| Year |
Citation |
Score |
| Low-probability matches (unlikely to be authored by this person) |
| 2022 |
Yuan G, Tan S, Wang D, Yang Y, Tian B. Chromosome-Level Genome Assembly of the Rare and Endangered Tropical Plant (Euphorbiaceae). Frontiers in Genetics. 12: 755564. PMID 35140736 DOI: 10.3389/fgene.2021.755564 |
0.01 |
|
| 2021 |
Cha HJ, Uyan Ö, Kai Y, Liu T, Zhu Q, Tothova Z, Botten GA, Xu J, Yuan GC, Dekker J, Orkin SH. Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture. Nature Communications. 12: 6241. PMID 34716321 DOI: 10.1038/s41467-021-26574-4 |
0.01 |
|
| 2021 |
Dries R, Chen J, Del Rossi N, Khan MM, Sistig A, Yuan GC. Advances in spatial transcriptomic data analysis. Genome Research. 31: 1706-1718. PMID 34599004 DOI: 10.1101/gr.275224.121 |
0.01 |
|
| 2021 |
Takei Y, Zheng S, Yun J, Shah S, Pierson N, White J, Schindler S, Tischbirek CH, Yuan GC, Cai L. Single-cell nuclear architecture across cell types in the mouse brain. Science (New York, N.Y.). eabj1966. PMID 34591592 DOI: 10.1126/science.abj1966 |
0.01 |
|
| 2021 |
Kai Y, Li BE, Zhu M, Li GY, Chen F, Han Y, Cha HJ, Orkin SH, Cai W, Huang J, Yuan GC. Mapping the evolving landscape of super-enhancers during cell differentiation. Genome Biology. 22: 269. PMID 34526084 DOI: 10.1186/s13059-021-02485-x |
0.01 |
|
| 2021 |
Lê Cao KA, Abadi AJ, Davis-Marcisak EF, Hsu L, Arora A, Coullomb A, Deshpande A, Feng Y, Jeganathan P, Loth M, Meng C, Mu W, Pancaldi V, Sankaran K, Singh A, ... ... Yuan GC, et al. Community-wide hackathons to identify central themes in single-cell multi-omics. Genome Biology. 22: 220. PMID 34353350 DOI: 10.1186/s13059-021-02433-9 |
0.01 |
|
| 2021 |
VanDusen NJ, Lee JY, Gu W, Butler CE, Sethi I, Zheng Y, King JS, Zhou P, Suo S, Guo Y, Ma Q, Yuan GC, Pu WW. Massively parallel in vivo CRISPR screening identifies RNF20/40 as epigenetic regulators of cardiomyocyte maturation. Nature Communications. 12: 4442. PMID 34290256 DOI: 10.1038/s41467-021-24743-z |
0.01 |
|
| 2021 |
Fullard JF, Lee HC, Voloudakis G, Suo S, Javidfar B, Shao Z, Peter C, Zhang W, Jiang S, Corvelo A, Wargnier H, Woodoff-Leith E, Purohit DP, Ahuja S, Tsankova NM, ... ... Yuan GC, et al. Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19. Genome Medicine. 13: 118. PMID 34281603 DOI: 10.1186/s13073-021-00933-8 |
0.01 |
|
| 2021 |
Yu F, Sankaran VG, Yuan GC. CUT&RUNTools 2.0: A pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis. Bioinformatics (Oxford, England). PMID 34244724 DOI: 10.1093/bioinformatics/btab507 |
0.01 |
|
| 2021 |
Dong R, Yuan GC. SpatialDWLS: accurate deconvolution of spatial transcriptomic data. Genome Biology. 22: 145. PMID 33971932 DOI: 10.1186/s13059-021-02362-7 |
0.01 |
|
| 2021 |
Heckler M, Ali LR, Clancy-Thompson E, Qiang L, Ventre KS, Lenehan P, Roehle K, Luoma A, Boelaars K, Peters V, McCreary J, Boschert T, Wang ES, Suo S, Marangoni F, ... ... Yuan GC, et al. Inhibition of CDK4/6 promotes CD8 T-cell memory formation. Cancer Discovery. PMID 33941591 DOI: 10.1158/2159-8290.CD-20-1540 |
0.01 |
|
| 2021 |
Liu N, Xu S, Yao Q, Zhu Q, Kai Y, Hsu JY, Sakon P, Pinello L, Yuan GC, Bauer DE, Orkin SH. Author Correction: Transcription factor competition at the γ-globin promoters controls hemoglobin switching. Nature Genetics. PMID 33731942 DOI: 10.1038/s41588-021-00834-x |
0.01 |
|
| 2021 |
Dries R, Zhu Q, Dong R, Eng CL, Li H, Liu K, Fu Y, Zhao T, Sarkar A, Bao F, George RE, Pierson N, Cai L, Yuan GC. Giotto: a toolbox for integrative analysis and visualization of spatial expression data. Genome Biology. 22: 78. PMID 33685491 DOI: 10.1186/s13059-021-02286-2 |
0.01 |
|
| 2021 |
Wang J, Sun H, Jiang M, Li J, Zhang P, Chen H, Mei Y, Fei L, Lai S, Han X, Song X, Xu S, Chen M, Ouyang H, Zhang D, ... Yuan GC, et al. Tracing cell-type evolution by cross-species comparison of cell atlases. Cell Reports. 34: 108803. PMID 33657376 DOI: 10.1016/j.celrep.2021.108803 |
0.01 |
|
| 2021 |
Liu N, Xu S, Yao Q, Zhu Q, Kai Y, Hsu JY, Sakon P, Pinello L, Yuan GC, Bauer DE, Orkin SH. Transcription factor competition at the γ-globin promoters controls hemoglobin switching. Nature Genetics. PMID 33649594 DOI: 10.1038/s41588-021-00798-y |
0.01 |
|
| 2021 |
Cartwright ANR, Suo S, Badrinath S, Kumar S, Melms JC, Luoma A, Bagati A, Saadatpour A, Izar B, Yuan GC, Wucherpfennig KW. Immunosuppressive Myeloid Cells Induce Nitric Oxide-dependent DNA Damage and p53 Pathway Activation in CD8+ T cells. Cancer Immunology Research. PMID 33514509 DOI: 10.1158/2326-6066.CIR-20-0085 |
0.01 |
|
| 2021 |
Takei Y, Yun J, Zheng S, Ollikainen N, Pierson N, White J, Shah S, Thomassie J, Suo S, Eng CL, Guttman M, Yuan GC, Cai L. Integrated spatial genomics reveals global architecture of single nuclei. Nature. PMID 33505024 DOI: 10.1038/s41586-020-03126-2 |
0.01 |
|
| 2021 |
Guo Y, Cao Y, Jardin BD, Sethi I, Ma Q, Moghadaszadeh B, Troiano EC, Mazumdar N, Trembley MA, Small EM, Yuan GC, Beggs AH, Pu WT. Sarcomeres regulate murine cardiomyocyte maturation through MRTF-SRF signaling. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33361330 DOI: 10.1073/pnas.2008861118 |
0.01 |
|
| 2020 |
Cai W, Huang J, Zhu Q, Li BE, Seruggia D, Zhou P, Nguyen M, Fujiwara Y, Xie H, Yang Z, Hong D, Ren P, Xu J, Pu WT, Yuan GC, et al. Enhancer dependence of cell-type-specific gene expression increases with developmental age. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817427 DOI: 10.1073/Pnas.2008672117 |
0.01 |
|
| 2020 |
Luoma AM, Suo S, Williams HL, Sharova T, Sullivan K, Manos M, Bowling P, Hodi FS, Rahma O, Sullivan RJ, Boland GM, Nowak JA, Dougan SK, Dougan M, Yuan GC, et al. Molecular Pathways of Colon Inflammation Induced by Cancer Immunotherapy. Cell. PMID 32603654 DOI: 10.1016/J.Cell.2020.06.001 |
0.01 |
|
| 2020 |
Dong R, Yuan GC. GiniClust3: a fast and memory-efficient tool for rare cell type identification. Bmc Bioinformatics. 21: 158. PMID 32334526 DOI: 10.1186/S12859-020-3482-1 |
0.01 |
|
| 2020 |
McCarthy N, Manieri E, Storm EE, Saadatpour A, Luoma AM, Kapoor VN, Madha S, Gaynor LT, Cox C, Keerthivasan S, Wucherpfennig K, Yuan GC, de Sauvage FJ, Turley SJ, Shivdasani RA. Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient. Cell Stem Cell. PMID 32084389 DOI: 10.1016/J.Stem.2020.01.008 |
0.01 |
|
| 2020 |
Chen J, Liang X, Zhang S, Wang S, Garcia SP, Yan P, Yu H, Li Z, Liu L, Zhang F, Wei W, Le H, Zhang Y, Yuan GC, Chen S, et al. Two faces of bivalent domain regulate VEGFA responsiveness and angiogenesis. Cell Death & Disease. 11: 75. PMID 32001672 DOI: 10.1038/S41419-020-2228-3 |
0.01 |
|
| 2019 |
Zhang H, Christensen CL, Dries R, Oser MG, Deng J, Diskin B, Li F, Pan Y, Zhang X, Yin Y, Papadopoulos E, Pyon V, Thakurdin C, Kwiatkowski N, Jani K, ... ... Yuan GC, et al. CDK7 Inhibition Potentiates Genome Instability Triggering Anti-tumor Immunity in Small Cell Lung Cancer. Cancer Cell. PMID 31883968 DOI: 10.1016/J.Ccell.2019.11.003 |
0.01 |
|
| 2019 |
de Andrade LF, Lu Y, Luoma A, Ito Y, Pan D, Pyrdol JW, Yoon CH, Yuan GC, Wucherpfennig KW. Discovery of specialized NK cell populations infiltrating human melanoma metastases. Jci Insight. 4. PMID 31801909 DOI: 10.1172/Jci.Insight.133103 |
0.01 |
|
| 2019 |
Akerberg BN, Gu F, VanDusen NJ, Zhang X, Dong R, Li K, Zhang B, Zhou B, Sethi I, Ma Q, Wasson L, Wen T, Liu J, Dong K, Conlon FL, ... ... Yuan GC, et al. A reference map of murine cardiac transcription factor chromatin occupancy identifies dynamic and conserved enhancers. Nature Communications. 10: 4907. PMID 31659164 DOI: 10.1038/S41467-019-12812-3 |
0.01 |
|
| 2019 |
Zhu Q, Liu N, Orkin SH, Yuan GC. CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis. Genome Biology. 20: 192. PMID 31500663 DOI: 10.1186/S13059-019-1802-4 |
0.01 |
|
| 2019 |
Hu X, Xiang D, Xie Y, Tao L, Zhang Y, Jin Y, Pinello L, Wan Y, Yuan GC, Li Z. LSD1 suppresses invasion, migration and metastasis of luminal breast cancer cells via activation of GATA3 and repression of TRIM37 expression. Oncogene. PMID 31409898 DOI: 10.1038/S41388-019-0923-2 |
0.01 |
|
| 2019 |
Debruyne DN, Dries R, Sengupta S, Seruggia D, Gao Y, Sharma B, Huang H, Moreau L, McLane M, Day DS, Marco E, Chen T, Gray NS, Wong KK, Orkin SH, ... Yuan GC, et al. BORIS promotes chromatin regulatory interactions in treatment-resistant cancer cells. Nature. PMID 31391581 DOI: 10.1038/S41586-019-1472-0 |
0.01 |
|
| 2019 |
Tracy S, Yuan GC, Dries R. RESCUE: imputing dropout events in single-cell RNA-sequencing data. Bmc Bioinformatics. 20: 388. PMID 31299886 DOI: 10.1186/S12859-019-2977-0 |
0.01 |
|
| 2019 |
Sethi I, Cai Z, Roberts TM, Yuan GC. Molecular profiling establishes genetic features predictive of the efficacy of the p110β inhibitor KIN-193. Cancer Research. PMID 31292159 DOI: 10.1158/0008-5472.Can-19-0588 |
0.01 |
|
| 2019 |
Tsoucas D, Dong R, Chen H, Zhu Q, Guo G, Yuan GC. Accurate estimation of cell-type composition from gene expression data. Nature Communications. 10: 2975. PMID 31278265 DOI: 10.1038/S41467-019-10802-Z |
0.01 |
|
| 2019 |
Joyce CE, Saadatpour A, Ruiz-Gutierrez M, Bolukbasi OV, Jiang L, Thomas DD, Young S, Hofmann I, Sieff C, Myers KC, Whangbo J, Libermann TA, Nusbaum C, Yuan GC, Shimamura A, et al. TGFβ signaling underlies hematopoietic dysfunction and bone marrow failure in Shwachman-Diamond Syndrome. The Journal of Clinical Investigation. 130. PMID 31211692 DOI: 10.1172/Jci125375 |
0.01 |
|
| 2019 |
Chen H, Albergante L, Hsu JY, Lareau CA, Lo Bosco G, Guan J, Zhou S, Gorban AN, Bauer DE, Aryee MJ, Langenau DM, Zinovyev A, Buenrostro JD, Yuan GC, Pinello L. Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM. Nature Communications. 10: 1903. PMID 31015418 DOI: 10.1038/S41467-019-09670-4 |
0.01 |
|
| 2019 |
Krajewska M, Dries R, Grassetti AV, Dust S, Gao Y, Huang H, Sharma B, Day DS, Kwiatkowski N, Pomaville M, Dodd O, Chipumuro E, Zhang T, Greenleaf AL, Yuan GC, et al. CDK12 loss in cancer cells affects DNA damage response genes through premature cleavage and polyadenylation. Nature Communications. 10: 1757. PMID 30988284 DOI: 10.1038/S41467-019-09703-Y |
0.01 |
|
| 2019 |
Eng CL, Lawson M, Zhu Q, Dries R, Koulena N, Takei Y, Yun J, Cronin C, Karp C, Yuan GC, Cai L. Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH. Nature. PMID 30911168 DOI: 10.1038/S41586-019-1049-Y |
0.01 |
|
| 2019 |
Grootjans J, Krupka N, Hosomi S, Matute JD, Hanley T, Saveljeva S, Gensollen T, Heijmans J, Li H, Limenitakis JP, Ganal-Vonarburg SC, Suo S, Luoma AM, Shimodaira Y, Duan J, ... ... Yuan GC, et al. Epithelial endoplasmic reticulum stress orchestrates a protective IgA response. Science (New York, N.Y.). 363: 993-998. PMID 30819965 DOI: 10.1126/Science.Aat7186 |
0.01 |
|
| 2019 |
Wang S, Chen J, Garcia SP, Liang X, Zhang F, Yan P, Yu H, Wei W, Li Z, Wang J, Le H, Han Z, Luo X, Day DS, Stevens SM, ... ... Yuan GC, et al. A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA. Genome Research. PMID 30670628 DOI: 10.1101/Gr.239053.118 |
0.01 |
|
| 2019 |
Cartwright ANR, Jiang P, Saadatpour A, Yuan G, Liu SX, Wucherpfennig KW. Abstract A176: Overcoming CD8 T-cell suppression in the tumor microenvironment Cancer Immunology Research. 7. DOI: 10.1158/2326-6074.Cricimteatiaacr18-A176 |
0.01 |
|
| 2019 |
Pan D, Kobayashi A, Jiang P, Yuan G, Liu XS, Doench J, Qiu X, Rao P, Long H, Brown MA, Wucherpfennig KW, Andrade LFd, Tay RE, Luoma AM, Tsoucas D, et al. Abstract A146: Systematic discovery of immune regulatory mechanisms in tumor cells Cancer Immunology Research. 7. DOI: 10.1158/2326-6074.Cricimteatiaacr18-A146 |
0.01 |
|
| 2018 |
Barros-Silva JD, Linn DE, Steiner I, Guo G, Ali A, Pakula H, Ashton G, Peset I, Brown M, Clarke NW, Bronson RT, Yuan GC, Orkin SH, Li Z, Baena E. Single-Cell Analysis Identifies LY6D as a Marker Linking Castration-Resistant Prostate Luminal Cells to Prostate Progenitors and Cancer. Cell Reports. 25: 3504-3518.e6. PMID 30566873 DOI: 10.1016/J.Celrep.2018.11.069 |
0.01 |
|
| 2018 |
Suo S, Zhu Q, Saadatpour A, Fei L, Guo G, Yuan GC. Revealing the Critical Regulators of Cell Identity in the Mouse Cell Atlas. Cell Reports. 25: 1436-1445.e3. PMID 30404000 DOI: 10.1016/J.Celrep.2018.10.045 |
0.01 |
|
| 2018 |
Zhu Q, Shah S, Dries R, Cai L, Yuan GC. Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data. Nature Biotechnology. PMID 30371680 DOI: 10.1038/Nbt.4260 |
0.01 |
|
| 2018 |
Guo Y, Jardin BD, Zhou P, Sethi I, Akerberg BN, Toepfer CN, Ai Y, Li Y, Ma Q, Guatimosim S, Hu Y, Varuzhanyan G, VanDusen NJ, Zhang D, Chan DC, ... Yuan GC, et al. Hierarchical and stage-specific regulation of murine cardiomyocyte maturation by serum response factor. Nature Communications. 9: 3837. PMID 30242271 DOI: 10.1038/S41467-018-06347-2 |
0.01 |
|
| 2018 |
Glass K, Thibault D, Guo F, Mitchel JA, Pham B, Qiu W, Li Y, Jiang Z, Castaldi PJ, Silverman EK, Raby B, Park JA, Yuan GC, Zhou X. Integrative epigenomic analysis in differentiated human primary bronchial epithelial cells exposed to cigarette smoke. Scientific Reports. 8: 12750. PMID 30143676 DOI: 10.1038/S41598-018-30781-3 |
0.01 |
|
| 2018 |
Sun H, Wang J, Gong Z, Yao J, Wang Y, Xu J, Yuan GC, Zhang Y, Shao Z. Quantitative integration of epigenomic variation and transcription factor binding using MAmotif toolkit identifies an important role of IRF2 as transcription activator at gene promoters. Cell Discovery. 4: 38. PMID 30002873 DOI: 10.1038/s41421-018-0045-y |
0.01 |
|
| 2018 |
Beyaz S, Mana MD, Roper J, Kedrin D, Saadatpour A, Hong SJ, Bauer-Rowe KE, Xifaras ME, Akkad A, Arias E, Pinello L, Katz Y, Shinagare S, Abu-Remaileh M, Mihaylova MM, ... ... Yuan GC, et al. Author Correction: High-fat diet enhances stemness and tumorigenicity of intestinal progenitors. Nature. PMID 29849139 DOI: 10.1038/S41586-018-0187-Y |
0.01 |
|
| 2018 |
Han X, Wang R, Zhou Y, Fei L, Sun H, Lai S, Saadatpour A, Zhou Z, Chen H, Ye F, Huang D, Xu Y, Huang W, Jiang M, Jiang X, ... ... Yuan GC, et al. Mapping the Mouse Cell Atlas by Microwell-Seq. Cell. 173: 1307. PMID 29775597 DOI: 10.1016/j.cell.2018.05.012 |
0.01 |
|
| 2018 |
Tsoucas D, Yuan GC. GiniClust2: a cluster-aware, weighted ensemble clustering method for cell-type detection. Genome Biology. 19: 58. PMID 29747686 DOI: 10.1186/S13059-018-1431-3 |
0.01 |
|
| 2018 |
Canver MC, Haeussler M, Bauer DE, Orkin SH, Sanjana NE, Shalem O, Yuan GC, Zhang F, Concordet JP, Pinello L. Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments. Nature Protocols. 13: 946-986. PMID 29651054 DOI: 10.1038/Nprot.2018.005 |
0.01 |
|
| 2018 |
Han X, Chen H, Huang D, Chen H, Fei L, Cheng C, Huang H, Yuan GC, Guo G. Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. Genome Biology. 19: 47. PMID 29622030 DOI: 10.1186/s13059-018-1426-0 |
0.01 |
|
| 2018 |
Liu N, Hargreaves VV, Zhu Q, Kurland JV, Hong J, Kim W, Sher F, Macias-Trevino C, Rogers JM, Kurita R, Nakamura Y, Yuan GC, Bauer DE, Xu J, Bulyk ML, et al. Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch. Cell. PMID 29606353 DOI: 10.1016/J.Cell.2018.03.016 |
0.01 |
|
| 2018 |
Ferrari de Andrade L, Tay RE, Pan D, Luoma AM, Ito Y, Badrinath S, Tsoucas D, Franz B, May KF, Harvey CJ, Kobold S, Pyrdol JW, Yoon C, Yuan GC, Hodi FS, et al. Antibody-mediated inhibition of MICA and MICB shedding promotes NK cell-driven tumor immunity. Science (New York, N.Y.). 359: 1537-1542. PMID 29599246 DOI: 10.1126/Science.Aao0505 |
0.01 |
|
| 2018 |
Huang J, Li K, Cai W, Liu X, Zhang Y, Orkin SH, Xu J, Yuan GC. Dissecting super-enhancer hierarchy based on chromatin interactions. Nature Communications. 9: 943. PMID 29507293 DOI: 10.1038/S41467-018-03279-9 |
0.01 |
|
| 2018 |
Jiang L, Tsoucas D, Yuan GC. Assessing Inequality in Transcriptomic Data. Cell Systems. 6: 149-150. PMID 29494801 DOI: 10.1016/J.Cels.2018.02.007 |
0.01 |
|
| 2018 |
Han X, Wang R, Zhou Y, Fei L, Sun H, Lai S, Saadatpour A, Zhou Z, Chen H, Ye F, Huang D, Xu Y, Huang W, Jiang M, Jiang X, ... ... Yuan GC, et al. Mapping the Mouse Cell Atlas by Microwell-Seq. Cell. 172: 1091-1107.e17. PMID 29474909 DOI: 10.1016/J.Cell.2018.02.001 |
0.01 |
|
| 2018 |
Pinello L, Farouni R, Yuan GC. Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements. Bioinformatics (Oxford, England). PMID 29360936 DOI: 10.1093/Bioinformatics/Bty031 |
0.01 |
|
| 2018 |
Pan D, Kobayashi A, Jiang P, Ferrari de Andrade L, Tay RE, Luoma A, Tsoucas D, Qiu X, Lim K, Rao P, Long HW, Yuan GC, Doench J, Brown M, Liu S, et al. A major chromatin regulator determines resistance of tumor cells to T cell-mediated killing. Science (New York, N.Y.). PMID 29301958 DOI: 10.1126/Science.Aao1710 |
0.01 |
|
| 2017 |
Huang D, Guo G, Yuan P, Ralston A, Sun L, Huss M, Mistri T, Pinello L, Ng HH, Yuan G, Ji J, Rossant J, Robson P, Han X. The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during the first developmental cell lineage segregation. Scientific Reports. 7: 17156. PMID 29214996 DOI: 10.1038/S41598-017-16009-W |
0.01 |
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| 2017 |
Jadhav U, Saxena M, O'Neill NK, Saadatpour A, Yuan GC, Herbert Z, Murata K, Shivdasani RA. Dynamic Reorganization of Chromatin Accessibility Signatures during Dedifferentiation of Secretory Precursors into Lgr5+ Intestinal Stem Cells. Cell Stem Cell. PMID 28648363 DOI: 10.1016/J.Stem.2017.05.001 |
0.01 |
|
| 2017 |
Han X, Yu H, Huang D, Xu Y, Saadatpour A, Li X, Wang L, Yu J, Pinello L, Lai S, Jiang M, Tian X, Zhang F, Cen Y, Fujiwara Y, ... ... Yuan GC, et al. A molecular roadmap for induced multi-lineage trans-differentiation of fibroblasts by chemical combinations. Cell Research. 27: 843. PMID 28572571 DOI: 10.1038/cr.2017.78 |
0.01 |
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| 2017 |
Han X, Yu H, Huang D, Xu Y, Saadatpour A, Li X, Wang L, Yu J, Pinello L, Lai S, Jiang M, Tian X, Zhang F, Cen Y, Fujiwara Y, ... ... Yuan GC, et al. A molecular roadmap for induced multi-lineage trans-differentiation of fibroblasts by chemical combinations. Cell Research. 27: 842. PMID 28572570 DOI: 10.1038/cr.2017.77 |
0.01 |
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| 2017 |
Yuan GC, Cai L, Elowitz M, Enver T, Fan G, Guo G, Irizarry R, Kharchenko P, Kim J, Orkin S, Quackenbush J, Saadatpour A, Schroeder T, Shivdasani R, Tirosh I. Challenges and emerging directions in single-cell analysis. Genome Biology. 18: 84. PMID 28482897 DOI: 10.1186/S13059-017-1218-Y |
0.01 |
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| 2017 |
Min L, Zhang C, Qu L, Huang J, Jiang L, Liu J, Pinello L, Yuan GC, Shou C. Gene regulatory pattern analysis reveals essential role of core transcriptional factors' activation in triple-negative breast cancer. Oncotarget. 8: 21938-21953. PMID 28423538 DOI: 10.18632/Oncotarget.15749 |
0.01 |
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| 2017 |
Adeegbe D, Liu Y, Lizotte PH, Kamihara Y, Aref AR, Almonte C, Dries R, Li Y, Liu S, Wang X, Warner-Hatten T, Castrillon J, Yuan GC, Poudel-Neupane N, Zhang H, et al. Synergistic Immunostimulatory Effects and Therapeutic Benefit of Combined Histone Deacetylase and Bromodomain Inhibition in Non-small Cell Lung Cancer. Cancer Discovery. PMID 28408401 DOI: 10.1158/2159-8290.Cd-16-1020 |
0.01 |
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| 2017 |
Marco E, Meuleman W, Huang J, Glass K, Pinello L, Wang J, Kellis M, Yuan GC. Multi-scale chromatin state annotation using a hierarchical hidden Markov model. Nature Communications. 8: 15011. PMID 28387224 DOI: 10.1038/Ncomms15011 |
0.01 |
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| 2017 |
Guo Y, VanDusen NJ, Zhang L, Gu W, Sethi I, Guatimosim S, Ma Q, Jardin BD, Ai Y, Zhang D, Chen B, Guo A, Yuan GC, Song LS, Pu WT. Analysis of Cardiac Myocyte Maturation Using CASAAV, A Platform for Rapid Dissection of Cardiac Myocyte Gene Function In Vivo. Circulation Research. PMID 28356340 DOI: 10.1161/Circresaha.116.310283 |
0.01 |
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| 2017 |
Canver MC, Lessard S, Pinello L, Wu Y, Ilboudo Y, Stern EN, Needleman AJ, Galactéros F, Brugnara C, Kutlar A, McKenzie C, Reid M, Chen DD, Das PP, A Cole M, ... ... Yuan GC, et al. Variant-aware saturating mutagenesis using multiple Cas9 nucleases identifies regulatory elements at trait-associated loci. Nature Genetics. PMID 28218758 DOI: 10.1038/Ng.3793 |
0.01 |
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| 2017 |
Tu S, Yuan GC, Shao Z. The PRC2-binding long non-coding RNAs in human and mouse genomes are associated with predictive sequence features. Scientific Reports. 7: 41669. PMID 28139710 DOI: 10.1038/Srep41669 |
0.01 |
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| 2017 |
Han X, Yu H, Huang D, Xu Y, Saadatpour A, Li X, Wang L, Yu J, Pinello L, Lai S, Jiang M, Tian X, Zhang F, Cen Y, Fujiwara Y, ... Yuan GC, et al. A molecular roadmap for induced multi-lineage trans-differentiation of fibroblasts by chemical combinations. Cell Research. PMID 28128194 DOI: 10.1038/Cr.2017.17 |
0.01 |
|
| 2017 |
Tsoucas D, Yuan GC. Recent progress in single-cell cancer genomics. Current Opinion in Genetics & Development. 42: 22-32. PMID 28126650 DOI: 10.1016/J.Gde.2017.01.002 |
0.01 |
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| 2017 |
Cui HK, Li FB, Guo YC, Zhao YL, Yan RF, Wang W, Li YD, Wang YL, Yuan GY. Intermediate analysis of magnesium alloy covered stent for a lateral aneurysm model in the rabbit common carotid artery. European Radiology. PMID 28124747 DOI: 10.1007/s00330-016-4715-6 |
0.01 |
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| 2017 |
Liu Q, Wang Y, Tong D, Liu G, Yuan W, Zhang J, Ye J, Zhang Y, Yuan G, Feng Q, Zhang D, Jiang J. A Somatic HIF2α Mutation-Induced Multiple and Recurrent Pheochromocytoma/Paraganglioma with Polycythemia: Clinical Study with Literature Review. Endocrine Pathology. PMID 28116635 DOI: 10.1007/S12022-017-9469-4 |
0.01 |
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| 2017 |
Peng Y, Liu J, Qi C, Yuan G, Li J, Jiang H. nBu4NI-catalyzed oxidative cross-coupling of carbon dioxide, amines, and aryl ketones: access to O-β-oxoalkyl carbamates. Chemical Communications (Cambridge, England). PMID 28111646 DOI: 10.1039/c6cc09762f |
0.01 |
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| 2017 |
Jiang L, Yuan GL, Liang QL, Zhang HJ, Huang J, Cheng SA, Peng XX. Positive expression of Y-box binding protein 1 and prognosis in non-small cell lung cancer: a meta-analysis. Oncotarget. PMID 28108740 DOI: 10.18632/oncotarget.14732 |
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Xiong Z, Wei T, Zhang Y, Zhang X, Yang C, Liu Z, Yuan G, Li J, Wang J. Selective-area growth of periodic nanopyramid light-emitting diode arrays on GaN/sapphire templates patterned by multiple-exposure colloidal lithography. Nanotechnology. PMID 28103586 DOI: 10.1088/1361-6528/aa5abe |
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Liu Q, Tong D, Yuan W, Liu G, Yuan G, Lan W, Zhang D, Zhang J, Huang Z, Zhang Y, Jiang J. Different RET gene mutation-induced multiple endocrine neoplasia type 2A in 3 Chinese families. Medicine. 96: e5967. PMID 28099363 DOI: 10.1097/Md.0000000000005967 |
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Liu SH, Wei D, Yuan GR, Jiang HB, Dou W, Wang JJ. Antimicrobial peptide gene cecropin-2 and defensin respond to peptidoglycan infection in the female adult of oriental fruit fly, Bactrocera dorsalis (Hendel). Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. PMID 28089733 DOI: 10.1016/j.cbpb.2017.01.004 |
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| 2017 |
Yi X, Zhao D, Zhang Q, Xu J, Yuan G, Zhuo R, Li F. Preparation of multi-location reduction-sensitive core crosslinked folate-PEG-coated micelles for rapid release of doxorubicin and tariquidar to overcome drug resistance. Nanotechnology. PMID 28055982 DOI: 10.1088/1361-6528/Aa5715 |
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Blinka S, Reimer MH, Pulakanti K, Pinello L, Yuan GC, Rao S. Identification of Transcribed Enhancers by Genome-Wide Chromatin Immunoprecipitation Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1468: 91-109. PMID 27662872 DOI: 10.1007/978-1-4939-4035-6_8 |
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Dorantes-Acosta E, Huang H, Garcia SP, Stieglitz E, Loh M, Yuan G, Cantor AB. Abstract 26: RUNX1 as a transcriptional target of activated Shp2 (PTPN11) in juvenile myelomonocytic leukemia Clinical Cancer Research. 23: 26-26. DOI: 10.1158/1557-3265.Hemmal17-26 |
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| 2017 |
Hu X, Xiang D, Tao L, Xie Y, Jin Y, Guo Y, Pinello L, Yuan G, Li Z. Abstract 2563: LSD1 maintains differentiation and survival of mammary luminal cells and suppresses invasion of luminal breast cancer cells via GATA3 Cancer Research. 77: 2563-2563. DOI: 10.1158/1538-7445.Am2017-2563 |
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| 2017 |
Cantor A, Dorantes-Costa E, Huang H, Garcia S, Stieglitz E, Loh M, Yuan G. Dysregulation of the transcription factor runx1 in juvenile myelomonocytic leukemia Experimental Hematology. 53. DOI: 10.1016/J.Exphem.2017.06.077 |
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| 2016 |
Zhang X, Zhou T, Yu W, Ai J, Wang X, Gao L, Yuan G, Li M. Development and evaluation of a PCR-based assay kit for authentication of Zaocys dhumnades in traditional Chinese medicine. Mitochondrial Dna. Part a, Dna Mapping, Sequencing, and Analysis. 1-5. PMID 28035866 DOI: 10.1080/24701394.2016.1248429 |
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| 2016 |
Wang Z, Li L, Du R, Yan J, Liu N, Yuan W, Jiang Y, Xu S, Ye F, Yuan G, Zhang B, Liu P. CML/RAGE signal induces calcification cascade in diabetes. Diabetology & Metabolic Syndrome. 8: 83. PMID 28035243 DOI: 10.1186/s13098-016-0196-7 |
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| 2016 |
Zhao T, Jin Y, Mao G, Wei Y, Wu G, Ye X, Zhou Y, Yuan G, Gao L, Hong Y, Chen Y, Hong C, Zhou H, Su D, Qin Z, et al. CYFRA 21-1 is an early predictor of chemotherapeutic effectiveness in advanced nonsmall cell lung cancer: An observational study. Medicine. 95: e5748. PMID 28033287 DOI: 10.1097/MD.0000000000005748 |
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| 2016 |
Beyaz S, Kim JH, Pinello L, Xifaras ME, Hu Y, Huang J, Kerenyi MA, Das PP, Barnitz RA, Herault A, Dogum R, Haining WN, Yilmaz ÖH, Passegue E, Yuan GC, et al. The histone demethylase UTX regulates the lineage-specific epigenetic program of invariant natural killer T cells. Nature Immunology. PMID 27992400 DOI: 10.1038/Ni.3644 |
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| 2016 |
Liu Y, Li Z, Yuan G, Xia Q, Yuan C, Cui Y. Chiral Cu(salen)-Based Metal-Organic Framework for Heterogeneously Catalyzed Aziridination and Amination of Olefins. Inorganic Chemistry. 55: 12500-12503. PMID 27989174 DOI: 10.1021/acs.inorgchem.6b02151 |
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| 2016 |
Peng F, Li H, Wang D, Tian P, Tian Y, Yuan G, Xu D, Liu X. Enhanced Corrosion Resistance and Biocompatibility of Magnesium Alloy by Mg-Al-Layered Double Hydroxide. Acs Applied Materials & Interfaces. PMID 27983794 DOI: 10.1021/Acsami.6B12974 |
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| 2016 |
Yang SS, Chan HY, Hsieh SY, Yuan GF, Wong SL, Lin CH, Cheng MJ, Chen IS, Chang HS. Secondary metabolites from the fungus Porodaedalea pini. Planta Medica. 81: S1-S381. PMID 27975937 DOI: 10.1055/s-0036-1596738 |
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| 2016 |
Wang H, Yuan G, Zhao B, Zhao Y, Qiu Y. High expression of B23 is associated with tumorigenesis and poor prognosis in bladder urothelial carcinoma. Molecular Medicine Reports. PMID 27959455 DOI: 10.3892/mmr.2016.6033 |
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| 2016 |
Du T, Sun X, Yuan G, Zhou X, Lu H, Lin X, Yu X. Sex differences in the impact of nonalcoholic fatty liver disease on cardiovascular risk factors. Nutrition, Metabolism, and Cardiovascular Diseases : Nmcd. PMID 27956025 DOI: 10.1016/j.numecd.2016.10.004 |
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| 2016 |
Yuan GY, Zhang L, Wang MJ, Zhang KL. Synthesis and characterization of a cadmium(II)-organic supramolecular coordination compound based on the multifunctional 2-amino-5-sulfobenzoic acid ligand. Acta Crystallographica. Section C, Structural Chemistry. 72: 939-946. PMID 27918294 DOI: 10.1107/S2053229616016326 |
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| 2016 |
Yuan G, Wang F, Stephenson NA, Wang L, Rotstein BH, Vasdev N, Tang P, Liang SH. Metal-free (18)F-labeling of aryl-CF2H via nucleophilic radiofluorination and oxidative C-H activation. Chemical Communications (Cambridge, England). PMID 27917423 DOI: 10.1039/C6Cc07913J |
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| 2016 |
Yuan G, Hua B, Yang Y, Xu L, Cai T, Sun N, Yan Z, Lu C, Qian R. The Circadian Gene Clock Regulates Bone Formation via PDIA3. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. PMID 27883226 DOI: 10.1002/jbmr.3046 |
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| 2016 |
Yuan G, Li M, Yu M, Tian C, Wang G, Fu H. In situ synthesis, enhanced luminescence and application in dye sensitized solar cells of Y2O3/Y2O2S:Eu(3+) nanocomposites by reduction of Y2O3:Eu(3). Scientific Reports. 6: 37133. PMID 27872492 DOI: 10.1038/srep37133 |
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| 2016 |
Wang W, Wang YL, Chen M, Chen L, Zhang J, Li YD, Li MH, Yuan GY. Magnesium alloy covered stent for treatment of a lateral aneurysm model in rabbit common carotid artery: An in vivo study. Scientific Reports. 6: 37401. PMID 27869217 DOI: 10.1038/Srep37401 |
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| 2016 |
Yuan G, Luo J, Han CC, Liu Y. Gelation transitions of colloidal systems with bridging attractions. Physical Review. E. 94: 040601. PMID 27841525 DOI: 10.1103/Physreve.94.040601 |
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| 2016 |
Li W, Li N, Zheng Y, Yuan G. Fretting properties of biodegradable Mg-Nd-Zn-Zr alloy in air and in Hank's solution. Scientific Reports. 6: 35803. PMID 27812007 DOI: 10.1038/Srep35803 |
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| 2016 |
Wu W, Li J, Lan T, Müller K, Niazi NK, Chen X, Xu S, Zheng L, Chu Y, Li J, Yuan G, Wang H. Unraveling sorption of lead in aqueous solutions by chemically modified biochar derived from coconut fiber: A microscopic and spectroscopic investigation. The Science of the Total Environment. 576: 766-774. PMID 27810761 DOI: 10.1016/j.scitotenv.2016.10.163 |
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| 2016 |
Yuan G, Sheng Z, Liu W. The Modified HZ Conjugate Gradient Algorithm for Large-Scale Nonsmooth Optimization. Plos One. 11: e0164289. PMID 27780245 DOI: 10.1371/journal.pone.0164289 |
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| 2016 |
Liu S, Wang S, Yuan G, Ouyang X, Liu Y, Zhu B, Zhang B. Effect of Oak Chips on Evolution of Phenolic Compounds and Color Attributes of Bog Bilberry Syrup Wine During Bottle-Aging. Journal of Food Science. PMID 27755647 DOI: 10.1111/1750-3841.13532 |
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| 2016 |
Yan S, Xue H, Zhang P, Han X, Guo X, Yuan G, Deng L, Li G. MMP inhibitor Ilomastat induced amoeboid-like motility via activation of the Rho signaling pathway in glioblastoma cells. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 27743382 DOI: 10.1007/s13277-016-5464-5 |
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| 2016 |
Wang Y, Chen L, Yuan G, Luo H, Li J, Viehland D. Large field-induced-strain at high temperature in ternary ferroelectric crystals. Scientific Reports. 6: 35120. PMID 27734908 DOI: 10.1038/Srep35120 |
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| 2016 |
Yuan G, Yu Y, Ji L, Jie X, Yue L, Kang Y, Jianping G, Zuojin L. Down-Regulated Receptor Interacting Protein 140 Is Involved in Lipopolysaccharide-Preconditioning-Induced Inactivation of Kupffer Cells and Attenuation of Hepatic Ischemia Reperfusion Injury. Plos One. 11: e0164217. PMID 27723769 DOI: 10.1371/journal.pone.0164217 |
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| 2016 |
Niu J, Xu G, Jiang S, Li H, Yuan G. In Vitro Antioxidant activities and anti-diabetic effect of a polysaccharide from Schisandra sphenanthera in rats with type 2 diabetes. International Journal of Biological Macromolecules. 94: 154-160. PMID 27720962 DOI: 10.1016/j.ijbiomac.2016.10.015 |
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| 2016 |
Luo J, Yuan G, Han CC. Tuning the bridging attraction between large hard particles by the softness of small microgels. Soft Matter. 12: 7863-7872. PMID 27714350 DOI: 10.1039/c6sm01519k |
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| 2016 |
Wang L, Ma H, Chang L, Ma C, Yuan G, Wang J, Wu T. Ferroelectric BiFeO3 as an Oxide Dye in Highly Tunable Mesoporous All-Oxide Photovoltaic Heterojunctions. Small (Weinheim An Der Bergstrasse, Germany). PMID 27706914 DOI: 10.1002/Smll.201602355 |
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| 2016 |
Yuan G, Ren J, Ouyang X, Wang L, Wang M, Shen X, Zhang B, Zhu B. Effect of Raw Material, Pressing and Glycosidase on the Volatile Compound Composition of Wine Made From Goji Berries. Molecules (Basel, Switzerland). 21. PMID 27706098 DOI: 10.3390/Molecules21101324 |
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| 2016 |
Lizotte PH, Ivanova EV, Awad MM, Jones RE, Keogh L, Liu H, Dries R, Almonte C, Herter-Sprie GS, Santos A, Feeney NB, Paweletz CP, Kulkarni MM, Bass AJ, Rustgi AK, ... Yuan GC, et al. Multiparametric profiling of non-small-cell lung cancers reveals distinct immunophenotypes. Jci Insight. 1: e89014. PMID 27699239 DOI: 10.1172/Jci.Insight.89014 |
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| 2016 |
Zhang X, Chen Y, Ye Y, Wang J, Wang H, Yuan G, Lin Z, Wu Y, Zhang Y, Lin X. Wnt signaling promotes hindgut fate commitment through regulating multi-lineage genes during hESC differentiation. Cellular Signalling. PMID 27693749 DOI: 10.1016/j.cellsig.2016.09.009 |
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| 2016 |
Wei Y, Zhou X, Liu S, Wang H, Liu L, Liu R, Kang J, Hong K, Wang D, Yuan G. Novel and Practical Scoring Systems for the Diagnosis of Thyroid Nodules. Plos One. 11: e0163039. PMID 27654865 DOI: 10.1371/journal.pone.0163039 |
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| 2016 |
Li J, Yuan GL, Wu MZ, Sun Y, Han P, Wang GH. Evidence for persistent organic pollutants released from melting glacier in the central Tibetan Plateau, China. Environmental Pollution (Barking, Essex : 1987). PMID 27640759 DOI: 10.1016/j.envpol.2016.09.037 |
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| 2016 |
Zhu Z, Hua B, Shang Z, Yuan G, Xu L, Li E, Li X, Sun N, Yan Z, Qian R, Lu C. Altered Clock and Lipid Metabolism-Related Genes in Atherosclerotic Mice Kept with Abnormal Lighting Condition. Biomed Research International. 2016: 5438589. PMID 27631008 DOI: 10.1155/2016/5438589 |
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| 2016 |
Chang HS, Lin CH, Chen YS, Wang HC, Chan HY, Hsieh SY, Wu HC, Cheng MJ, Yuan GF, Lin SY, Lin YJ, Chen IS. Secondary Metabolites of the Endophytic Fungus Lachnum abnorme from Ardisia cornudentata. International Journal of Molecular Sciences. 17. PMID 27618025 DOI: 10.3390/ijms17091512 |
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| 2016 |
Niu J, Tang Z, Huang H, Pei J, Zhang H, Yuan G, Ding W. Research on a Zn-Cu alloy as a biodegradable material for potential vascular stents application. Materials Science & Engineering. C, Materials For Biological Applications. 69: 407-13. PMID 27612729 DOI: 10.1016/j.msec.2016.06.082 |
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| 2016 |
Zhang J, Yuan G, Dong M, Zhang T, Hua G, Zhou Q, Shi W. Notch signaling modulates proliferative vitreoretinopathy via regulating retinal pigment epithelial-to-mesenchymal transition. Histochemistry and Cell Biology. PMID 27600720 DOI: 10.1007/s00418-016-1484-x |
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| 2016 |
Cao Q, Yuan G, Yin L, Chen D, He P, Wang H. Morphological characteristics of polyvinyl chloride (PVC) dechlorination during pyrolysis process: Influence of PVC content and heating rate. Waste Management (New York, N.Y.). PMID 27596943 DOI: 10.1016/j.wasman.2016.08.031 |
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| 2016 |
Shi L, Mao C, Wang X, Liu R, Li L, Mou X, Xu P, Li H, Xu C, Yuan G, Wang B, Zhang H. Association of chemerin levels and bone mineral density in Chinese obese postmenopausal women. Medicine. 95: e4583. PMID 27583869 DOI: 10.1097/MD.0000000000004583 |
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| 2016 |
Liu Y, Liu A, Liu L, Tian S, Liu J, Pu R, Fang X, Liu X, Yuan G. Feasibility of spectral imaging with low-concentration contrast medium in abdominal CT angiography of obese patients. International Journal of Clinical Practice. 70: B37-43. PMID 27577512 DOI: 10.1111/ijcp.12856 |
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| 2016 |
Wu W, Li J, Niazi NK, Müller K, Chu Y, Zhang L, Yuan G, Lu K, Song Z, Wang H. Influence of pyrolysis temperature on lead immobilization by chemically modified coconut fiber-derived biochars in aqueous environments. Environmental Science and Pollution Research International. PMID 27572693 DOI: 10.1007/s11356-016-7428-0 |
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| 2016 |
Wan T, Yuan G, Ren Y, Zuo Z, Wang Z, Jia Y, Cui H, Peng X, Fang J, Deng J, Yu S, Hu Y, Shen L, Ma X, Wang Y, et al. Diet-induced obese mice exhibit altered immune responses to acute lung injury induced by Escherichia coli. Obesity (Silver Spring, Md.). PMID 27558300 DOI: 10.1002/oby.21608 |
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| 2016 |
Liu Y, Hu Q, Shen P, Tang L, Yuan G, Zhou Y, Chai H. Clinical and pathological analysis of IgA nephropathy with chronic renal failure. Renal Failure. 1-6. PMID 27558026 DOI: 10.1080/0886022X.2016.1214051 |
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| 2016 |
Yu C, Jiang S, Cao X, Yuan G, Wu T, Bai L, Lu R. Interference effects on harmonic generation from H2 + in nonhomogeneous laser field. Optics Express. 24: 19736-19745. PMID 27557250 |
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| 2016 |
Liu Z, Huang Y, Yi X, Fu B, Yuan G, Wang J, Li J, Zhang Y. Analysis of Photoluminescence Thermal Quenching: Guidance for the Design of Highly Effective p-type Doping of Nitrides. Scientific Reports. 6: 32033. PMID 27550805 DOI: 10.1038/Srep32033 |
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| 2016 |
Yuan G, Jones GB, Vasdev N, Liang SH. Radiosynthesis and preliminary PET evaluation of (18)F-labeled 2-(1-(3-fluorophenyl)-2-oxo-5-(pyrimidin-2-yl)-1,2-dihydropyridin-3-yl)benzonitrile for imaging AMPA receptors. Bioorganic & Medicinal Chemistry Letters. PMID 27546294 DOI: 10.1016/J.Bmcl.2016.07.078 |
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| 2016 |
Lin S, Long H, Zhou J, Yuan G. Study of G-quadruplexes in the STAT3 gene using electrospray ionization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 30: 173-8. PMID 27539434 DOI: 10.1002/rcm.7640 |
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| 2016 |
Yuan G, Peng YJ, Khan SA, Nanduri J, Singh A, Vasavda C, Semenza GL, Kumar GK, Snyder SH, Prabhakar NR. H2S production by reactive oxygen species in the carotid body triggers hypertension in a rodent model of sleep apnea. Science Signaling. 9: ra80. PMID 27531649 DOI: 10.1126/Scisignal.Aaf3204 |
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| 2016 |
An L, Han X, Li H, Ma Y, Shi L, Xu G, Yuan G, Sun J, Zhao N, Sheng Y, Wang M, Du P. Effects and mechanism of cerebroprotein hydrolysate on learning and memory ability in mice. Genetics and Molecular Research : Gmr. 15. PMID 27525868 DOI: 10.4238/gmr.15038804 |
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| 2016 |
Kim TH, Saadatpour A, Guo G, Saxena M, Cavazza A, Desai N, Jadhav U, Jiang L, Rivera MN, Orkin SH, Yuan GC, Shivdasani RA. Single-Cell Transcript Profiles Reveal Multilineage Priming in Early Progenitors Derived from Lgr5(+) Intestinal Stem Cells. Cell Reports. PMID 27524622 DOI: 10.1016/J.Celrep.2016.07.056 |
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| 2016 |
Du T, Sun X, Yuan G, Zhou X, Lu H, Lin X, Yu X. Lipid phenotypes in patients with nonalcoholic fatty liver disease. Metabolism: Clinical and Experimental. 65: 1391-8. PMID 27506745 DOI: 10.1016/j.metabol.2016.06.006 |
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| 2016 |
Ba J, Han P, Yuan G, Mo Z, Pan C, Wu F, Xu L, Hanson ME, Engel SS, Shankar RR. A Randomized, Trial to Assess Safety and Efficacy of Sitagliptin in Chinese Patients with Type 2 Diabetes Mellitus Inadequately Controlled on Sulfonylurea Alone or Combined with Metformin. Journal of Diabetes. PMID 27502307 DOI: 10.1111/1753-0407.12456 |
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| 2016 |
Li H, Hai J, Zhou J, Yuan G. The formation and characteristics of the i-motif structure within the promoter of the c-myb proto-oncogene. Journal of Photochemistry and Photobiology. B, Biology. 162: 625-632. PMID 27487467 DOI: 10.1016/j.jphotobiol.2016.07.035 |
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| 2016 |
Xu H, Ye Y, Zhang X, Hao Y, Shi F, Yuan G, Wu Y, Fei Z, He X. Military experience helps setting reasonable personality characteristics but does not alter the criminal behavior-related impression of negative parental experience and alcoholism in a Chinese population. Psychiatry Research. 244: 130-138. PMID 27479103 DOI: 10.1016/j.psychres.2016.06.043 |
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| 2016 |
Yuan GZ, Hsia CF, Lin ZW, Chiang C, Chiang YW, Huang MH. Highly Facet-Dependent Photocatalytic Properties of Cu2 O Crystals Established through the Formation of Au-Decorated Cu2 O Heterostructures. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 27470656 DOI: 10.1002/Chem.201602173 |
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| 2016 |
Wang X, Gao F, Yuan G, Shi K, Huang Y, Chen Y, Qiu R, Sun L, Liu J, Hu C, Zhou Y. Ten-year follow-up analysis of chronic hepatitis C patients after getting sustained virological response to pegylated interferon-α and ribavirin therapy. Journal of Viral Hepatitis. PMID 27453300 DOI: 10.1111/jvh.12574 |
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| 2016 |
Li RQ, Yuan GH, Chen M, Shao YM, Zhu SN, Zhang JQ, Guo XH. Evaluation of Diagnostic Efficiency of Ultrasound Features on Malignant Thyroid Nodules in Chinese Patients. Chinese Medical Journal. 129: 1784-1788. PMID 27453225 DOI: 10.4103/0366-6999.186643 |
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| 2016 |
Liu L, Luo Y, Zhang G, Jin C, Zhou Z, Cheng Z, Yuan G. The mRNA expression of DRD2, PI3KCB, and AKT1 in the blood of acute schizophrenia patients. Psychiatry Research. 243: 397-402. PMID 27449010 DOI: 10.1016/j.psychres.2016.07.010 |
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| 2016 |
Xu C, Wu F, Mao C, Wang X, Zheng T, Bu L, Mou X, Zhou Y, Yuan G, Wang S, Xiao Y. Excess iodine promotes apoptosis of thyroid follicular epithelial cells by inducing autophagy suppression and is associated with Hashimoto thyroiditis disease. Journal of Autoimmunity. PMID 27448770 DOI: 10.1016/j.jaut.2016.07.008 |
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| 2016 |
Huo WY, Li Z, Chen YH, Xie X, Lan K, Liu J, Ren G, Li Y, Liu Y, Jiang X, Yang D, Li S, Guo L, Zhang H, Hou L, ... ... Yuan G, et al. First Investigation on the Radiation Field of the Spherical Hohlraum. Physical Review Letters. 117: 025002. PMID 27447512 DOI: 10.1103/PhysRevLett.117.025002 |
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| 2016 |
Zhao P, Liu P, Yuan G, Jia J, Li X, Qi D, Chen S, Ma T, Liu G, Cheng L. New Insights on Drought Stress Response by Global Investigation of Gene Expression Changes in Sheepgrass (Leymus chinensis). Frontiers in Plant Science. 7: 954. PMID 27446180 DOI: 10.3389/fpls.2016.00954 |
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| 2016 |
Yang F, Zhou L, Wang D, Yang LL, Yuan GR, Huang QY. Suppression of TRPV4 channels ameliorates anti-dipsogenic effects under hypoxia in the subfornical organ of rats. Scientific Reports. 6: 30168. PMID 27436489 DOI: 10.1038/srep30168 |
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| 2016 |
Wan C, Yuan G, Luo D, Zhang L, Lin H, Liu H, Chen L, Yang G, Chen S, Chen Z. The Dentin Sialoprotein (DSP) Domain Regulates Dental Mesenchymal Cell Differentiation through a Novel Surface Receptor. Scientific Reports. 6: 29666. PMID 27430624 DOI: 10.1038/srep29666 |
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| 2016 |
Pinello L, Canver MC, Hoban MD, Orkin SH, Kohn DB, Bauer DE, Yuan GC. Analyzing CRISPR genome-editing experiments with CRISPResso. Nature Biotechnology. 34: 695-697. PMID 27404874 DOI: 10.1038/nbt.3583 |
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| 2016 |
Zong Y, Yuan G, Han CC. Asymmetrical phase separation and gelation in binary mixtures of oppositely charged colloids. The Journal of Chemical Physics. 145: 014904. PMID 27394122 DOI: 10.1063/1.4954993 |
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Zhang YP, Yang JW, Liu Y, Fan TS, Luo XB, Yuan GL, Zhang PF, Xie XF, Song XY, Chen W, Ji XQ, Li X, Du TF, Ge LJ, Fu BZ, et al. Development of the radial neutron camera system for the HL-2A tokamak. The Review of Scientific Instruments. 87: 063503. PMID 27370450 DOI: 10.1063/1.4953109 |
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| 2016 |
Jiang L, Chen H, Pinello L, Yuan GC. GiniClust: detecting rare cell types from single-cell gene expression data with Gini index. Genome Biology. 17: 144. PMID 27368803 DOI: 10.1186/S13059-016-1010-4 |
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| 2016 |
Gao Y, Chen N, Dong XG, Yuan GQ, Yu B, Xie LX. Surgical management of fungal endophthalmitis resulting from fungal keratitis. International Journal of Ophthalmology. 9: 848-53. PMID 27366686 DOI: 10.18240/ijo.2016.06.10 |
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| 2016 |
Yuan GM, Song W, Yang M, Li DC, Zhao JL, Cao ZL. Monogamy relation of multi-qubit systems for squared Tsallis-q entanglement. Scientific Reports. 6: 28719. PMID 27346605 DOI: 10.1038/srep28719 |
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| 2016 |
Zhang J, Sun L, Geng XY, Zhang BB, Yuan GL, Zhang ST. Temperature dependent structures and properties of Bi0.5Na0.5TiO3-based lead free piezoelectric composite. Dalton Transactions (Cambridge, England : 2003). PMID 27334673 DOI: 10.1039/C6Dt01880G |
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| 2016 |
Lai J, Chang L, Yuan G. I2/TBHP Mediated C-N and C-H Bond Cleavage of Tertiary Amines toward Selective Synthesis of Sulfonamides and β-Arylsulfonyl Enamines: The Solvent Effect on Reaction. Organic Letters. PMID 27326829 DOI: 10.1021/acs.orglett.6b01412 |
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| 2016 |
Yang NH, Yuan GS, Zhou YC, Liu JW, Huang HP, Hu CG, Xiong L, Li Y, Zhou FY, Yang SL, Zhou YP. [Entecavir combined with Fufang Biejia Ruangan tablet in treatment of chronic hepatitis B patients with liver fibrosis: 96-week efficacy analyses]. Nan Fang Yi Ke Da Xue Xue Bao = Journal of Southern Medical University. 36: 775-779. PMID 27320877 |
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| 2016 |
Feng B, Zhang ZJ, Zhu RM, Yuan GZ, Luo LY, McAlonan GM, Xu FZ, Chen J, Liu LY, Lv YY, Wong HK, Zhang Y, Zhu LX. Transcutaneous electrical acupoint stimulation as an adjunct therapy for obsessive-compulsive disorder: A randomized controlled study. Journal of Psychiatric Research. 80: 30-37. PMID 27281260 DOI: 10.1016/j.jpsychires.2016.05.015 |
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| 2016 |
Ni J, Ramkissoon SH, Xie S, Goel S, Stover DG, Guo H, Luu V, Marco E, Ramkissoon LA, Kang YJ, Hayashi M, Nguyen QD, Ligon AH, Du R, Claus EB, ... ... Yuan GC, et al. Combination inhibition of PI3K and mTORC1 yields durable remissions in mice bearing orthotopic patient-derived xenografts of HER2-positive breast cancer brain metastases. Nature Medicine. PMID 27270588 DOI: 10.1038/Nm.4120 |
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| 2016 |
Lu K, Yang X, Gielen G, Bolan N, Ok YS, Niazi NK, Xu S, Yuan G, Chen X, Zhang X, Liu D, Song Z, Liu X, Wang H. Effect of bamboo and rice straw biochars on the mobility and redistribution of heavy metals (Cd, Cu, Pb and Zn) in contaminated soil. Journal of Environmental Management. PMID 27264699 DOI: 10.1016/j.jenvman.2016.05.068 |
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| 2016 |
Cao J, Sun X, Lu C, Zhou Z, Zhang X, Yuan G. Water-soluble cellulose acetate from waste cotton fabrics and the aqueous processing of all-cellulose composites. Carbohydrate Polymers. 149: 60-7. PMID 27261730 DOI: 10.1016/j.carbpol.2016.04.086 |
0.01 |
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| 2016 |
Yuan G, Singh G, Chen S, Perez KC, Wu Y, Liu B, Helms JA. Cleft Palate and Aglossia Result From Perturbations in Wnt and Hedgehog Signaling. The Cleft Palate-Craniofacial Journal : Official Publication of the American Cleft Palate-Craniofacial Association. PMID 27259005 DOI: 10.1597/15-178 |
0.01 |
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| 2016 |
Zhu W, Wang W, Yuan G. An Improved Interacting Multiple Model Filtering Algorithm Based on the Cubature Kalman Filter for Maneuvering Target Tracking. Sensors (Basel, Switzerland). 16. PMID 27258285 DOI: 10.3390/s16060805 |
0.01 |
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| 2016 |
Ai J, Wang X, Gao L, Xia W, Li M, Yuan G, Niu J, Zhang L. PCR-fingerprint profiles of mitochondrial and genomic DNA extracted from Fetus cervi using different extraction methods. Mitochondrial Dna. Part a. Dna Mapping, Sequencing, and Analysis. 1-6. PMID 27247076 DOI: 10.1080/24701394.2016.1186666 |
0.01 |
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| 2016 |
Xu H, Xia Y, Xu B, Yin J, Yuan G, Liu Z. Encoding, training and retrieval in ferroelectric tunnel junctions. Scientific Reports. 6: 27022. PMID 27244092 DOI: 10.1038/srep27022 |
0.01 |
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| 2016 |
Yuan G, Qian W, Pan R, Jia J, Jiang D, Yang Q, Wang S, Liu Y, Yu S, Hu H, Sun W, Ye J, Mao C, Zhuang R, Zhou L. Reduced circulating oxytocin and High-Molecular-Weight adiponectin are risk factors for metabolic syndrome. Endocrine Journal. PMID 27237400 DOI: 10.1507/endocrj.EJ16-0078 |
0.01 |
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| 2016 |
Yuan G, Yan BP, Hu J, Wang S, Sun JP. Compressive giant right atrial diverticulum. European Heart Journal Cardiovascular Imaging. PMID 27225814 DOI: 10.1093/ehjci/jew113 |
0.01 |
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| 2016 |
Zhang J, Hiromoto S, Yamazaki T, Niu J, Huang H, Jia1 G, Li H, Ding W, Yuan G. Effect of macrophages on in vitro corrosion behavior of magnesium alloy. Journal of Biomedical Materials Research. Part A. PMID 27223576 DOI: 10.1002/jbm.a.35788 |
0.01 |
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| 2016 |
Jadhav U, Nalapareddy K, Saxena M, O'Neill NK, Pinello L, Yuan GC, Orkin SH, Shivdasani RA. Acquired Tissue-Specific Promoter Bivalency Is a Basis for PRC2 Necessity in Adult Cells. Cell. PMID 27212235 DOI: 10.1016/J.Cell.2016.04.031 |
0.01 |
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| 2016 |
Giecold G, Marco E, Garcia SP, Trippa L, Yuan GC. Robust lineage reconstruction from high-dimensional single-cell data. Nucleic Acids Research. PMID 27207878 DOI: 10.1093/Nar/Gkw452 |
0.01 |
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| 2016 |
Xie X, Gao H, Wu S, Zhao Y, Du C, Yuan G, Ning Q, McCormick K, Luo X. Increased Cord Blood Betatrophin Levels in the Offspring of Mothers with Gestational Diabetes. Plos One. 11: e0155646. PMID 27196053 DOI: 10.1371/journal.pone.0155646 |
0.01 |
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| 2016 |
Zhu Z, Hua B, Xu L, Yuan G, Li E, Li X, Sun N, Yan Z, Lu C, Qian R. CLOCK promotes 3T3-L1 cell proliferation via Wnt signaling. Iubmb Life. PMID 27194636 DOI: 10.1002/iub.1512 |
0.01 |
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| 2016 |
Luo L, Wang Q, Chen M, Yuan G, Wang Z, Zhou C. IGF-1 and IGFBP-1 in peripheral blood and decidua of early miscarriages with euploid embryos: comparison between women with and without PCOS. Gynecological Endocrinology : the Official Journal of the International Society of Gynecological Endocrinology. 1-5. PMID 27174569 DOI: 10.3109/09513590.2016.1138459 |
0.01 |
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| 2016 |
Xue H, Yuan G, Guo X, Liu Q, Zhang J, Gao X, Guo X, Xu S, Li T, Shao Q, Yan S, Li G. A Novel Tumor-promoting Mechanism of IL6 and the Therapeutic Efficacy of Tocilizumab: Hypoxia-induced IL6 Is a Potent Autophagy Initiator in Glioblastoma via the p-STAT3-MIR155-3p-CREBRF Pathway. Autophagy. 0. PMID 27163161 DOI: 10.1080/15548627.2016.1178446 |
0.01 |
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| 2016 |
Tan W, Zhou J, Gu J, Xu M, Xu X, Yuan G. Probing the G‑quadruplex from hsa-miR-3620-5p and inhibition of its interaction with the target sequence. Talanta. 154: 560-6. PMID 27154715 DOI: 10.1016/j.talanta.2016.02.037 |
0.01 |
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| 2016 |
Stelloh C, Reimer MH, Pulakanti K, Blinka S, Peterson J, Pinello L, Jia S, Roumiantsev S, Hessner MJ, Milanovich S, Yuan GC, Rao S. The cohesin-associated protein Wapal is required for proper Polycomb-mediated gene silencing. Epigenetics & Chromatin. 9: 14. PMID 27087855 DOI: 10.1186/S13072-016-0063-7 |
0.01 |
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| 2016 |
Beyaz S, Mana MD, Roper J, Kedrin D, Saadatpour A, Hong SJ, Bauer-Rowe KE, Xifaras ME, Akkad A, Arias E, Pinello L, Katz Y, Shinagare S, Abu-Remaileh M, Mihaylova MM, ... ... Yuan GC, et al. High-fat diet enhances stemness and tumorigenicity of intestinal progenitors. Nature. 531: 53-8. PMID 26935695 DOI: 10.1038/Nature17173 |
0.01 |
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| 2016 |
Guo G, Pinello L, Han X, Lai S, Shen L, Lin TW, Zou K, Yuan GC, Orkin SH. Serum-Based Culture Conditions Provoke Gene Expression Variability in Mouse Embryonic Stem Cells as Revealed by Single-Cell Analysis. Cell Reports. PMID 26804902 DOI: 10.1016/J.Celrep.2015.12.089 |
0.01 |
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| 2016 |
Huang J, Liu X, Li D, Shao Z, Cao H, Zhang Y, Trompouki E, Bowman TV, Zon LI, Yuan GC, Orkin SH, Xu J. Dynamic Control of Enhancer Repertoires Drives Lineage and Stage-Specific Transcription during Hematopoiesis. Developmental Cell. 36: 9-23. PMID 26766440 DOI: 10.1016/J.Devcel.2015.12.014 |
0.01 |
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| 2016 |
Cloonan SM, Glass K, Laucho-Contreras ME, Bhashyam AR, Cervo M, Pabón MA, Konrad C, Polverino F, Siempos II, Perez E, Mizumura K, Ghosh MC, Parameswaran H, Williams NC, Rooney KT, ... ... Yuan GC, et al. Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice. Nature Medicine. PMID 26752519 DOI: 10.1038/Nm.4021 |
0.01 |
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| 2016 |
Joyce C, Saadatpour A, Jiang L, Ruiz-Gutierrez M, Bolukbasi OV, Hofmann I, Sieff CA, Nusbaum C, Shimamura A, Yuan G, Novina CD. Single Cell Transcriptional Profiling Reveals Activation of TNF-Alpha Signaling in Hematopoietic Stem and Progenitor Cells from Shwachman-Diamond Syndrome Patients Blood. 128: 335-335. DOI: 10.1182/Blood.V128.22.335.335 |
0.01 |
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| 2016 |
Dorantes Acosta E, Huang H, Garcia SP, Stieglitz E, Loh ML, Yuan GC, Cantor AB. RUNX1 Is a Candidate Transcriptional Effector in Juvenile Myelomonocytic Leukemia Blood. 128: 2699-2699. DOI: 10.1182/BLOOD.V128.22.2699.2699 |
0.01 |
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| 2016 |
Krajewska M, Moore NF, Chipumuro E, Zhang T, Marco E, Hatheway C, Sharma B, Kwiatkowski N, Yuan G, Young RA, Gray NS, George RE. Abstract PR04: Targeting super-enhancer driven oncogene transcription through cyclin-dependent kinase inhibitors Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-Pr04 |
0.01 |
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| 2016 |
Linn DE, Barros-Silva J, Guo G, Brown M, Ashton G, Clarke NW, Yuan G, Orkin SH, Baena E, Li Z. Abstract LB-275: Single cell analysis identified LY6D as a novel marker of castration-resistant multipotent luminal progenitors Cancer Research. 76. DOI: 10.1158/1538-7445.Am2016-Lb-275 |
0.01 |
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| 2016 |
Barros-Silva J, Linn D, Steiner I, Guo G, Yuan G, Orkin S, Li Z, Baena E. Proffered Paper: Exploring prostate progenitor compartment complexity as a route of targeting prostate cancer heterogeneity European Journal of Cancer. 61: S5. DOI: 10.1016/S0959-8049(16)61011-0 |
0.01 |
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| 2015 |
Wu JN, Pinello L, Yissachar E, Wischhusen JW, Yuan GC, Roberts CW. Functionally distinct patterns of nucleosome remodeling at enhancers in glucocorticoid-treated acute lymphoblastic leukemia. Epigenetics & Chromatin. 8: 53. PMID 26633995 DOI: 10.1186/S13072-015-0046-0 |
0.01 |
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| 2015 |
Saadatpour A, Lai S, Guo G, Yuan GC. Single-Cell Analysis in Cancer Genomics. Trends in Genetics : Tig. 31: 576-86. PMID 26450340 DOI: 10.1016/J.Tig.2015.07.003 |
0.01 |
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| 2015 |
Canver MC, Smith EC, Sher F, Pinello L, Sanjana NE, Shalem O, Chen DD, Schupp PG, Vinjamur DS, Garcia SP, Luc S, Kurita R, Nakamura Y, Fujiwara Y, Maeda T, ... Yuan GC, et al. BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis. Nature. PMID 26375006 DOI: 10.1038/Nature15521 |
0.01 |
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| 2015 |
Huang J, Marco E, Pinello L, Yuan GC. Predicting chromatin organization using histone marks. Genome Biology. 16: 162. PMID 26272203 DOI: 10.1186/S13059-015-0740-Z |
0.01 |
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| 2015 |
Hu T, Yeh JE, Pinello L, Jacob J, Chakravarthy S, Yuan GC, Chopra R, Frank DA. Impact of the N-terminal domain of STAT3 in STAT3-dependent transcriptional activity. Molecular and Cellular Biology. PMID 26169829 DOI: 10.1128/Mcb.00060-15 |
0.01 |
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| 2015 |
Glass K, Quackenbush J, Spentzos D, Haibe-Kains B, Yuan GC. A network model for angiogenesis in ovarian cancer. Bmc Bioinformatics. 16: 115. PMID 25888305 DOI: 10.1186/S12859-015-0551-Y |
0.01 |
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| 2015 |
Lao T, Glass K, Qiu W, Polverino F, Gupta K, Morrow J, Mancini JD, Vuong L, Perrella MA, Hersh CP, Owen CA, Quackenbush J, Yuan GC, Silverman EK, Zhou X. Haploinsufficiency of Hedgehog interacting protein causes increased emphysema induced by cigarette smoke through network rewiring. Genome Medicine. 7: 12. PMID 25763110 DOI: 10.1186/S13073-015-0137-3 |
0.01 |
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| 2015 |
Xu J, Shao Z, Li D, Xie H, Kim W, Huang J, Taylor JE, Pinello L, Glass K, Jaffe JD, Yuan GC, Orkin SH. Developmental control of polycomb subunit composition by GATA factors mediates a switch to non-canonical functions. Molecular Cell. 57: 304-16. PMID 25578878 DOI: 10.1016/J.Molcel.2014.12.009 |
0.01 |
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| 2015 |
Bauer DE, Canver MC, Smith EC, Sher F, Pinello L, Sanjana NE, Shalem O, Chen DD, Schupp PG, Vinjamur DS, Garcia SP, Luc S, Kurita R, Nakamura Y, Fujiwara Y, ... ... Yuan G, et al. Crispr-Cas9 Saturating Mutagenesis Reveals an Achilles Heel in the BCL11A Erythroid Enhancer for Fetal Hemoglobin Induction (by Genome Editing) Blood. 126: 638-638. DOI: 10.1182/Blood.V126.23.638.638 |
0.01 |
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| 2015 |
Chipumuro E, Marco E, Christensen CL, Kwiatkowski N, Zhang T, Hatheway CM, Abraham BJ, Sharma B, Yeung C, Altabef A, Perez-Atayde A, Wong K, Yuan G, Gray NS, Young RA, et al. Abstract PR05: Targeting of CDK7 inhibits super-enhancer-associated oncogenic programs in MYCN-amplified tumor cells Molecular Cancer Research. 13. DOI: 10.1158/1557-3125.Myc15-Pr05 |
0.01 |
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| 2014 |
Saadatpour A, Guo G, Orkin SH, Yuan GC. Characterizing heterogeneity in leukemic cells using single-cell gene expression analysis. Genome Biology. 15: 525. PMID 25517911 DOI: 10.1186/S13059-014-0525-9 |
0.01 |
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| 2014 |
Marco E, Karp RL, Guo G, Robson P, Hart AH, Trippa L, Yuan GC. Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape. Proceedings of the National Academy of Sciences of the United States of America. 111: E5643-50. PMID 25512504 DOI: 10.1073/Pnas.1408993111 |
0.01 |
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| 2014 |
Glass K, Quackenbush J, Silverman EK, Celli B, Rennard SI, Yuan GC, DeMeo DL. Sexually-dimorphic targeting of functionally-related genes in COPD. Bmc Systems Biology. 8: 118. PMID 25431000 DOI: 10.1186/S12918-014-0118-Y |
0.01 |
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| 2014 |
Chipumuro E, Marco E, Christensen CL, Kwiatkowski N, Zhang T, Hatheway CM, Abraham BJ, Sharma B, Yeung C, Altabef A, Perez-Atayde A, Wong KK, Yuan GC, Gray NS, Young RA, et al. CDK7 inhibition suppresses super-enhancer-linked oncogenic transcription in MYCN-driven cancer. Cell. 159: 1126-39. PMID 25416950 DOI: 10.1016/J.Cell.2014.10.024 |
0.01 |
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| 2014 |
Wu G, Cai J, Han Y, Chen J, Huang ZP, Chen C, Cai Y, Huang H, Yang Y, Liu Y, Xu Z, He D, Zhang X, Hu X, Pinello L, ... ... Yuan GC, et al. LincRNA-p21 regulates neointima formation, vascular smooth muscle cell proliferation, apoptosis, and atherosclerosis by enhancing p53 activity. Circulation. 130: 1452-65. PMID 25156994 DOI: 10.1161/Circulationaha.114.011675 |
0.01 |
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| 2014 |
Riddell J, Gazit R, Garrison BS, Guo G, Saadatpour A, Mandal PK, Ebina W, Volchkov P, Yuan GC, Orkin SH, Rossi DJ. Reprogramming committed murine blood cells to induced hematopoietic stem cells with defined factors. Cell. 157: 549-64. PMID 24766805 DOI: 10.1016/J.Cell.2014.04.006 |
0.01 |
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| 2014 |
Pinello L, Xu J, Orkin SH, Yuan GC. Analysis of chromatin-state plasticity identifies cell-type-specific regulators of H3K27me3 patterns. Proceedings of the National Academy of Sciences of the United States of America. 111: E344-53. PMID 24395799 DOI: 10.1073/Pnas.1322570111 |
0.01 |
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| 2014 |
Das PP, Shao Z, Beyaz S, Apostolou E, Pinello L, De Los Angeles A, O'Brien K, Atsma JM, Fujiwara Y, Nguyen M, Ljuboja D, Guo G, Woo A, Yuan GC, Onder T, et al. Distinct and combinatorial functions of Jmjd2b/Kdm4b and Jmjd2c/Kdm4c in mouse embryonic stem cell identity. Molecular Cell. 53: 32-48. PMID 24361252 DOI: 10.1016/J.Molcel.2013.11.011 |
0.01 |
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| 2014 |
Pinello L, Lo Bosco G, Yuan GC. Applications of alignment-free methods in epigenomics. Briefings in Bioinformatics. 15: 419-30. PMID 24197932 DOI: 10.1093/Bib/Bbt078 |
0.01 |
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| 2014 |
Xu J, Shao Z, Li D, Xie H, Kim W, Huang J, Pinello L, Glass K, Yuan G, Orkin SH. Developmental Control of Polycomb Subunit Composition Mediates a Switch to Non-Canonical Functions during Hematopoiesis Blood. 124: 241-241. DOI: 10.1182/Blood.V124.21.241.241 |
0.01 |
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| 2014 |
Chipumuro E, Marco E, Zhang T, Christensen C, Kwiatkowski N, Sharma B, Hatheway C, Altabef A, Abraham BJ, Wong K, Yuan G, Young RA, Gray NS, George RE. Abstract LB-125: Selective inhibition of CDK7 targets MYCN-driven transcriptional amplification in neuroblastoma Cancer Research. 74. DOI: 10.1158/1538-7445.Am2014-Lb-125 |
0.01 |
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| 2014 |
Riddell J, Gazit R, Garrison B, Guo G, Saadatpour A, Mandal P, Ebina W, Volchkov P, Yuan G, Orkin S, Rossi D. Reprogramming Committed Murine Blood Cells to Induced Hematopoietic Stem Cells with Defined Factors Cell. 158: 226. DOI: 10.1016/j.cell.2014.06.014 |
0.01 |
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| 2013 |
Nag A, Savova V, Fung HL, Miron A, Yuan GC, Zhang K, Gimelbrant AA. Chromatin signature of widespread monoallelic expression. Elife. 2: e01256. PMID 24381246 DOI: 10.7554/eLife.01256 |
0.01 |
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| 2013 |
Ku WL, Girvan M, Yuan GC, Sorrentino F, Ott E. Modeling the dynamics of bivalent histone modifications. Plos One. 8: e77944. PMID 24223747 DOI: 10.1371/Journal.Pone.0077944 |
0.01 |
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| 2013 |
Pulakanti K, Pinello L, Stelloh C, Blinka S, Allred J, Milanovich S, Kiblawi S, Peterson J, Wang A, Yuan GC, Rao S. Enhancer transcribed RNAs arise from hypomethylated, Tet-occupied genomic regions. Epigenetics : Official Journal of the Dna Methylation Society. 8: 1303-20. PMID 24135681 DOI: 10.4161/epi.26597 |
0.01 |
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| 2013 |
Bauer DE, Kamran SC, Lessard S, Xu J, Fujiwara Y, Lin C, Shao Z, Canver MC, Smith EC, Pinello L, Sabo PJ, Vierstra J, Voit RA, Yuan GC, Porteus MH, et al. An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level. Science (New York, N.Y.). 342: 253-7. PMID 24115442 DOI: 10.1126/Science.1242088 |
0.01 |
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| 2013 |
Guo G, Luc S, Marco E, Lin TW, Peng C, Kerenyi MA, Beyaz S, Kim W, Xu J, Das PP, Neff T, Zou K, Yuan GC, Orkin SH. Mapping cellular hierarchy by single-cell analysis of the cell surface repertoire. Cell Stem Cell. 13: 492-505. PMID 24035353 DOI: 10.1016/J.Stem.2013.07.017 |
0.01 |
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| 2013 |
Glass K, Huttenhower C, Quackenbush J, Yuan GC. Passing messages between biological networks to refine predicted interactions. Plos One. 8: e64832. PMID 23741402 DOI: 10.1371/Journal.Pone.0064832 |
0.01 |
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| 2013 |
Walker SR, Nelson EA, Yeh JE, Pinello L, Yuan GC, Frank DA. STAT5 outcompetes STAT3 to regulate the expression of the oncogenic transcriptional modulator BCL6. Molecular and Cellular Biology. 33: 2879-90. PMID 23716595 DOI: 10.1128/Mcb.01620-12 |
0.01 |
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| 2013 |
Larson JL, Huttenhower C, Quackenbush J, Yuan GC. A tiered hidden Markov model characterizes multi-scale chromatin states. Genomics. 102: 1-7. PMID 23570996 DOI: 10.1016/J.Ygeno.2013.03.009 |
0.01 |
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| 2013 |
Baena E, Shao Z, Linn DE, Glass K, Hamblen MJ, Fujiwara Y, Kim J, Nguyen M, Zhang X, Godinho FJ, Bronson RT, Mucci LA, Loda M, Yuan GC, Orkin SH, et al. ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients. Genes & Development. 27: 683-98. PMID 23512661 DOI: 10.1101/Gad.211011.112 |
0.01 |
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| 2013 |
Nag A, Savova V, Fung H, Miron A, Yuan G, Zhang K, Gimelbrant AA. Author response: Chromatin signature of widespread monoallelic expression Elife. DOI: 10.7554/Elife.01256.015 |
0.01 |
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| 2013 |
Bauer DE, Kamran SC, Lessard S, Xu J, Fujiwara Y, Lin C, Shao Z, Canver MC, Smith EC, Pinello L, Sabo PJ, Vierstra J, Voit RA, Yuan G, Porteus MH, et al. Fine-Mapping and Genome Editing Reveal An Essential Erythroid Enhancer At The HbF-Associated BCL11A Locus Blood. 122: 437-437. DOI: 10.1182/Blood.V122.21.437.437 |
0.01 |
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| 2013 |
Wu J, Pinello L, Yissachar E, Yuan G, Roberts C. Abstract PR10: Modulation of chromatin structure and transcription by the SWI/SNF complex in acute lymphoblastic leukemia Cancer Research. 73. DOI: 10.1158/1538-7445.Cec13-Pr10 |
0.01 |
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| 2013 |
Baena E, Shao Z, Linn D, Glass K, Hamblen M, Fujiwara Y, Kim J, Nguyen M, Zhang X, Godinho F, Bronson RT, Mucci L, Loda M, Yuan G, Li Z, et al. Abstract 5393: ETV1 directs androgen metabolism and confers aggressive prostate cancer in engineered mice and patients. Cancer Research. 73: 5393-5393. DOI: 10.1158/1538-7445.Am2013-5393 |
0.01 |
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| 2012 |
Xu J, Shao Z, Glass K, Bauer DE, Pinello L, Van Handel B, Hou S, Stamatoyannopoulos JA, Mikkola HK, Yuan GC, Orkin SH. Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis. Developmental Cell. 23: 796-811. PMID 23041383 DOI: 10.1016/J.Devcel.2012.09.003 |
0.01 |
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| 2012 |
Shao Z, Zhang Y, Yuan GC, Orkin SH, Waxman DJ. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets. Genome Biology. 13: R16. PMID 22424423 DOI: 10.1186/Gb-2012-13-3-R16 |
0.01 |
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| 2012 |
Larson JL, Yuan GC. Chromatin states accurately classify cell differentiation stages. Plos One. 7: e31414. PMID 22363642 DOI: 10.1371/Journal.Pone.0031414 |
0.01 |
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| 2012 |
Yuan GC. Linking genome to epigenome. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 4: 297-309. PMID 22344857 DOI: 10.1002/Wsbm.1165 |
0.01 |
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| 2012 |
Xu J, Shao Z, Glass K, Bauer DE, Pinello L, Van Handel B, Hou S, Stamatoyannopoulos JA, Mikkola HKA, Yuan G, Orkin SH. Genomic Determinants of Human Fetal and Adult Erythroid Gene Expression Blood. 120: 1227-1227. DOI: 10.1182/Blood.V120.21.1227.1227 |
0.01 |
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| 2012 |
Walker SR, Cerchietti LC, Nicolais MC, Yuan G, Melnick A, Frank DA. Abstract 971: Identification of BCL6 targeted therapies for breast cancer through gene expression networks Cancer Research. 72: 971-971. DOI: 10.1158/1538-7445.Am2012-971 |
0.01 |
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| 2012 |
Baena E, Shao Z, Linn D, Hamblen M, Glass K, Saumyadipta P, Fujiwara Y, Godinho F, Kim J, Al-Shhrour F, Nguyen M, Yuan G, Bronson RT, Loda M, Orkin SH, et al. Abstract 2965: ERG and ETV1 regulate a common transcriptional network in prostate cells but in an opposite fashion Cancer Research. 72: 2965-2965. DOI: 10.1158/1538-7445.Am2012-2965 |
0.01 |
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| 2011 |
Pinello L, Lo Bosco G, Hanlon B, Yuan GC. A motif-independent metric for DNA sequence specificity. Bmc Bioinformatics. 12: 408. PMID 22017798 DOI: 10.1186/1471-2105-12-408 |
0.01 |
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| 2011 |
Van Rechem C, Black JC, Abbas T, Allen A, Rinehart CA, Yuan GC, Dutta A, Whetstine JR. The SKP1-Cul1-F-box and leucine-rich repeat protein 4 (SCF-FbxL4) ubiquitin ligase regulates lysine demethylase 4A (KDM4A)/Jumonji domain-containing 2A (JMJD2A) protein. The Journal of Biological Chemistry. 286: 30462-70. PMID 21757720 DOI: 10.1074/Jbc.M111.273508 |
0.01 |
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| 2011 |
Yuan GC. Prediction of epigenetic target sites by using genomic DNA sequence Handbook of Research On Computational and Systems Biology: Interdisciplinary Applications. 187-201. DOI: 10.4018/978-1-60960-491-2.ch008 |
0.01 |
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| 2010 |
Larson JL, Yuan GC. Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model. Bmc Bioinformatics. 11: 557. PMID 21073706 DOI: 10.1186/1471-2105-11-557 |
0.01 |
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| 2010 |
Rao S, Zhen S, Roumiantsev S, McDonald LT, Yuan GC, Orkin SH. Differential roles of Sall4 isoforms in embryonic stem cell pluripotency. Molecular and Cellular Biology. 30: 5364-80. PMID 20837710 DOI: 10.1128/Mcb.00419-10 |
0.01 |
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| 2010 |
Fang R, Barbera AJ, Xu Y, Rutenberg M, Leonor T, Bi Q, Lan F, Mei P, Yuan GC, Lian C, Peng J, Cheng D, Sui G, Kaiser UB, Shi Y, et al. Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation. Molecular Cell. 39: 222-33. PMID 20670891 DOI: 10.1016/J.Molcel.2010.07.008 |
0.01 |
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| 2010 |
Chastanet A, Vitkup D, Yuan GC, Norman TM, Liu JS, Losick RM. Broadly heterogeneous activation of the master regulator for sporulation in Bacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America. 107: 8486-91. PMID 20404177 DOI: 10.1073/Pnas.1002499107 |
0.01 |
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| 2010 |
Liu Y, Shao Z, Yuan GC. Prediction of Polycomb target genes in mouse embryonic stem cells. Genomics. 96: 17-26. PMID 20353814 DOI: 10.1016/J.Ygeno.2010.03.012 |
0.01 |
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| 2010 |
Lantermann AB, Straub T, Strålfors A, Yuan GC, Ekwall K, Korber P. Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae. Nature Structural & Molecular Biology. 17: 251-7. PMID 20118936 DOI: 10.1038/Nsmb.1741 |
0.01 |
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| 2010 |
Larson J, Yuan G. A hidden Markov model for detecting multi-gene chromatin domains Bmc Bioinformatics. 11. DOI: 10.1186/1471-2105-11-S10-O5 |
0.01 |
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| 2009 |
Shen X, Kim W, Fujiwara Y, Simon MD, Liu Y, Mysliwiec MR, Yuan GC, Lee Y, Orkin SH. Jumonji modulates polycomb activity and self-renewal versus differentiation of stem cells. Cell. 139: 1303-14. PMID 20064376 DOI: 10.1016/J.Cell.2009.12.003 |
0.01 |
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| 2009 |
Wippo CJ, Krstulovic BS, Ertel F, Musladin S, Blaschke D, Stürzl S, Yuan GC, Hörz W, Korber P, Barbaric S. Differential cofactor requirements for histone eviction from two nucleosomes at the yeast PHO84 promoter are determined by intrinsic nucleosome stability. Molecular and Cellular Biology. 29: 2960-81. PMID 19307305 DOI: 10.1128/Mcb.01054-08 |
0.01 |
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| 2009 |
Yuan GC. Targeted recruitment of histone modifications in humans predicted by genomic sequences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 341-55. PMID 19193151 DOI: 10.1089/Cmb.2008.18Tt |
0.01 |
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| 2009 |
Di Gesù V, Lo Bosco G, Pinello L, Yuan GC, Corona DF. A multi-layer method to study genome-scale positions of nucleosomes. Genomics. 93: 140-5. PMID 18951969 DOI: 10.1016/J.Ygeno.2008.09.012 |
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| 2008 |
Shen X, Liu Y, Hsu YJ, Fujiwara Y, Kim J, Mao X, Yuan GC, Orkin SH. EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency. Molecular Cell. 32: 491-502. PMID 19026780 DOI: 10.1016/J.Molcel.2008.10.016 |
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| 2008 |
Yuan GC, Liu JS. Genomic sequence is highly predictive of local nucleosome depletion. Plos Computational Biology. 4: e13. PMID 18225943 DOI: 10.1371/Journal.Pcbi.0040013 |
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| 2006 |
Yuan GC, Ma P, Zhong W, Liu JS. Statistical assessment of the global regulatory role of histone acetylation in Saccharomyces cerevisiae. Genome Biology. 7: R70. PMID 16884527 DOI: 10.1186/Gb-2006-7-8-R70 |
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| 2005 |
Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ. Genome-scale identification of nucleosome positions in S. cerevisiae. Science (New York, N.Y.). 309: 626-30. PMID 15961632 DOI: 10.1126/Science.1112178 |
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