Zheng Li - Publications

Affiliations: 
2013- University of Arizona, Tucson, AZ 

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kong CH, Li Z, Li FL, Xia XX, Wang P. Chemically Mediated Plant-Plant Interactions: Allelopathy and Allelobiosis. Plants (Basel, Switzerland). 13. PMID 38475470 DOI: 10.3390/plants13050626  0.327
2023 Vasquez YM, Li Z, Xue AZ, Bennett GM. Chromosome-level genome assembly of the aster leafhopper (Macrosteles quadrilineatus) reveals the role of environment and microbial symbiosis in shaping pest insect genome evolution. Molecular Ecology Resources. e13919. PMID 38146900 DOI: 10.1111/1755-0998.13919  0.558
2023 Li Z, Xue AZ, Maeda GP, Li Y, Nabity PD, Moran NA. Phylloxera and aphids show distinct features of genome evolution despite similar reproductive modes. Molecular Biology and Evolution. PMID 38069672 DOI: 10.1093/molbev/msad271  0.399
2023 Li H, Zhu L, Fan R, Li Z, Liu Y, Shaheen A, Nie F, Li C, Liu X, Li Y, Liu W, Yang Y, Guo T, Zhu Y, Bu M, et al. A platform for whole-genome speed introgression from Aegilops tauschii to wheat for breeding future crops. Nature Protocols. PMID 38017137 DOI: 10.1038/s41596-023-00922-8  0.431
2023 Li Z, Xue AZ, Maeda GP, Li Y, Nabity PD, Moran NA. Phylloxera and aphids show distinct features of genome evolution despite similar reproductive modes. Biorxiv : the Preprint Server For Biology. PMID 37693541 DOI: 10.1101/2023.08.28.555181  0.399
2023 Yang L, Harris AJ, Wen F, Li Z, Feng C, Kong H, Kang M. Phylogenomic Analyses Reveal an Allopolyploid Origin of Core Didymocarpinae (Gesneriaceae) Followed by Rapid Radiation. Systematic Biology. PMID 37158589 DOI: 10.1093/sysbio/syad029  0.79
2023 Hoang NV, Sogbohossou EOD, Xiong W, Simpson CJC, Singh P, Walden N, van den Bergh E, Becker FFM, Li Z, Zhu XG, Brautigam A, Weber APM, van Haarst JC, Schijlen EGWM, Hendre PS, et al. The Gynandropsis gynandra genome provides insights into whole-genome duplications and the evolution of C4 photosynthesis in Cleomaceae. The Plant Cell. PMID 36691724 DOI: 10.1093/plcell/koad018  0.392
2023 Li Z, Zhong Z, Wu Z, Pausch P, Al-Shayeb B, Amerasekera J, Doudna JA, Jacobsen SE. Genome editing in plants using the compact editor CasΦ. Proceedings of the National Academy of Sciences of the United States of America. 120: e2216822120. PMID 36652483 DOI: 10.1073/pnas.2216822120  0.439
2022 Yu XQ, Su W, Zhang H, Niu M, Liu X, Li Z, Liu C, Wang HL, Yin W, Xia X. Genome-wide analysis of autophagy-related gene family and PagATG18a enhances salt tolerance by regulating ROS homeostasis in poplar. International Journal of Biological Macromolecules. PMID 36441079 DOI: 10.1016/j.ijbiomac.2022.10.240  0.302
2022 Huang R, Li Z, Shen X, Choi J, Cao Y. The Perspective of Arbuscular Mycorrhizal Symbiosis in Rice Domestication and Breeding. International Journal of Molecular Sciences. 23. PMID 36293238 DOI: 10.3390/ijms232012383  0.351
2022 Li Z, Henawy AR, Halema AA, Fan Q, Duanmu D, Huang R. A Wild Rice Rhizobacterium BRDJ Enhances Nitrogen Use Efficiency in Rice. International Journal of Molecular Sciences. 23. PMID 36142689 DOI: 10.3390/ijms231810769  0.323
2022 Qiao Y, Zhang X, Li Z, Song Y, Sun Z. Assembly and comparative analysis of the complete mitochondrial genome of Bupleurum chinense DC. Bmc Genomics. 23: 664. PMID 36131243 DOI: 10.1186/s12864-022-08892-z  0.357
2022 Marchant DB, Chen G, Cai S, Chen F, Schafran P, Jenkins J, Shu S, Plott C, Webber J, Lovell JT, He G, Sandor L, Williams M, Rajasekar S, Healey A, ... ... Li Z, et al. Dynamic genome evolution in a model fern. Nature Plants. PMID 36050461 DOI: 10.1038/s41477-022-01226-7  0.818
2022 Li Z, Li Y, Xue AZ, Dang V, Renee Holmes V, Spencer Johnston J, Barrick JE, Moran NA. The genomic basis of evolutionary novelties in a leafhopper. Molecular Biology and Evolution. PMID 36026509 DOI: 10.1093/molbev/msac184  0.403
2022 Peng L, Li P, Li H, Zhao W, Wang H, Li Z, Sun L. Sequencing and analysis of the complete mitochondrial genome of . Mitochondrial Dna. Part B, Resources. 7: 873-874. PMID 35692706 DOI: 10.1080/23802359.2022.2076625  0.302
2022 Heckenhauer J, Frandsen PB, Sproul JS, Li Z, Paule J, Larracuente AM, Maughan PJ, Barker MS, Schneider JV, Stewart RJ, Pauls SU. Genome size evolution in the diverse insect order Trichoptera. Gigascience. 11. PMID 35217860 DOI: 10.1093/gigascience/giac011  0.723
2022 Jarvis DE, Maughan PJ, DeTemple J, Mosquera V, Li Z, Barker MS, Johnson LA, Whipple CJ. Chromosome-scale genome assembly of Gilia yorkii enables genetic mapping of floral traits in an inter-species cross. Genome Biology and Evolution. PMID 35106544 DOI: 10.1093/gbe/evac017  0.706
2021 Wang C, Zhang Y, Ding H, Song M, Yin J, Yu H, Li Z, Han L, Zhang Z. Authentication of Species Based on Analysis of Metabolite Profiles. Frontiers in Plant Science. 12: 705446. PMID 34880881 DOI: 10.3389/fpls.2021.705446  0.306
2021 Lu RS, Chen Y, Zhang XY, Feng Y, Comes HP, Li Z, Zheng ZS, Yuan Y, Wang LY, Huang ZJ, Guo Y, Sun GP, Olsen KM, Chen J, Qiu YX. Genome sequencing and transcriptome analyses provide insights into the origin and domestication of water caltrop (Trapa spp., Lythraceae). Plant Biotechnology Journal. PMID 34861095 DOI: 10.1111/pbi.13758  0.432
2021 Wickell D, Kuo LY, Yang HP, Dhabalia Ashok A, Irisarri I, Dadras A, de Vries S, de Vries J, Huang YM, Li Z, Barker MS, Hartwick NT, Michael TP, Li FW. Underwater CAM photosynthesis elucidated by Isoetes genome. Nature Communications. 12: 6348. PMID 34732722 DOI: 10.1038/s41467-021-26644-7  0.734
2021 He J, Li F, Yan X, Cheng Q, Xue R, Yu H, Wang CH, Li Z. Phytochemical Constituents and Biological Activities of Plants from the Genus Cissampelos. Chemistry & Biodiversity. PMID 34387021 DOI: 10.1002/cbdv.202100358  0.301
2021 Wang X, Gao Y, Wu X, Wen X, Li D, Zhou H, Li Z, Liu B, Wei J, Chen F, Chen F, Zhang C, Zhang L, Xia Y. High-quality evergreen azalea genome reveals tandem duplication-facilitated low-altitude adaptability and floral scent evolution. Plant Biotechnology Journal. PMID 34375461 DOI: 10.1111/pbi.13680  0.402
2021 Pan G, Li Z, Huang S, Tao J, Shi Y, Chen A, Li J, Tang H, Chang L, Deng Y, Li D, Zhao L. Genome-wide development of insertion-deletion (InDel) markers for Cannabis and its uses in genetic structure analysis of Chinese germplasm and sex-linked marker identification. Bmc Genomics. 22: 595. PMID 34353285 DOI: 10.1186/s12864-021-07883-w  0.371
2021 Liu Y, Wang B, Shu S, Li Z, Song C, Liu D, Niu Y, Liu J, Zhang J, Liu H, Hu Z, Huang B, Liu X, Liu W, Jiang L, et al. Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids. Nature Communications. 12: 3276. PMID 34078898 DOI: 10.1038/s41467-021-23611-0  0.724
2021 Pan G, Li Z, Yin M, Huang S, Tao J, Chen A, Li J, Tang H, Chang L, Deng Y, Li D, Zhao L. Genome-wide identification, expression, and sequence analysis of CONSTANS-like gene family in cannabis reveals a potential role in plant flowering time regulation. Bmc Plant Biology. 21: 142. PMID 33731002 DOI: 10.1186/s12870-021-02913-x  0.384
2021 Li Z, McKibben MTW, Finch GS, Blischak PD, Sutherland BL, Barker MS. Patterns and Processes of Diploidization in Land Plants. Annual Review of Plant Biology. PMID 33684297 DOI: 10.1146/annurev-arplant-050718-100344  0.695
2021 Marx HE, Jorgensen SA, Wisely E, Li Z, Dlugosch KM, Barker MS. Pilot RNA-seq data from 24 species of vascular plants at Harvard Forest. Applications in Plant Sciences. 9: e11409. PMID 33680580 DOI: 10.1002/aps3.11409  0.734
2020 Yu H, Yang J, Cui H, Li Z, Jia F, Chen J, Li X. Effects of plant density on tillering in the weed grass Aegilops tauschii Coss. and its phytohormonal regulation. Plant Physiology and Biochemistry : Ppb. 157: 70-78. PMID 33091798 DOI: 10.1016/j.plaphy.2020.10.013  0.317
2020 Li Y, Song Q, Zhang Y, Li Z, Guo J, Chen X, Zhang G. Genome-wide identification, characterization, and expression patterns analysis of the SBP-box gene family in wheat (Triticum aestivum L.). Scientific Reports. 10: 17250. PMID 33057145 DOI: 10.1038/s41598-020-74417-x  0.311
2020 Zhu XY, Shen CZ, Liu YF, Chen L, Li Z, He ZQ. A new species of Goniurosaurus from Hainan Island, China based on molecular and morphological data (Squamata: Sauria: Eublepharidae). Zootaxa. 4772: zootaxa.4772.2.6. PMID 33055616 DOI: 10.11646/Zootaxa.4772.2.6  0.303
2020 Pausch P, Al-Shayeb B, Bisom-Rapp E, Tsuchida CA, Li Z, Cress BF, Knott GJ, Jacobsen SE, Banfield JF, Doudna JA. CRISPR-CasΦ from huge phages is a hypercompact genome editor. Science (New York, N.Y.). 369: 333-337. PMID 32675376 DOI: 10.1126/Science.Abb1400  0.325
2020 Lv Q, Qiu J, Liu J, Li Z, Zhang W, Wang Q, Fang J, Pan J, Chen Z, Cheng W, Barker MS, Huang X, Wei X, Cheng K. The Chimonanthus salicifolius genome provides insight into magnoliids evolution and flavonoids biosynthesis. The Plant Journal : For Cell and Molecular Biology. PMID 32524692 DOI: 10.1111/Tpj.14874  0.749
2020 Li Z, Han Y, Niu H, Wang Y, Jiang B, Weng Y. Gynoecy instability in cucumber ( L.) is due to unequal crossover at the copy number variation-dependent () locus. Horticulture Research. 7: 32. PMID 32194968 DOI: 10.1038/s41438-020-0251-2  0.368
2020 Li FW, Nishiyama T, Waller M, Frangedakis E, Keller J, Li Z, Fernandez-Pozo N, Barker MS, Bennett T, Blázquez MA, Cheng S, Cuming AC, de Vries J, de Vries S, Delaux PM, et al. Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts. Nature Plants. 6: 259-272. PMID 32170292 DOI: 10.1038/S41477-020-0618-2  0.791
2020 Li Z, Liu D, Xia Y, Li Z, Jing D, Du J, Niu N, Ma S, Wang J, Song Y, Yang Z, Zhang G. Identification of the WUSCHEL-Related Homeobox (WOX) Gene Family, and Interaction and Functional Analysis of TaWOX9 and TaWUS in Wheat. International Journal of Molecular Sciences. 21. PMID 32111029 DOI: 10.3390/ijms21051581  0.386
2020 Li Z, Barker MS. Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions. Gigascience. 9. PMID 32043527 DOI: 10.1093/Gigascience/Giaa004  0.749
2019 Li Z, Liu D, Xia Y, Li Z, Niu N, Ma S, Wang J, Song Y, Zhang G. Identification and Functional Analysis of the CLAVATA3/EMBRYO SURROUNDING REGION (CLE) Gene Family in Wheat. International Journal of Molecular Sciences. 20. PMID 31484454 DOI: 10.3390/ijms20174319  0.306
2019 Li Z, Tiley GP, Rundell RJ, Barker MS. Reply to Nakatani and McLysaght: Analyzing deep duplication events. Proceedings of the National Academy of Sciences of the United States of America. PMID 30674658 DOI: 10.1073/Pnas.1819227116  0.798
2018 Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, et al. Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nature Plants. PMID 29967517 DOI: 10.1038/S41477-018-0188-8  0.784
2018 Landis JB, Soltis DE, Li Z, Marx HE, Barker MS, Tank DC, Soltis PS. Impact of whole-genome duplication events on diversification rates in angiosperms. American Journal of Botany. PMID 29719043 DOI: 10.1002/Ajb2.1060  0.824
2018 Li Z, Tiley GP, Galuska SR, Reardon CR, Kidder TI, Rundell RJ, Barker MS. Multiple large-scale gene and genome duplications during the evolution of hexapods. Proceedings of the National Academy of Sciences of the United States of America. PMID 29674453 DOI: 10.1073/Pnas.1710791115  0.833
2017 Mandáková T, Li Z, Barker MS, Lysak MA. Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention. The Plant Journal : For Cell and Molecular Biology. PMID 28370611 DOI: 10.1111/Tpj.13553  0.771
2017 Sun Z, Li Z, Huang J, Zheng B, Zhang L, Wang Z. Genome-wide comparative analysis of LEAFY promoter sequence in angiosperms. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 23: 23-33. PMID 28250581 DOI: 10.1007/s12298-016-0393-8  0.346
2016 Barker MS, Li Z, Kidder TI, Reardon CR, Lai Z, Oliveira LO, Scascitelli M, Rieseberg LH. Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae. American Journal of Botany. PMID 27313199 DOI: 10.3732/Ajb.1600113  0.726
2015 Li Z, Baniaga AE, Sessa EB, Scascitelli M, Graham SW, Rieseberg LH, Barker MS. Early genome duplications in conifers and other seed plants. Science Advances. 1: e1501084. PMID 26702445 DOI: 10.1126/Sciadv.1501084  0.804
2015 Barker MS, Arrigo N, Baniaga AE, Li Z, Levin DA. On the relative abundance of autopolyploids and allopolyploids. The New Phytologist. PMID 26439879 DOI: 10.1111/Nph.13698  0.715
2015 Huang N, Wen Y, Guo X, Li Z, Dai J, Ni B, Yu J, Lin Y, Zhou W, Yao B, Jiang Y, Sha J, Conrad DF, Hu Z. A Screen for Genomic Disorders of Infertility Identifies MAST2 Duplications Associated with Non-Obstructive Azoospermia in Humans. Biology of Reproduction. PMID 26203179 DOI: 10.1095/Biolreprod.115.131185  0.376
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