| Year |
Citation |
Score |
| 2020 |
Miao Z, Adamiak RW, Antczak M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Cheng Y, Chou FC, Das R, Dokholyan NV, Ding F, Geniesse C, Jiang Y, Joshi A, ... ... Golden BL, et al. RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers. Rna (New York, N.Y.). PMID 32371455 DOI: 10.1261/Rna.075341.120 |
0.453 |
|
| 2017 |
Chen H, Giese TJ, Golden BL, York DM. Divalent metal ion activation of a guanine general base in the hammerhead ribozyme: insights from molecular simulations. Biochemistry. PMID 28530384 DOI: 10.1021/Acs.Biochem.6B01192 |
0.482 |
|
| 2015 |
Mir A, Golden BL. Two active site divalent ions in the crystal structure of the hammerhead ribozyme bound to a transition state analog. Biochemistry. PMID 26551631 DOI: 10.1021/Acs.Biochem.5B01139 |
0.434 |
|
| 2015 |
Mir A, Chen J, Robinson K, Lendy E, Goodman J, Neau DB, Golden BL. Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction. Biochemistry. PMID 26398724 DOI: 10.1021/Acs.Biochem.5B00824 |
0.437 |
|
| 2014 |
DeRose VJ, Plakos K, Golden BL, White J, Osborn M, Moghaddam A. RNA Crosslinking and Click Chemistry with Platinum Compounds Biophysical Journal. 106: 494a-495a. DOI: 10.1016/J.Bpj.2013.11.2766 |
0.493 |
|
| 2013 |
Thaplyal P, Ganguly A, Golden BL, Hammes-Schiffer S, Bevilacqua PC. Thio effects and an unconventional metal ion rescue in the genomic hepatitis delta virus ribozyme. Biochemistry. 52: 6499-514. PMID 24001219 DOI: 10.1021/Bi4000673 |
0.595 |
|
| 2013 |
Chen J, Ganguly A, Miswan Z, Hammes-Schiffer S, Bevilacqua PC, Golden BL. Identification of the catalytic Mg²⺠ion in the hepatitis delta virus ribozyme. Biochemistry. 52: 557-67. PMID 23311293 DOI: 10.1021/Bi3013092 |
0.66 |
|
| 2011 |
Golden BL. Two distinct catalytic strategies in the hepatitis δ virus ribozyme cleavage reaction. Biochemistry. 50: 9424-33. PMID 22003985 DOI: 10.1021/Bi201157T |
0.551 |
|
| 2011 |
Mitra S, Laederach A, Golden BL, Altman RB, Brenowitz M. RNA molecules with conserved catalytic cores but variable peripheries fold along unique energetically optimized pathways. Rna (New York, N.Y.). 17: 1589-603. PMID 21712400 DOI: 10.1261/Rna.2694811 |
0.496 |
|
| 2011 |
Veeraraghavan N, Ganguly A, Golden BL, Bevilacqua PC, Hammes-Schiffer S. Mechanistic strategies in the HDV ribozyme: chelated and diffuse metal ion interactions and active site protonation. The Journal of Physical Chemistry. B. 115: 8346-57. PMID 21644800 DOI: 10.1021/Jp203202E |
0.643 |
|
| 2011 |
Veeraraghavan N, Ganguly A, Chen JH, Bevilacqua PC, Hammes-Schiffer S, Golden BL. Metal binding motif in the active site of the HDV ribozyme binds divalent and monovalent ions. Biochemistry. 50: 2672-82. PMID 21348498 DOI: 10.1021/Bi2000164 |
0.72 |
|
| 2011 |
Joshi R, Ho KK, Tenney K, Chen JH, Golden BL, Gimble FS. Evolution of I-SceI homing endonucleases with increased DNA recognition site specificity. Journal of Molecular Biology. 405: 185-200. PMID 21029741 DOI: 10.1016/J.Jmb.2010.10.029 |
0.578 |
|
| 2010 |
Chen JH, Yajima R, Chadalavada DM, Chase E, Bevilacqua PC, Golden BL. A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage. Biochemistry. 49: 6508-18. PMID 20677830 DOI: 10.1021/Bi100670P |
0.766 |
|
| 2010 |
Kieft JS, Chase E, Costantino DA, Golden BL. Identification and characterization of anion binding sites in RNA. Rna (New York, N.Y.). 16: 1118-23. PMID 20410239 DOI: 10.1261/Rna.2072710 |
0.578 |
|
| 2009 |
Gong B, Chen JH, Bevilacqua PC, Golden BL, Carey PR. Competition between Co(NH(3)(6)3+ and inner sphere Mg2+ ions in the HDV ribozyme. Biochemistry. 48: 11961-70. PMID 19888753 DOI: 10.1021/Bi901091V |
0.714 |
|
| 2009 |
Gong B, Chen JH, Yajima R, Chen Y, Chase E, Chadalavada DM, Golden BL, Carey PR, Bevilacqua PC. Raman crystallography of RNA. Methods (San Diego, Calif.). 49: 101-11. PMID 19409996 DOI: 10.1016/J.Ymeth.2009.04.016 |
0.759 |
|
| 2009 |
Chen JH, Gong B, Bevilacqua PC, Carey PR, Golden BL. A catalytic metal ion interacts with the cleavage Site G.U wobble in the HDV ribozyme. Biochemistry. 48: 1498-507. PMID 19178151 DOI: 10.1021/Bi8020108 |
0.715 |
|
| 2008 |
Cerrone-Szakal AL, Chadalavada DM, Golden BL, Bevilacqua PC. Mechanistic characterization of the HDV genomic ribozyme: the cleavage site base pair plays a structural role in facilitating catalysis. Rna (New York, N.Y.). 14: 1746-60. PMID 18658121 DOI: 10.1261/Rna.1140308 |
0.643 |
|
| 2008 |
Gong B, Chen Y, Christian EL, Chen JH, Chase E, Chadalavada DM, Yajima R, Golden BL, Bevilacqua PC, Carey PR. Detection of innersphere interactions between magnesium hydrate and the phosphate backbone of the HDV ribozyme using Raman crystallography. Journal of the American Chemical Society. 130: 9670-2. PMID 18593125 DOI: 10.1021/Ja801861S |
0.685 |
|
| 2008 |
Warrier R, Linger BR, Golden BL, Kuhn RJ. Role of sindbis virus capsid protein region II in nucleocapsid core assembly and encapsidation of genomic RNA. Journal of Virology. 82: 4461-70. PMID 18305029 DOI: 10.1128/Jvi.01936-07 |
0.747 |
|
| 2008 |
Paukstelis PJ, Chen JH, Chase E, Lambowitz AM, Golden BL. Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA. Nature. 451: 94-7. PMID 18172503 DOI: 10.1038/Nature06413 |
0.696 |
|
| 2007 |
Gong B, Chen JH, Chase E, Chadalavada DM, Yajima R, Golden BL, Bevilacqua PC, Carey PR. Direct measurement of a pK(a) near neutrality for the catalytic cytosine in the genomic HDV ribozyme using Raman crystallography. Journal of the American Chemical Society. 129: 13335-42. PMID 17924627 DOI: 10.1021/Ja0743893 |
0.693 |
|
| 2007 |
Golden BL. Preparation and crystallization of RNA. Methods in Molecular Biology (Clifton, N.J.). 363: 239-57. PMID 17272845 DOI: 10.1007/978-1-59745-209-0_12 |
0.521 |
|
| 2005 |
Chase E, Golden BL. Crystallization and preliminary diffraction analysis of a group I ribozyme from bacteriophage Twort. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 71-4. PMID 16508095 DOI: 10.1107/S1744309104028337 |
0.553 |
|
| 2005 |
Golden BL, Kim H, Chase E. Crystal structure of a phage Twort group I ribozyme-product complex. Nature Structural & Molecular Biology. 12: 82-9. PMID 15580277 DOI: 10.1038/Nsmb868 |
0.728 |
|
| 2004 |
Linger BR, Kunovska L, Kuhn RJ, Golden BL. Sindbis virus nucleocapsid assembly: RNA folding promotes capsid protein dimerization. Rna (New York, N.Y.). 10: 128-38. PMID 14681591 DOI: 10.1261/Rna.5127104 |
0.76 |
|
| 2003 |
Fang XW, Srividya N, Golden BL, Sosnick TR, Pan T. Stepwise conversion of a mesophilic to a thermophilic ribozyme. Journal of Molecular Biology. 330: 177-83. PMID 12823959 DOI: 10.1016/S0022-2836(03)00582-5 |
0.479 |
|
| 2003 |
Golden BL, Kundrot CE. RNA crystallization. Journal of Structural Biology. 142: 98-107. PMID 12718923 DOI: 10.1016/S1047-8477(03)00042-X |
0.436 |
|
| 2001 |
Fang XW, Golden BL, Littrell K, Shelton V, Thiyagarajan P, Pan T, Sosnick TR. The thermodynamic origin of the stability of a thermophilic ribozyme. Proceedings of the National Academy of Sciences of the United States of America. 98: 4355-60. PMID 11296284 DOI: 10.1073/Pnas.071050698 |
0.466 |
|
| 2000 |
Golden BL. Heavy atom derivatives of RNA. Methods in Enzymology. 317: 124-32. PMID 10829276 DOI: 10.1016/S0076-6879(00)17010-7 |
0.503 |
|
| 1999 |
Cech TR, Golden BL. 13 Building a Catalytic Active Site Using Only RNA Cold Spring Harbor Monograph Archive. 37: 321-349. DOI: 10.1101/087969589.37.321 |
0.64 |
|
| 1998 |
Golden BL, Gooding AR, Podell ER, Cech TR. A preorganized active site in the crystal structure of the Tetrahymena ribozyme. Science (New York, N.Y.). 282: 259-64. PMID 9841391 DOI: 10.1126/Science.282.5387.259 |
0.637 |
|
| 1998 |
Davies C, Bussiere DE, Golden BL, Porter SJ, Ramakrishnan V, White SW. Ribosomal proteins S5 and L6: high-resolution crystal structures and roles in protein synthesis and antibiotic resistance. Journal of Molecular Biology. 279: 873-88. PMID 9642068 DOI: 10.1006/Jmbi.1998.1780 |
0.437 |
|
| 1997 |
Golden BL, Podell ER, Gooding AR, Cech TR. Crystals by design: a strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron. Journal of Molecular Biology. 270: 711-23. PMID 9245599 DOI: 10.1006/Jmbi.1997.1155 |
0.636 |
|
| 1996 |
Golden BL, Gooding AR, Podell ER, Cech TR. X-ray crystallography of large RNAs: heavy-atom derivatives by RNA engineering. Rna (New York, N.Y.). 2: 1295-305. PMID 8972777 |
0.605 |
|
| 1996 |
Cate JH, Gooding AR, Podell E, Zhou K, Golden BL, Szewczak AA, Kundrot CE, Cech TR, Doudna JA. RNA tertiary structure mediation by adenosine platforms. Science (New York, N.Y.). 273: 1696-9. PMID 8781229 DOI: 10.1126/Science.273.5282.1696 |
0.721 |
|
| 1996 |
Cate JH, Gooding AR, Podell E, Zhou K, Golden BL, Kundrot CE, Cech TR, Doudna JA. Crystal structure of a group I ribozyme domain: principles of RNA packing. Science (New York, N.Y.). 273: 1678-85. PMID 8781224 DOI: 10.1126/Science.273.5282.1678 |
0.709 |
|
| 1996 |
Golden BL, Cech TR. Conformational switches involved in orchestrating the successive steps of group I RNA splicing. Biochemistry. 35: 3754-63. PMID 8619996 DOI: 10.1021/Bi952599Z |
0.599 |
|
| 1995 |
Ramakrishnan V, Davies C, Gerchman SE, Golden BL, Hoffmann DW, Jaishree TN, Kyila JH, Porter S, White SW. Structures of prokaryotic ribosomal proteins: implications for RNA binding and evolution. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 73: 979-86. PMID 8722013 |
0.338 |
|
| 1993 |
Golden BL, Ramakrishnan V, White SW. Ribosomal protein L6: structural evidence of gene duplication from a primitive RNA binding protein. The Embo Journal. 12: 4901-8. PMID 8262035 DOI: 10.1002/J.1460-2075.1993.Tb06184.X |
0.503 |
|
| 1993 |
Golden BL, Hoffman DW, Ramakrishnan V, White SW. Ribosomal protein S17: characterization of the three-dimensional structure by 1H and 15N NMR. Biochemistry. 32: 12812-20. PMID 8251502 DOI: 10.1021/Bi00210A033 |
0.449 |
|
| 1991 |
Hoffman DW, Query CC, Golden BL, White SW, Keene JD. RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins. Proceedings of the National Academy of Sciences of the United States of America. 88: 2495-9. PMID 1826055 DOI: 10.1073/Pnas.88.6.2495 |
0.547 |
|
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