.778 |
|
2023 |
Stammnitz MR, Gori K, Kwon YM, Harry E, Martin FJ, Billis K, Cheng Y, Baez-Ortega A, Chow W, Comte S, Eggertsson H, Fox S, Hamede R, Jones M, Lazenby B, et al. The evolution of two transmissible cancers in Tasmanian devils. Science (New York, N.Y.). 380: 283-293. PMID 37079675 DOI: 10.1126/science.abq6453 |
0.302 |
|
2023 |
Karawita AC, Cheng Y, Chew KY, Challagulla A, Kraus R, Mueller RC, Tong MZW, Hulme KD, Bielefeldt-Ohmann H, Steele LE, Wu M, Sng J, Noye E, Bruxner TJ, Au GG, ... ... Martin FJ, et al. The swan genome and transcriptome, it is not all black and white. Genome Biology. 24: 13. PMID 36683094 DOI: 10.1186/s13059-022-02838-0 |
0.359 |
|
2022 |
Frankish A, Carbonell-Sala S, Diekhans M, Jungreis I, Loveland JE, Mudge JM, Sisu C, Wright JC, Arnan C, Barnes I, Banerjee A, Bennett R, Berry A, Bignell A, Boix C, ... ... Martin FJ, et al. GENCODE: reference annotation for the human and mouse genomes in 2023. Nucleic Acids Research. PMID 36420896 DOI: 10.1093/nar/gkac1071 |
0.634 |
|
2022 |
Martin FJ, Amode MR, Aneja A, Austine-Orimoloye O, Azov AG, Barnes I, Becker A, Bennett R, Berry A, Bhai J, Bhurji SK, Bignell A, Boddu S, Branco Lins PR, Brooks L, et al. Ensembl 2023. Nucleic Acids Research. PMID 36318249 DOI: 10.1093/nar/gkac958 |
0.85 |
|
2022 |
Low WY, Rosen BD, Ren Y, Bickhart DM, To TH, Martin FJ, Billis K, Sonstegard TS, Sullivan ST, Hiendleder S, Williams JL, Heaton MP, Smith TPL. Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle. Bmc Genomics. 23: 344. PMID 35508966 DOI: 10.1186/s12864-022-08561-1 |
0.397 |
|
2021 |
Dussex N, van der Valk T, Morales HE, Wheat CW, Díez-Del-Molino D, von Seth J, Foster Y, Kutschera VE, Guschanski K, Rhie A, Phillippy AM, Korlach J, Howe K, Chow W, Pelan S, ... ... Martin FJ, et al. Population genomics of the critically endangered kākāpō. Cell Genomics. 1: 100002. PMID 36777713 DOI: 10.1016/j.xgen.2021.100002 |
0.808 |
|
2021 |
Cunningham F, Allen JE, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Austine-Orimoloye O, Azov AG, Barnes I, Bennett R, Berry A, Bhai J, Bignell A, Billis K, Boddu S, ... ... Martin FJ, et al. Ensembl 2022. Nucleic Acids Research. PMID 34791404 DOI: 10.1093/nar/gkab1049 |
0.844 |
|
2021 |
Zhu F, Yin ZT, Wang Z, Smith J, Zhang F, Martin F, Ogeh D, Hincke M, Lin FB, Burt DW, Zhou ZK, Hou SS, Zhao QS, Li XQ, Ding SR, et al. Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication. Nature Communications. 12: 5932. PMID 34635656 DOI: 10.1038/s41467-021-26272-1 |
0.664 |
|
2021 |
De Silva NH, Bhai J, Chakiachvili M, Contreras-Moreira B, Cummins C, Frankish A, Gall A, Genez T, Howe KL, Hunt SE, Martin FJ, Moore B, Ogeh D, Parker A, Parton A, et al. The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data. Nucleic Acids Research. PMID 34634797 DOI: 10.1093/nar/gkab889 |
0.813 |
|
2021 |
Martin FJ, Gall A, Szpak M, Flicek P. Accessing Livestock Resources in Ensembl. Frontiers in Genetics. 12: 650228. PMID 33995484 DOI: 10.3389/fgene.2021.650228 |
0.7 |
|
2021 |
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Martin F, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0 |
0.86 |
|
2020 |
Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong J, Barnes I, Berry A, Bignell A, Boix C, Carbonell Sala S, Cunningham F, ... ... Martin FJ, et al. GENCODE 2021. Nucleic Acids Research. PMID 33270111 DOI: 10.1093/nar/gkaa1087 |
0.636 |
|
2020 |
Howe KL, Achuthan P, Allen J, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Azov AG, Bennett R, Bhai J, Billis K, Boddu S, Charkhchi M, Cummins C, Da Rin Fioretto L, ... ... Martin FJ, et al. Ensembl 2021. Nucleic Acids Research. PMID 33137190 DOI: 10.1093/nar/gkaa942 |
0.857 |
|
2020 |
Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, ... Martin FJ, et al. Publisher Correction: The tuatara genome reveals ancient features of amniote evolution. Nature. PMID 32811988 DOI: 10.1038/S41586-020-2661-6 |
0.46 |
|
2020 |
Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, ... Martin FJ, et al. The tuatara genome reveals ancient features of amniote evolution. Nature. PMID 32760000 DOI: 10.1038/S41586-020-2561-9 |
0.667 |
|
2020 |
Warr A, Affara N, Aken B, Beiki H, Bickhart DM, Billis K, Chow W, Eory L, Finlayson HA, Flicek P, Girón CG, Griffin DK, Hall R, Hannum G, Hourlier T, ... ... Martin FJ, et al. An improved pig reference genome sequence to enable pig genetics and genomics research. Gigascience. 9. PMID 32543654 DOI: 10.1093/Gigascience/Giaa051 |
0.579 |
|
2020 |
Low WY, Tearle R, Liu R, Koren S, Rhie A, Bickhart DM, Rosen BD, Kronenberg ZN, Kingan SB, Tseng E, Thibaud-Nissen F, Martin FJ, Billis K, Ghurye J, Hastie AR, et al. Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle. Nature Communications. 11: 2071. PMID 32350247 DOI: 10.1038/S41467-020-15848-Y |
0.648 |
|
2019 |
Yates AD, Achuthan P, Akanni W, Allen J, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Azov AG, Bennett R, Bhai J, Billis K, Boddu S, Marugán JC, Cummins C, ... ... Martin FJ, et al. Ensembl 2020. Nucleic Acids Research. PMID 31691826 DOI: 10.1093/nar/gkz966 |
0.849 |
|
2019 |
Pettersson ME, Rochus CM, Han F, Chen J, Hill J, Wallerman O, Fan G, Hong X, Xu Q, Zhang H, Liu S, Liu X, Haggerty L, Hunt T, Martin FJ, et al. A chromosome-level assembly of the Atlantic herring genome-detection of a supergene and other signals of selection. Genome Research. PMID 31649060 DOI: 10.1101/Gr.253435.119 |
0.791 |
|
2019 |
Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, ... ... Martin FJ, et al. The comparative genomics and complex population history of baboons. Science Advances. 5: eaau6947. PMID 30854422 DOI: 10.1126/Sciadv.Aau6947 |
0.534 |
|
2018 |
Cunningham F, Achuthan P, Akanni W, Allen J, Amode MR, Armean IM, Bennett R, Bhai J, Billis K, Boddu S, Cummins C, Davidson C, Dodiya KJ, Gall A, Girón CG, ... ... Martin FJ, et al. Ensembl 2019. Nucleic Acids Research. PMID 30407521 DOI: 10.1093/nar/gky1113 |
0.84 |
|
2018 |
Frankish A, Diekhans M, Ferreira AM, Johnson R, Jungreis I, Loveland J, Mudge JM, Sisu C, Wright J, Armstrong J, Barnes I, Berry A, Bignell A, Carbonell Sala S, Chrast J, ... ... Martin FJ, et al. GENCODE reference annotation for the human and mouse genomes. Nucleic Acids Research. PMID 30357393 DOI: 10.1093/Nar/Gky955 |
0.608 |
|
2018 |
Thybert D, Roller M, Navarro FCP, Fiddes I, Streeter I, Feig C, Martin-Galvez D, Kolmogorov M, Janoušek V, Akanni W, Aken B, Aldridge S, Chakrapani V, Chow W, Clarke L, ... ... Martin F, et al. Repeat associated mechanisms of genome evolution and function revealed by theandgenomes. Genome Research. PMID 29563166 DOI: 10.1101/Gr.234096.117 |
0.843 |
|
2017 |
Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, Billis K, Cummins C, Gall A, Girón CG, Gil L, Gordon L, Haggerty L, Haskell E, Hourlier T, ... ... Martin FJ, et al. Ensembl 2018. Nucleic Acids Research. PMID 29155950 DOI: 10.1093/nar/gkx1098 |
0.85 |
|
2017 |
Pujar S, O'Leary NA, Farrell CM, Loveland JE, Mudge JM, Wallin C, Girón CG, Diekhans M, Barnes I, Bennett R, Berry AE, Cox E, Davidson C, Goldfarb T, Gonzalez JM, ... ... Martin FJ, et al. Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation. Nucleic Acids Research. PMID 29126148 DOI: 10.1093/Nar/Gkx1031 |
0.549 |
|
2016 |
Aken BL, Achuthan P, Akanni W, Amode MR, Bernsdorff F, Bhai J, Billis K, Carvalho-Silva D, Cummins C, Clapham P, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, ... ... Martin FJ, et al. Ensembl 2017. Nucleic Acids Research. PMID 27899575 DOI: 10.1093/nar/gkw1104 |
0.858 |
|
2016 |
Aken BL, Ayling S, Barrell D, Clarke L, Curwen V, Fairley S, Fernandez Banet J, Billis K, García Girón C, Hourlier T, Howe K, Kähäri A, Kokocinski F, Martin FJ, Murphy DN, et al. The Ensembl gene annotation system. Database : the Journal of Biological Databases and Curation. 2016. PMID 27337980 DOI: 10.1093/Database/Baw093 |
0.502 |
|
2015 |
Yates A, Akanni W, Amode MR, Barrell D, Billis K, Carvalho-Silva D, Cummins C, Clapham P, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, Janacek SH, ... ... Martin FJ, et al. Ensembl 2016. Nucleic Acids Research. PMID 26687719 DOI: 10.1093/nar/gkv1157 |
0.833 |
|
2015 |
Cunningham F, Amode MR, Barrell D, Beal K, Billis K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, ... ... Martin FJ, et al. Ensembl 2015. Nucleic Acids Research. 43: D662-9. PMID 25352552 DOI: 10.1093/nar/gku1010 |
0.516 |
|
2014 |
Flicek P, Amode MR, Barrell D, Beal K, Billis K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt S, ... ... Martin FJ, et al. Ensembl 2014. Nucleic Acids Research. 42: D749-55. PMID 24316576 DOI: 10.1093/nar/gkt1196 |
0.583 |
|
2009 |
Haggerty LS, Martin FJ, Fitzpatrick DA, McInerney JO. Gene and genome trees conflict at many levels. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2209-19. PMID 19571241 DOI: 10.1098/Rstb.2009.0042 |
0.827 |
|
2009 |
Martin FJ, McInerney JO. Recurring cluster and operon assembly for Phenylacetate degradation genes Bmc Evolutionary Biology. 9. PMID 19208251 DOI: 10.1186/1471-2148-9-36 |
0.592 |
|
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