| Year |
Citation |
Score |
| 2019 |
Colibus L, Roine E, Walter TS, Ilca SL, Wang X, Wang N, Roseman AM, Bamford D, Huiskonen JT, Stuart DI. Assembly of complex viruses exemplified by a halophilic euryarchaeal virus. Nature Communications. 10: 1456. PMID 30926810 DOI: 10.1038/S41467-019-09451-Z |
0.372 |
|
| 2018 |
Atanasova NS, Heiniö CH, Demina TA, Bamford DH, Oksanen HM. The Unexplored Diversity of Pleolipoviruses: The Surprising Case of Two Viruses with Identical Major Structural Modules. Genes. 9. PMID 29495629 DOI: 10.3390/genes9030131 |
0.311 |
|
| 2016 |
Hanhijärvi KJ, Ziedaite G, Bamford DH, Hæggström E, Poranen MM. Single-molecule measurements of viral ssRNA packaging. Rna (New York, N.Y.). PMID 27803153 DOI: 10.1261/rna.057471.116 |
0.372 |
|
| 2016 |
Demina TA, Pietilä MK, Svirskaitė J, Ravantti JJ, Atanasova NS, Bamford DH, Oksanen HM. Archaeal Haloarcula californiae Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments. Mbio. 7. PMID 27435460 DOI: 10.1128/mBio.00699-16 |
0.332 |
|
| 2015 |
Liu Y, Wang J, Liu Y, Wang Y, Zhang Z, Oksanen HM, Bamford DH, Chen X. Identification and characterization of SNJ2, the first temperate pleolipovirus integrating into the genome of the SNJ1-lysogenic archaeal strain. Molecular Microbiology. PMID 26331239 DOI: 10.1111/mmi.13204 |
0.311 |
|
| 2014 |
Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W. A structural model of the genome packaging process in a membrane-containing double stranded DNA virus. Plos Biology. 12: e1002024. PMID 25514469 DOI: 10.1371/Journal.Pbio.1002024 |
0.357 |
|
| 2013 |
Sun X, Pirttimaa MJ, Bamford DH, Poranen MM. Rescue of maturation off-pathway products in the assembly of Pseudomonas phage φ 6. Journal of Virology. 87: 13279-86. PMID 24089550 DOI: 10.1128/JVI.02285-13 |
0.343 |
|
| 2013 |
Peralta B, Gil-Carton D, Castaño-Díez D, Bertin A, Boulogne C, Oksanen HM, Bamford DH, Abrescia NG. Mechanism of membranous tunnelling nanotube formation in viral genome delivery. Plos Biology. 11: e1001667. PMID 24086111 DOI: 10.1371/journal.pbio.1001667 |
0.314 |
|
| 2013 |
El Omari K, Meier C, Kainov D, Sutton G, Grimes JM, Poranen MM, Bamford DH, Tuma R, Stuart DI, Mancini EJ. Tracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution. Nucleic Acids Research. 41: 9396-410. PMID 23939620 DOI: 10.1093/nar/gkt713 |
0.366 |
|
| 2013 |
El Omari K, Sutton G, Ravantti JJ, Zhang H, Walter TS, Grimes JM, Bamford DH, Stuart DI, Mancini EJ. Plate tectonics of virus shell assembly and reorganization in phage φ8, a distant relative of mammalian reoviruses. Structure (London, England : 1993). 21: 1384-95. PMID 23891291 DOI: 10.1016/j.str.2013.06.017 |
0.311 |
|
| 2013 |
SenÄilo A, Jacobs-Sera D, Russell DA, Ko CC, Bowman CA, Atanasova NS, Österlund E, Oksanen HM, Bamford DH, Hatfull GF, Roine E, Hendrix RW. Snapshot of haloarchaeal tailed virus genomes. Rna Biology. 10: 803-16. PMID 23470522 DOI: 10.4161/Rna.24045 |
0.317 |
|
| 2013 |
Romanovskaya A, Sarin LP, Bamford DH, Poranen MM. High-throughput purification of double-stranded RNA molecules using convective interaction media monolithic anion exchange columns. Journal of Chromatography. A. 1278: 54-60. PMID 23332782 DOI: 10.1016/j.chroma.2012.12.050 |
0.304 |
|
| 2013 |
Bahar MW, Sarin LP, Graham SC, Pang J, Bamford DH, Stuart DI, Grimes JM. Structure of a VP1-VP3 complex suggests how birnaviruses package the VP1 polymerase. Journal of Virology. 87: 3229-36. PMID 23283942 DOI: 10.1128/JVI.02939-12 |
0.368 |
|
| 2013 |
Dulin D, Vilfan ID, Berghuis BA, Hage S, Bamford DH, Poranen M, Depken M, Dekker NH. Backtracking and Other Off-Path Pauses Control the Dynamic of Viral RNA Dependent RNA Polymerases Biophysical Journal. 104: 364a. DOI: 10.1016/J.Bpj.2012.11.2022 |
0.355 |
|
| 2012 |
Romanovskaya A, Paavilainen H, Nygårdas M, Bamford DH, Hukkanen V, Poranen MM. Enzymatically produced pools of canonical and Dicer-substrate siRNA molecules display comparable gene silencing and antiviral activities against herpes simplex virus. Plos One. 7: e51019. PMID 23226452 DOI: 10.1371/journal.pone.0051019 |
0.316 |
|
| 2012 |
Sun X, Bamford DH, Poranen MM. Probing, by self-assembly, the number of potential binding sites for minor protein subunits in the procapsid of double-stranded RNA bacteriophage Φ6. Journal of Virology. 86: 12208-16. PMID 22933292 DOI: 10.1128/JVI.01505-12 |
0.342 |
|
| 2012 |
Zhang Z, Liu Y, Wang S, Yang D, Cheng Y, Hu J, Chen J, Mei Y, Shen P, Bamford DH, Chen X. Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205. Virology. 434: 233-41. PMID 22784791 DOI: 10.1016/J.Virol.2012.05.036 |
0.348 |
|
| 2012 |
Sarin LP, Wright S, Chen Q, Degerth LH, Stuart DI, Grimes JM, Bamford DH, Poranen MM. The C-terminal priming domain is strongly associated with the main body of bacteriophage ϕ6 RNA-dependent RNA polymerase. Virology. 432: 184-93. PMID 22770923 DOI: 10.1016/j.virol.2012.05.035 |
0.302 |
|
| 2012 |
Sarin LP, Hirvonen JJ, Laurinmäki P, Butcher SJ, Bamford DH, Poranen MM. Bacteriophage ϕ6 nucleocapsid surface protein 8 interacts with virus-specific membrane vesicles containing major envelope protein 9. Journal of Virology. 86: 5376-9. PMID 22379079 DOI: 10.1128/JVI.00172-12 |
0.348 |
|
| 2012 |
Poranen MM, Bamford DH. Assembly of large icosahedral double-stranded RNA viruses. Advances in Experimental Medicine and Biology. 726: 379-402. PMID 22297523 DOI: 10.1007/978-1-4614-0980-9_17 |
0.302 |
|
| 2012 |
Wright S, Poranen MM, Bamford DH, Stuart DI, Grimes JM. Noncatalytic ions direct the RNA-dependent RNA polymerase of bacterial double-stranded RNA virus ϕ6 from de novo initiation to elongation. Journal of Virology. 86: 2837-49. PMID 22205747 DOI: 10.1128/JVI.05168-11 |
0.323 |
|
| 2012 |
Dulin D, Vilfan I, Depken M, Hage S, Kamping W, Poranen M, Bamford D, Dekker NH. A Magnetic Tweezers Study of a RNA-Dependant RNA Polymerase Biophysical Journal. 102: 286a. DOI: 10.1016/J.Bpj.2011.11.1582 |
0.448 |
|
| 2011 |
Graham SC, Sarin LP, Bahar MW, Myers RA, Stuart DI, Bamford DH, Grimes JM. The N-terminus of the RNA polymerase from infectious pancreatic necrosis virus is the determinant of genome attachment. Plos Pathogens. 7: e1002085. PMID 21731487 DOI: 10.1371/journal.ppat.1002085 |
0.374 |
|
| 2010 |
Lee HC, Aalto AP, Yang Q, Chang SS, Huang G, Fisher D, Cha J, Poranen MM, Bamford DH, Liu Y. The DNA/RNA-dependent RNA polymerase QDE-1 generates aberrant RNA and dsRNA for RNAi in a process requiring replication protein A and a DNA helicase. Plos Biology. 8. PMID 20957187 DOI: 10.1371/journal.pbio.1000496 |
0.351 |
|
| 2010 |
Aalto AP, Poranen MM, Grimes JM, Stuart DI, Bamford DH. In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa. The Journal of Biological Chemistry. 285: 29367-74. PMID 20647305 DOI: 10.1074/jbc.M110.139121 |
0.314 |
|
| 2010 |
Cvirkaite-Krupovic V, Poranen MM, Bamford DH. Phospholipids act as secondary receptor during the entry of the enveloped, double-stranded RNA bacteriophage phi6. The Journal of General Virology. 91: 2116-20. PMID 20427561 DOI: 10.1099/vir.0.020305-0 |
0.319 |
|
| 2010 |
Krupovic M, Forterre P, Bamford DH. Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. Journal of Molecular Biology. 397: 144-60. PMID 20109464 DOI: 10.1016/j.jmb.2010.01.037 |
0.327 |
|
| 2010 |
Roine E, Kukkaro P, Paulin L, Laurinavicius S, Domanska A, Somerharju P, Bamford DH. New, closely related haloarchaeal viral elements with different nucleic Acid types. Journal of Virology. 84: 3682-9. PMID 20089654 DOI: 10.1128/JVI.01879-09 |
0.349 |
|
| 2010 |
Vilfan ID, Poranen MM, Bamford DH, Dekker N. RNA-Dependent RNA Pausing or Taking a Long Coffee Break Biophysical Journal. 98: 68a. DOI: 10.1016/J.Bpj.2009.12.388 |
0.331 |
|
| 2010 |
Ziedaite G, Wallin A, Ojala H, Hanhijärvi K, Haeggström E, Bamford D. DNA Polymerization in Optical Tweezers Biophysical Journal. 98: 67a. DOI: 10.1016/J.Bpj.2009.12.381 |
0.359 |
|
| 2009 |
Jalasvuori M, Jaatinen ST, Laurinavicius S, Ahola-Iivarinen E, Kalkkinen N, Bamford DH, Bamford JK. The closest relatives of icosahedral viruses of thermophilic bacteria are among viruses and plasmids of the halophilic archaea. Journal of Virology. 83: 9388-97. PMID 19587059 DOI: 10.1128/JVI.00869-09 |
0.351 |
|
| 2009 |
Nygårdas M, Vuorinen T, Aalto AP, Bamford DH, Hukkanen V. Inhibition of coxsackievirus B3 and related enteroviruses by antiviral short interfering RNA pools produced using phi6 RNA-dependent RNA polymerase. The Journal of General Virology. 90: 2468-73. PMID 19553393 DOI: 10.1099/vir.0.011338-0 |
0.315 |
|
| 2009 |
Krupovic M, Ravantti JJ, Bamford DH. Geminiviruses: a tale of a plasmid becoming a virus. Bmc Evolutionary Biology. 9: 112. PMID 19460138 DOI: 10.1186/1471-2148-9-112 |
0.347 |
|
| 2009 |
Pietilä MK, Roine E, Paulin L, Kalkkinen N, Bamford DH. An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Molecular Microbiology. 72: 307-19. PMID 19298373 DOI: 10.1111/j.1365-2958.2009.06642.x |
0.305 |
|
| 2009 |
Ziedaite G, Kivelä HM, Bamford JK, Bamford DH. Purified membrane-containing procapsids of bacteriophage PRD1 package the viral genome. Journal of Molecular Biology. 386: 637-47. PMID 19150363 DOI: 10.1016/j.jmb.2008.12.068 |
0.348 |
|
| 2009 |
Sarin LP, Poranen MM, Lehti NM, Ravantti JJ, Koivunen MRL, Aalto AP, Van dijk AA, Stuart DI, Grimes JM, Bamford DH. Insights into the pre-initiation events of bacteriophage φ6 RNA-dependent RNA polymerase: Towards the assembly of a productive binary complex Nucleic Acids Research. 37: 1182-1192. PMID 19129226 DOI: 10.1093/nar/gkn1035 |
0.307 |
|
| 2009 |
Wallin AE, Ojala H, Ziedaite G, Degerth L, Bamford D, Haeggström E. High-resolution optical tweezers for investigating DNA-binding/translocating molecular motors Proceedings of Spie. 7400: 740007. DOI: 10.1117/12.826470 |
0.374 |
|
| 2009 |
Vilfan ID, Kamping W, Candelli A, Hage S, Aalto AP, Poranen MM, Bamford DH, Dekker NH. Visualizing an RNA-dependent RNA Polymerase at Work: Polymerization And Strand-switching Biophysical Journal. 96: 367a. DOI: 10.1016/J.Bpj.2008.12.1978 |
0.336 |
|
| 2008 |
Vilfan ID, Candelli A, Hage S, Aalto AP, Poranen MM, Bamford DH, Dekker NH. Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate. Nucleic Acids Research. 36: 7059-67. PMID 18986997 DOI: 10.1093/Nar/Gkn836 |
0.303 |
|
| 2008 |
Poranen MM, Butcher SJ, Simonov VM, Laurinmäki P, Bamford DH. Roles of the minor capsid protein P7 in the assembly and replication of double-stranded RNA bacteriophage phi6. Journal of Molecular Biology. 383: 529-38. PMID 18793644 DOI: 10.1016/j.jmb.2008.08.082 |
0.344 |
|
| 2008 |
Poranen MM, Koivunen MR, Bamford DH. Nontemplated terminal nucleotidyltransferase activity of double-stranded RNA bacteriophage phi6 RNA-dependent RNA polymerase. Journal of Virology. 82: 9254-64. PMID 18614640 DOI: 10.1128/JVI.01044-08 |
0.384 |
|
| 2007 |
Karhu NJ, Ziedaite G, Bamford DH, Bamford JK. Efficient DNA packaging of bacteriophage PRD1 requires the unique vertex protein P6. Journal of Virology. 81: 2970-9. PMID 17202207 DOI: 10.1128/JVI.02211-06 |
0.31 |
|
| 2006 |
Salgado PS, Koivunen MRL, Makeyev EV, Bamford DH, Stuart DI, Grimes JM. The structure of an RNAi polymerase links RNA silencing and transcription Plos Biology. 4. PMID 17147473 DOI: 10.1371/journal.pbio.0040434 |
0.312 |
|
| 2006 |
Ruokoranta TM, Grahn AM, Ravantti JJ, Poranen MM, Bamford DH. Complete genome sequence of the broad host range single-stranded RNA phage PRR1 places it in the Levivirus genus with characteristics shared with Alloleviviruses. Journal of Virology. 80: 9326-30. PMID 16940544 DOI: 10.1128/JVI.01005-06 |
0.341 |
|
| 2006 |
Huiskonen JT, de Haas F, Bubeck D, Bamford DH, Fuller SD, Butcher SJ. Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging. Structure (London, England : 1993). 14: 1039-48. PMID 16765897 DOI: 10.1016/J.Str.2006.03.018 |
0.407 |
|
| 2005 |
Poranen MM, Tuma R, Bamford DH. Assembly of double-stranded RNA bacteriophages. Advances in Virus Research. 64: 15-43. PMID 16139591 DOI: 10.1016/S0065-3527(05)64002-X |
0.316 |
|
| 2005 |
Bamford DH, Ravantti JJ, Rönnholm G, Laurinavicius S, Kukkaro P, Dyall-Smith M, Somerharju P, Kalkkinen N, Bamford JK. Constituents of SH1, a novel lipid-containing virus infecting the halophilic euryarchaeon Haloarcula hispanica. Journal of Virology. 79: 9097-107. PMID 15994804 DOI: 10.1128/JVI.79.14.9097-9107.2005 |
0.31 |
|
| 2005 |
Saren AM, Ravantti JJ, Benson SD, Burnett RM, Paulin L, Bamford DH, Bamford JK. A snapshot of viral evolution from genome analysis of the tectiviridae family. Journal of Molecular Biology. 350: 427-40. PMID 15946683 DOI: 10.1016/J.Jmb.2005.04.059 |
0.319 |
|
| 2005 |
Strömsten NJ, Bamford DH, Bamford JK. In vitro DNA packaging of PRD1: a common mechanism for internal-membrane viruses. Journal of Molecular Biology. 348: 617-29. PMID 15826659 DOI: 10.1016/J.JMB.2005.03.002 |
0.368 |
|
| 2005 |
Laurila MRL, Salgado PS, Stuart DI, Grimes JM, Bamford DH. Back-priming mode of φ6 RNA-dependent RNA polymerase Journal of General Virology. 86: 521-526. PMID 15659773 DOI: 10.1099/vir.0.80492-0 |
0.303 |
|
| 2004 |
Kainov DE, Lísal J, Bamford DH, Tuma R. Packaging motor from double-stranded RNA bacteriophage phi12 acts as an obligatory passive conduit during transcription. Nucleic Acids Research. 32: 3515-21. PMID 15247341 DOI: 10.1093/NAR/GKH680 |
0.344 |
|
| 2004 |
van Dijk AA, Makeyev EV, Bamford DH. Initiation of viral RNA-dependent RNA polymerization. The Journal of General Virology. 85: 1077-1093. PMID 15105525 DOI: 10.1099/VIR.0.19731-0 |
0.314 |
|
| 2004 |
Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM. The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure (London, England : 1993). 12: 307-16. PMID 14962391 DOI: 10.1016/j.str.2004.01.012 |
0.317 |
|
| 2003 |
Lísal J, Kainov DE, Bamford DH, Thomas GJ, Tuma R. Enzymatic mechanism of RNA translocation in double-stranded RNA bacteriophages. The Journal of Biological Chemistry. 279: 1343-50. PMID 14530266 DOI: 10.1074/JBC.M309587200 |
0.333 |
|
| 2003 |
Kainov DE, Pirttimaa M, Tuma R, Butcher SJ, Thomas GJ, Bamford DH, Makeyev EV. RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein. The Journal of Biological Chemistry. 278: 48084-91. PMID 12966097 DOI: 10.1074/jbc.M306928200 |
0.357 |
|
| 2003 |
Strömsten NJ, Bamford DH, Bamford JK. The unique vertex of bacterial virus PRD1 is connected to the viral internal membrane. Journal of Virology. 77: 6314-21. PMID 12743288 DOI: 10.1128/JVI.77.11.6314-6321.2003 |
0.315 |
|
| 2003 |
Kainov DE, Butcher SJ, Bamford DH, Tuma R. Conserved intermediates on the assembly pathway of double-stranded RNA bacteriophages. Journal of Molecular Biology. 328: 791-804. PMID 12729755 DOI: 10.1016/S0022-2836(03)00322-X |
0.375 |
|
| 2003 |
Makeyev EV, Bamford DH. Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes. Molecular Cell. 10: 1417-27. PMID 12504016 DOI: 10.1016/S1097-2765(02)00780-3 |
0.316 |
|
| 2003 |
Yang H, Makeyev EV, Butcher SJ, Gaidelyte A, Bamford DH. Two distinct mechanisms ensure transcriptional polarity in double-stranded RNA bacteriophages. Journal of Virology. 77: 1195-203. PMID 12502836 DOI: 10.1128/JVI.77.2.1195-1203.2003 |
0.363 |
|
| 2002 |
Benevides JM, Juuti JT, Tuma R, Bamford DH, Thomas GJ. Characterization of subunit-specific interactions in a double-stranded RNA virus: Raman difference spectroscopy of the phi6 procapsid. Biochemistry. 41: 11946-53. PMID 12356294 DOI: 10.1021/BI0201623 |
0.332 |
|
| 2002 |
Pirttimaa MJ, Paatero AO, Frilander MJ, Bamford DH. Nonspecific nucleoside triphosphatase P4 of double-stranded RNA bacteriophage phi6 is required for single-stranded RNA packaging and transcription. Journal of Virology. 76: 10122-7. PMID 12239286 DOI: 10.1128/Jvi.76.20.10122-10127.2002 |
0.652 |
|
| 2002 |
Bamford DH, Burnett RM, Stuart DI. Evolution of viral structure. Theoretical Population Biology. 61: 461-70. PMID 12167365 DOI: 10.1006/Tpbi.2002.1591 |
0.306 |
|
| 2002 |
Grahn AM, Daugelavicius R, Bamford DH. The small viral membrane-associated protein P32 is involved in bacteriophage PRD1 DNA entry. Journal of Virology. 76: 4866-72. PMID 11967303 DOI: 10.1128/JVI.76.10.4866-4872.2002 |
0.329 |
|
| 2002 |
Laurila MR, Makeyev EV, Bamford DH. Bacteriophage phi 6 RNA-dependent RNA polymerase: molecular details of initiating nucleic acid synthesis without primer. The Journal of Biological Chemistry. 277: 17117-24. PMID 11877396 DOI: 10.1074/JBC.M111220200 |
0.322 |
|
| 2001 |
Rydman PS, Bamford JK, Bamford DH. A minor capsid protein P30 is essential for bacteriophage PRD1 capsid assembly. Journal of Molecular Biology. 313: 785-95. PMID 11697904 DOI: 10.1006/JMBI.2001.5068 |
0.303 |
|
| 2001 |
Yang H, Makeyev EV, Bamford DH. Comparison of polymerase subunits from double-stranded RNA bacteriophages. Journal of Virology. 75: 11088-95. PMID 11602748 DOI: 10.1128/JVI.75.22.11088-11095.2001 |
0.379 |
|
| 2001 |
Makeyev EV, Bamford DH. Primer-independent RNA sequencing with bacteriophage phi6 RNA polymerase and chain terminators. Rna (New York, N.Y.). 7: 774-81. PMID 11350041 DOI: 10.1017/S1355838201002060 |
0.349 |
|
| 2001 |
Butcher SJ, Grimes JM, Makeyev EV, Bamford DH, Stuart DI. A mechanism for initiating RNA-dependent RNA polymerization. Nature. 410: 235-40. PMID 11242087 DOI: 10.1038/35065653 |
0.357 |
|
| 2001 |
Makeyev EV, Bamford DH. The polymerase subunit of a dsRNA virus plays a central role in the regulation of viral RNA metabolism. The Embo Journal. 19: 6275-84. PMID 11080173 DOI: 10.1093/emboj/19.22.6275 |
0.399 |
|
| 2000 |
Rydman PS, Bamford DH. Bacteriophage PRD1 DNA entry uses a viral membrane-associated transglycosylase activity. Molecular Microbiology. 37: 356-63. PMID 10931330 DOI: 10.1046/J.1365-2958.2000.01996.X |
0.301 |
|
| 2000 |
Pirttimaa MJ, Bamford DH. RNA secondary structures of the bacteriophage phi6 packaging regions. Rna (New York, N.Y.). 6: 880-9. PMID 10864045 DOI: 10.1017/S1355838200992598 |
0.381 |
|
| 2000 |
Makeyev EV, Bamford DH. Replicase activity of purified recombinant protein P2 of double-stranded RNA bacteriophage phi6. The Embo Journal. 19: 124-33. PMID 10619851 DOI: 10.1093/emboj/19.1.124 |
0.389 |
|
| 2000 |
de Haas F, Paatero AO, Mindich L, Bamford DH, Fuller SD. A symmetry mismatch at the site of RNA packaging in the polymerase complex of dsRNA bacteriophage phi6. Journal of Molecular Biology. 294: 357-72. PMID 10610764 DOI: 10.1006/JMBI.1999.3260 |
0.339 |
|
| 2000 |
Grimes JM, Butcher S, Makeyev E, Bamford D, Stuart DI. The architecture and function of the polymerase of a dsRNA virus Acta Crystallographica Section a Foundations of Crystallography. 56: s99-s99. DOI: 10.1107/S0108767300022686 |
0.303 |
|
| 1999 |
Poranen MM, Bamford DH. Packaging and replication regulation revealed by chimeric genome segments of double-stranded RNA bacteriophage phi6. Rna (New York, N.Y.). 5: 446-54. PMID 10094312 DOI: 10.1017/S1355838299981876 |
0.447 |
|
| 1998 |
Paatero AO, Mindich L, Bamford DH. Mutational analysis of the role of nucleoside triphosphatase P4 in the assembly of the RNA polymerase complex of bacteriophage phi6. Journal of Virology. 72: 10058-65. PMID 9811745 DOI: 10.1128/JVI.72.12.10058-10065.1998 |
0.334 |
|
| 1998 |
Juuti JT, Bamford DH, Tuma R, Thomas GJ. Structure and NTPase activity of the RNA-translocating protein (P4) of bacteriophage phi 6. Journal of Molecular Biology. 279: 347-59. PMID 9642042 DOI: 10.1006/JMBI.1998.1772 |
0.31 |
|
| 1997 |
Butcher SJ, Dokland T, Ojala PM, Bamford DH, Fuller SD. Intermediates in the assembly pathway of the double-stranded RNA virus phi6. The Embo Journal. 16: 4477-87. PMID 9250692 DOI: 10.1093/Emboj/16.14.4477 |
0.368 |
|
| 1997 |
Juuti JT, Bamford DH. Protein P7 of phage phi6 RNA polymerase complex, acquiring of RNA packaging activity by in vitro assembly of the purified protein onto deficient particles. Journal of Molecular Biology. 266: 891-900. PMID 9086268 DOI: 10.1006/jmbi.1996.0817 |
0.356 |
|
| 1995 |
Ojala PM, Bamford DH. In vitro transcription of the double-stranded RNA bacteriophage phi 6 is influenced by purine NTPs and calcium. Virology. 207: 400-8. PMID 7886944 DOI: 10.1006/viro.1995.1099 |
0.362 |
|
| 1995 |
Frilander M, Bamford DH. In vitro packaging of the single-stranded RNA genomic precursors of the segmented double-stranded RNA bacteriophage phi 6: the three segments modulate each other's packaging efficiency. Journal of Molecular Biology. 246: 418-28. PMID 7877165 DOI: 10.1006/Jmbi.1994.0096 |
0.644 |
|
| 1995 |
Juuti JT, Bamford DH. RNA binding, packaging and polymerase activities of the different incomplete polymerase complex particles of dsRNA bacteriophage phi 6. Journal of Molecular Biology. 249: 545-54. PMID 7783210 DOI: 10.1006/jmbi.1995.0317 |
0.412 |
|
| 1995 |
van Dijk AA, Frilander M, Bamford DH. Differentiation between minus- and plus-strand synthesis: polymerase activity of dsRNA bacteriophage phi 6 in an in vitro packaging and replication system. Virology. 211: 320-3. PMID 7645229 DOI: 10.1006/Viro.1995.1409 |
0.66 |
|
| 1995 |
Haase J, Lurz R, Grahn AM, Bamford DH, Lanka E. Bacterial conjugation mediated by plasmid RP4: RSF1010 mobilization, donor-specific phage propagation, and pilus production require the same Tra2 core components of a proposed DNA transport complex. Journal of Bacteriology. 177: 4779-91. PMID 7642506 DOI: 10.1128/Jb.177.16.4779-4791.1995 |
0.339 |
|
| 1995 |
Paatero AO, Syväoja JE, Bamford DH. Double-stranded RNA bacteriophage phi 6 protein P4 is an unspecific nucleoside triphosphatase activated by calcium ions. Journal of Virology. 69: 6729-34. PMID 7474083 DOI: 10.1128/jvi.69.11.6729-6734.1995 |
0.336 |
|
| 1994 |
Grahn AM, Bamford JK, O'Neill MC, Bamford DH. Functional organization of the bacteriophage PRD1 genome. Journal of Bacteriology. 176: 3062-8. PMID 8188607 DOI: 10.1128/jb.176.10.3062-3068.1994 |
0.355 |
|
| 1994 |
Ojala PM, Paatero AO, Bamford DH. NTP binding induces conformational changes in the double-stranded RNA bacteriophage ø6 subviral particles. Virology. 205: 170-8. PMID 7975213 DOI: 10.1006/viro.1994.1632 |
0.326 |
|
| 1994 |
Bamford DH, Wickner RB. Assembly of double-stranded RNA viruses: bacteriophage ø6 and yeast virus L-A Seminars in Virology. 5: 61-69. DOI: 10.1006/Smvy.1994.1007 |
0.428 |
|
| 1993 |
Bamford JK, Bamford DH, Li T, Thomas GJ. Structural studies of the enveloped dsRNA bacteriophage phi 6 of Pseudomonas syringae by Raman spectroscopy. II. Nucleocapsid structure and thermostability of the virion, nucleocapsid and polymerase complex. Journal of Molecular Biology. 230: 473-82. PMID 8464061 DOI: 10.1006/jmbi.1993.1164 |
0.328 |
|
| 1993 |
Savilahti H, Bamford DH. Protein-primed DNA replication: role of inverted terminal repeats in the Escherichia coli bacteriophage PRD1 life cycle. Journal of Virology. 67: 4696-703. PMID 8331725 DOI: 10.1128/Jvi.67.8.4696-4703.1993 |
0.428 |
|
| 1993 |
Ojala PM, Juuti JT, Bamford DH. Protein P4 of double-stranded RNA bacteriophage phi 6 is accessible on the nucleocapsid surface: epitope mapping and orientation of the protein. Journal of Virology. 67: 2879-86. PMID 7682630 DOI: 10.1128/jvi.67.5.2879-2886.1993 |
0.326 |
|
| 1992 |
Onodera S, Olkkonen VM, Gottlieb P, Strassman J, Qiao XY, Bamford DH, Mindich L. Construction of a transducing virus from double-stranded RNA bacteriophage phi6: establishment of carrier states in host cells. Journal of Virology. 66: 190-6. PMID 1727482 DOI: 10.1128/jvi.66.1.190-196.1992 |
0.351 |
|
| 1992 |
Frilander M, Gottlieb P, Strassman J, Bamford DH, Mindich L. Dependence of minus-strand synthesis on complete genomic packaging in the double-stranded RNA bacteriophage phi 6. Journal of Virology. 66: 5013-7. PMID 1629962 DOI: 10.1128/Jvi.66.8.5013-5017.1992 |
0.65 |
|
| 1991 |
Olkkonen VM, Gottlieb P, Strassman J, Qiao XY, Bamford DH, Mindich L. In vitro assembly of infectious nucleocapsids of bacteriophage phi 6: formation of a recombinant double-stranded RNA virus. Proceedings of the National Academy of Sciences of the United States of America. 87: 9173-7. PMID 2251260 DOI: 10.1073/pnas.87.23.9173 |
0.446 |
|
| 1991 |
Caldentey J, Bamford JK, Bamford DH. Structure and assembly of bacteriophage PRD1, and Escherichia coli virus with a membrane. Journal of Structural Biology. 104: 44-51. PMID 2088450 DOI: 10.1016/1047-8477(90)90056-I |
0.314 |
|
| 1991 |
Olkkonen VM, Ojala PM, Bamford DH. Generation of infectious nucleocapsids by in vitro assembly of the shell protein on to the polymerase complex of the dsRNA bacteriophage phi 6. Journal of Molecular Biology. 218: 569-81. PMID 2016747 DOI: 10.1016/0022-2836(91)90702-8 |
0.336 |
|
| 1991 |
Bamford JK, Hänninen AL, Pakula TM, Ojala PM, Kalkkinen N, Frilander M, Bamford DH. Genome organization of membrane-containing bacteriophage PRD1. Virology. 183: 658-76. PMID 1853567 DOI: 10.1016/0042-6822(91)90995-N |
0.579 |
|
| 1990 |
Pakula TM, Savilahti H, Bamford DH. The organization of the right-end early region of bacteriophage PRD1 genome. Gene. 85: 53-8. PMID 2695404 DOI: 10.1016/0378-1119(89)90463-0 |
0.321 |
|
| 1990 |
Bamford DH, Bamford JK, Towse SA, Thomas GJ. Structural study of the lipid-containing bacteriophage PRD1 and its capsid and DNA components by laser Raman spectroscopy. Biochemistry. 29: 5982-7. PMID 2383568 DOI: 10.1021/bi00477a015 |
0.315 |
|
| 1988 |
Gottlieb P, Metzger S, Romantschuk M, Carton J, Strassman J, Bamford DH, Kalkkinen N, Mindich L. Nucleotide sequence of the middle dsRNA segment of bacteriophage phi 6: placement of the genes of membrane-associated proteins. Virology. 163: 183-90. PMID 3347997 DOI: 10.1016/0042-6822(88)90245-0 |
0.37 |
|
| 1988 |
Mindich L, Nemhauser I, Gottlieb P, Romantschuk M, Carton J, Frucht S, Strassman J, Bamford DH, Kalkkinen N. Nucleotide sequence of the large double-stranded RNA segment of bacteriophage phi 6: genes specifying the viral replicase and transcriptase. Journal of Virology. 62: 1180-5. PMID 3346944 DOI: 10.1128/jvi.62.4.1180-1185.1988 |
0.417 |
|
| 1987 |
Olkkonen VM, Bamford DH. The nucleocapsid of the lipid-containing double-stranded RNA bacteriophage phi 6 contains a protein skeleton consisting of a single polypeptide species. Journal of Virology. 61: 2362-7. PMID 3599179 DOI: 10.1128/jvi.61.8.2362-2367.1987 |
0.337 |
|
| 1987 |
Savilahti H, Bamford DH. Linear DNA replication: inverted terminal repeats of five closely related Escherichia coli bacteriophages. Gene. 49: 199-205. PMID 3569914 DOI: 10.1016/0378-1119(86)90280-5 |
0.309 |
|
| 1985 |
Mindich L, MacKenzie G, Strassman J, McGraw T, Metzger S, Romantschuk M, Bamford D. cDNA cloning of portions of the bacteriophage phi 6 genome. Journal of Bacteriology. 162: 992-9. PMID 3858275 DOI: 10.1128/Jb.162.3.992-999.1985 |
0.499 |
|
| 1983 |
Bamford D, Mindich L. Structure of the lipid-containing bacteriophage PRD1: disruption of wild-type and nonsense mutant phage particles with guanidine hydrochloride. Journal of Virology. 44: 1031-8. PMID 6816951 DOI: 10.1128/Jvi.44.3.1031-1038.1982 |
0.372 |
|
| 1983 |
Bamford D, McGraw T, MacKenzie G, Mindich L. Identification of a protein bound to the termini of bacteriophage PRD1 DNA. Journal of Virology. 47: 311-6. PMID 6620455 DOI: 10.1128/Jvi.47.2.311-316.1983 |
0.405 |
|
| 1982 |
Mindich L, Bamford D, McGraw T, Mackenzie G. Assembly of bacteriophage PRD1: particle formation with wild-type and mutant viruses. Journal of Virology. 44: 1021-30. PMID 6816950 DOI: 10.1128/Jvi.44.3.1021-1030.1982 |
0.373 |
|
| 1982 |
Mindich L, Bamford D, Goldthwaite C, Laverty M, Mackenzie G. Isolation of nonsense mutants of lipid-containing bacteriophage PRD1. Journal of Virology. 44: 1013-20. PMID 6757459 DOI: 10.1128/Jvi.44.3.1013-1020.1982 |
0.381 |
|
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