| Year |
Citation |
Score |
| 2023 |
van Tilburg MPA, Marrink SJ, König M, Grünewald F. Shocker─A Molecular Dynamics Protocol and Tool for Accelerating and Analyzing the Effects of Osmotic Shocks. Journal of Chemical Theory and Computation. 20: 212-223. PMID 38109481 DOI: 10.1021/acs.jctc.3c00961 |
0.417 |
|
| 2023 |
Stępień P, Świątek S, Robles MYY, Markiewicz-Mizera J, Balakrishnan D, Inaba-Inoue S, De Vries AH, Beis K, Marrink SJ, Heddle JG. CRAFTing Delivery of Membrane Proteins into Protocells using Nanodiscs. Acs Applied Materials & Interfaces. 15: 56689-701. PMID 38015973 DOI: 10.1021/acsami.3c11894 |
0.318 |
|
| 2023 |
Ingólfsson HI, Rizuan A, Liu X, Mohanty P, Souza PCT, Marrink SJ, Bowers MT, Mittal J, Berry J. Multiscale simulations reveal TDP-43 molecular level interactions driving condensation. Biophysical Journal. PMID 37853696 DOI: 10.1016/j.bpj.2023.10.016 |
0.317 |
|
| 2023 |
Blanco-González A, Marrink SJ, Piñeiro Á, García-Fandiño R. Molecular insights into the effects of focused ultrasound mechanotherapy on lipid bilayers: Unlocking the keys to design effective treatments. Journal of Colloid and Interface Science. 650: 1201-1210. PMID 37478737 DOI: 10.1016/j.jcis.2023.07.077 |
0.365 |
|
| 2023 |
Melcrová A, Maity S, Melcr J, de Kok NAW, Gabler M, van der Eyden J, Stensen W, Svendsen JSM, Driessen AJM, Marrink SJ, Roos WH. Lateral membrane organization as target of an antimicrobial peptidomimetic compound. Nature Communications. 14: 4038. PMID 37419980 DOI: 10.1038/s41467-023-39726-5 |
0.311 |
|
| 2023 |
Empereur-Mot C, Pedersen KB, Capelli R, Crippa M, Caruso C, Perrone M, Souza PCT, Marrink SJ, Pavan GM. Automatic Optimization of Lipid Models in the Martini Force Field Using . Journal of Chemical Information and Modeling. 63: 3827-3838. PMID 37279107 DOI: 10.1021/acs.jcim.3c00530 |
0.37 |
|
| 2023 |
Pezeshkian W, Grünewald F, Narykov O, Lu S, Arkhipova V, Solodovnikov A, Wassenaar TA, Marrink SJ, Korkin D. Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling. Structure (London, England : 1993). PMID 36870335 DOI: 10.1016/j.str.2023.02.006 |
0.347 |
|
| 2023 |
Hilpert C, Beranger L, Souza PCT, Vainikka PA, Nieto V, Marrink SJ, Monticelli L, Launay G. Facilitating CG Simulations with MAD: The MArtini Database Server. Journal of Chemical Information and Modeling. PMID 36656159 DOI: 10.1021/acs.jcim.2c01375 |
0.354 |
|
| 2022 |
De Franceschi N, Pezeshkian W, Fragasso A, Bruininks BMH, Tsai S, Marrink SJ, Dekker C. Synthetic Membrane Shaper for Controlled Liposome Deformation. Acs Nano. PMID 36441529 DOI: 10.1021/acsnano.2c06125 |
0.332 |
|
| 2022 |
Grünewald F, Punt MH, Jefferys EE, Vainikka PA, König M, Virtanen V, Meyer TA, Pezeshkian W, Gormley AJ, Karonen M, Sansom MSP, Souza PCT, Marrink SJ. Martini 3 Coarse-Grained Force Field for Carbohydrates. Journal of Chemical Theory and Computation. PMID 36342474 DOI: 10.1021/acs.jctc.2c00757 |
0.349 |
|
| 2022 |
Frallicciardi J, Melcr J, Siginou P, Marrink SJ, Poolman B. Membrane thickness, lipid phase and sterol type are determining factors in the permeability of membranes to small solutes. Nature Communications. 13: 1605. PMID 35338137 DOI: 10.1038/s41467-022-29272-x |
0.343 |
|
| 2021 |
Azadi-Chegeni F, Thallmair S, Ward ME, Perin G, Marrink SJ, Baldus M, Morosinotto T, Pandit A. Protein dynamics and lipid affinity of monomeric, zeaxanthin-binding LHCII in thylakoid membranes. Biophysical Journal. PMID 34971616 DOI: 10.1016/j.bpj.2021.12.039 |
0.358 |
|
| 2021 |
Machado N, Bruininks BMH, Singh P, Dos Santos L, Dal Pizzol C, Dieamant GC, Kruger O, Martin AA, Marrink SJ, Souza PCT, Favero PP. Complex nanoemulsion for vitamin delivery: droplet organization and interaction with skin membranes. Nanoscale. PMID 34913938 DOI: 10.1039/d1nr04610a |
0.312 |
|
| 2021 |
Bruininks BMH, Thie AS, Souza PCT, Wassenaar TA, Faraji S, Marrink SJ. Sequential Voxel-Based Leaflet Segmentation of Complex Lipid Morphologies. Journal of Chemical Theory and Computation. PMID 34609876 DOI: 10.1021/acs.jctc.1c00446 |
0.67 |
|
| 2021 |
Thallmair S, Javanainen M, Fábián B, Martinez-Seara H, Marrink SJ. Nonconverged Constraints Cause Artificial Temperature Gradients in Lipid Bilayer Simulations. The Journal of Physical Chemistry. B. 125: 9537-9546. PMID 34398598 DOI: 10.1021/acs.jpcb.1c03665 |
0.393 |
|
| 2021 |
Tsanai M, Frederix PWJM, Schroer CFE, Souza PCT, Marrink SJ. Coacervate formation studied by explicit solvent coarse-grain molecular dynamics with the Martini model. Chemical Science. 12: 8521-8530. PMID 34221333 DOI: 10.1039/d1sc00374g |
0.317 |
|
| 2021 |
Liu Y, de Vries AH, Pezeshkian W, Marrink SJ. Capturing Membrane Phase Separation by Dual Resolution Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. PMID 34165988 DOI: 10.1021/acs.jctc.1c00151 |
0.341 |
|
| 2021 |
Kjølbye LR, De Maria L, Wassenaar TA, Abdizadeh H, Marrink SJ, Ferkinghoff-Borg J, Schiøtt B. General Protocol for Constructing Molecular Models of Nanodiscs. Journal of Chemical Information and Modeling. PMID 34048229 DOI: 10.1021/acs.jcim.1c00157 |
0.376 |
|
| 2021 |
Souza PCT, Limongelli V, Wu S, Marrink SJ, Monticelli L. Perspectives on High-Throughput Ligand/Protein Docking With Martini MD Simulations. Frontiers in Molecular Biosciences. 8: 657222. PMID 33855050 DOI: 10.3389/fmolb.2021.657222 |
0.318 |
|
| 2021 |
Souza PCT, Alessandri R, Barnoud J, Thallmair S, Faustino I, Grünewald F, Patmanidis I, Abdizadeh H, Bruininks BMH, Wassenaar TA, Kroon PC, Melcr J, Nieto V, Corradi V, Khan HM, ... ... Marrink SJ, et al. Martini 3: a general purpose force field for coarse-grained molecular dynamics. Nature Methods. PMID 33782607 DOI: 10.1038/s41592-021-01098-3 |
0.328 |
|
| 2021 |
Pezeshkian W, Marrink SJ. Simulating realistic membrane shapes. Current Opinion in Cell Biology. 71: 103-111. PMID 33721706 DOI: 10.1016/j.ceb.2021.02.009 |
0.349 |
|
| 2021 |
Grünewald F, Kroon PC, Souza PCT, Marrink SJ. Protocol for Simulations of PEGylated Proteins with Martini 3. Methods in Molecular Biology (Clifton, N.J.). 2199: 315-335. PMID 33125658 DOI: 10.1007/978-1-0716-0892-0_18 |
0.31 |
|
| 2020 |
Grünewald F, Souza PCT, Abdizadeh H, Barnoud J, de Vries AH, Marrink SJ. Titratable Martini model for constant pH simulations. The Journal of Chemical Physics. 153: 024118. PMID 32668918 DOI: 10.1063/5.0014258 |
0.311 |
|
| 2020 |
Pezeshkian W, König M, Wassenaar TA, Marrink SJ. Backmapping triangulated surfaces to coarse-grained membrane models. Nature Communications. 11: 2296. PMID 32385270 DOI: 10.1038/s41467-020-16094-y |
0.396 |
|
| 2020 |
Liu Y, De Vries AH, Barnoud J, Pezeshkian W, Melcr J, Marrink SJ. Dual Resolution Membrane Simulations Using Virtual Sites. The Journal of Physical Chemistry. B. PMID 32314586 DOI: 10.1021/acs.jpcb.0c01842 |
0.392 |
|
| 2020 |
Liguori N, Croce R, Marrink SJ, Thallmair S. Molecular dynamics simulations in photosynthesis. Photosynthesis Research. PMID 32297102 DOI: 10.1007/S11120-020-00741-Y |
0.338 |
|
| 2020 |
Schroer CFE, Baldauf L, van Buren L, Wassenaar TA, Melo MN, Koenderink GH, Marrink SJ. Charge-dependent interactions of monomeric and filamentous actin with lipid bilayers. Proceedings of the National Academy of Sciences of the United States of America. PMID 32123101 DOI: 10.1073/pnas.1914884117 |
0.314 |
|
| 2020 |
Khan HM, Telles de Souza PC, Thallmair S, Barnoud J, De Vries AH, Marrink SJ, Reuter N. Capturing choline-aromatics cation-π interactions in the MARTINI force field. Journal of Chemical Theory and Computation. PMID 32096995 DOI: 10.1021/Acs.Jctc.9B01194 |
0.37 |
|
| 2020 |
Bruininks BMH, Souza PCT, Marrink SJ. A Practical View of the Martini Force Field. Methods in Molecular Biology (Clifton, N.J.). 2022: 105-127. PMID 31396901 DOI: 10.1007/978-1-4939-9608-7_5 |
0.301 |
|
| 2019 |
Liu Y, Barnoud J, Marrink SJ. Gangliosides Destabilize Lipid Phase Separation in Multicomponent Membranes. Biophysical Journal. PMID 31542224 DOI: 10.1016/j.bpj.2019.08.037 |
0.36 |
|
| 2019 |
Pezeshkian W, König M, Marrink SJ, Ipsen JH. A Multi-Scale Approach to Membrane Remodeling Processes. Frontiers in Molecular Biosciences. 6: 59. PMID 31396522 DOI: 10.3389/fmolb.2019.00059 |
0.336 |
|
| 2019 |
Koch S, Exterkate M, López CA, Patro M, Marrink SJ, Driessen AJM. Two distinct anionic phospholipid-dependent events involved in SecA-mediated protein translocation. Biochimica Et Biophysica Acta. Biomembranes. 183035. PMID 31394098 DOI: 10.1016/J.Bbamem.2019.183035 |
0.359 |
|
| 2019 |
Moghaddam KG, de Vries AH, Marrink SJ, Faraji S. Binding of quinazolinones to c-KIT G-quadruplex; an interplay between hydrogen bonding and π-π stacking. Biophysical Chemistry. 253: 106220. PMID 31302375 DOI: 10.1016/J.Bpc.2019.106220 |
0.599 |
|
| 2019 |
Thallmair S, Vainikka PA, Marrink SJ. Lipid Fingerprints and Cofactor Dynamics of Light-Harvesting Complex II in Different Membranes. Biophysical Journal. 116: 1446-1455. PMID 30954210 DOI: 10.1016/j.bpj.2019.03.009 |
0.374 |
|
| 2019 |
Corradi V, Sejdiu BI, Mesa-Galloso H, Abdizadeh H, Noskov SY, Marrink SJ, Tieleman DP. Emerging Diversity in Lipid-Protein Interactions. Chemical Reviews. PMID 30758191 DOI: 10.1021/Acs.Chemrev.8B00451 |
0.352 |
|
| 2019 |
Marrink SJ, Corradi V, Souza PCT, Ingólfsson HI, Tieleman DP, Sansom MSP. Computational Modeling of Realistic Cell Membranes. Chemical Reviews. PMID 30623647 DOI: 10.1021/Acs.Chemrev.8B00460 |
0.364 |
|
| 2019 |
Jefferys EE, Bruininks B, Souza PCT, Marrink S, Sansom MS. Towards Molecular Simulations of Juxtaposed Biomembranes Biophysical Journal. 116: 176a. DOI: 10.1016/J.Bpj.2018.11.980 |
0.383 |
|
| 2019 |
Buyan A, Cox CD, Barnoud J, Martinac B, Marrink S, Corry B. Understanding Piezo1's Relationship with Lipids Biophysical Journal. 116: 459a. DOI: 10.1016/J.Bpj.2018.11.2481 |
0.316 |
|
| 2018 |
Zhang M, Peyear T, Patmanidis I, Greathouse DV, Marrink SJ, Andersen OS, Ingólfsson HI. Fluorinated Alcohols' Effects on Lipid Bilayer Properties. Biophysical Journal. PMID 30077334 DOI: 10.1016/J.Bpj.2018.07.010 |
0.323 |
|
| 2018 |
Xue M, Cheng L, Faustino I, Guo W, Marrink SJ. Molecular Mechanism of Lipid Nanodisk Formation by Styrene-Maleic Acid Copolymers. Biophysical Journal. PMID 29980293 DOI: 10.1016/j.bpj.2018.06.018 |
0.427 |
|
| 2018 |
Corradi V, Mendez-Villuendas E, Ingólfsson HI, Gu RX, Siuda I, Melo MN, Moussatova A, DeGagné LJ, Sejdiu BI, Singh G, Wassenaar TA, Delgado Magnero K, Marrink SJ, Tieleman DP. Lipid-Protein Interactions Are Unique Fingerprints for Membrane Proteins. Acs Central Science. 4: 709-717. PMID 29974066 DOI: 10.1021/acscentsci.8b00143 |
0.376 |
|
| 2018 |
Sun F, Schroer CFE, Xu L, Yin H, Marrink SJ, Luo SZ. Molecular Dynamics of the Association of L-Selectin and FERM Regulated by PIP2. Biophysical Journal. 114: 1858-1868. PMID 29694864 DOI: 10.1016/J.Bpj.2018.02.034 |
0.336 |
|
| 2018 |
Su J, Thomas AS, Grabietz T, Landgraf C, Volkmer R, Marrink SJ, Williams C, Melo MN. The N-terminal amphipathic helix of Pex11p self-interacts to induce membrane remodelling during peroxisome fission. Biochimica Et Biophysica Acta. PMID 29501607 DOI: 10.1016/j.bbamem.2018.02.029 |
0.364 |
|
| 2018 |
Zavadlav J, Marrink SJ, Praprotnik M. Multiscale Simulation of Protein Hydration Using the SWINGER Dynamical Clustering Algorithm. Journal of Chemical Theory and Computation. 14: 1754-1761. PMID 29439560 DOI: 10.1021/acs.jctc.7b01129 |
0.301 |
|
| 2018 |
Van Eerden FJ, Melo MN, Frederix PWJM, Marrink SJ. Prediction of Thylakoid Lipid Binding Sites on Photosystem II. Biophysical Journal. 113: 2669-2681. PMID 29262360 DOI: 10.1016/j.bpj.2017.09.039 |
0.347 |
|
| 2018 |
Nedergaard Pedersen J, Frederix PWJM, Skov Pedersen J, Marrink SJ, Otzen DE. Role of Charge and Hydrophobicity in Liprotide Formation: A Molecular Dynamics Study with Experimental Constraints. Chembiochem : a European Journal of Chemical Biology. 19: 263-271. PMID 29156084 DOI: 10.1002/cbic.201700496 |
0.34 |
|
| 2018 |
Baoukina S, Ingolfsson HI, Marrink SJ, Tieleman DP. Lipid Organization in Simulations of Cell Membranes Biophysical Journal. 114: 379a. DOI: 10.1016/j.bpj.2017.11.2099 |
0.315 |
|
| 2017 |
Kondela T, Gallová J, Hauß T, Barnoud J, Marrink SJ, Kučerka N. Alcohol Interactions with Lipid Bilayers. Molecules (Basel, Switzerland). 22. PMID 29182554 DOI: 10.3390/molecules22122078 |
0.343 |
|
| 2017 |
Ingólfsson HI, Carpenter TS, Bhatia H, Bremer PT, Marrink SJ, Lightstone FC. Computational Lipidomics of the Neuronal Plasma Membrane. Biophysical Journal. PMID 29113676 DOI: 10.1016/J.Bpj.2017.10.017 |
0.312 |
|
| 2017 |
Hsu PC, Bruininks BMH, Jefferies D, Cesar Telles de Souza P, Lee J, Patel DS, Marrink SJ, Qi Y, Khalid S, Im W. CHARMM-GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides. Journal of Computational Chemistry. PMID 28776689 DOI: 10.1002/Jcc.24895 |
0.4 |
|
| 2017 |
Maingi V, Burns JR, Uusitalo JJ, Howorka S, Marrink SJ, Sansom MS. Stability and dynamics of membrane-spanning DNA nanopores. Nature Communications. 8: 14784. PMID 28317903 DOI: 10.1038/Ncomms14784 |
0.373 |
|
| 2017 |
Melo MN, Arnarez C, Sikkema H, Kumar N, Walko M, Berendsen HJ, Kocer A, Marrink SJ, Ingólfsson HI. High-throughput simulations reveal membrane-mediated effects of alcohols on MscL gating. Journal of the American Chemical Society. PMID 28122455 DOI: 10.1021/Jacs.6B11091 |
0.623 |
|
| 2016 |
Arnarez C, Marrink SJ, Periole X. Molecular mechanism of cardiolipin-mediated assembly of respiratory chain supercomplexes. Chemical Science. 7: 4435-4443. PMID 30155091 DOI: 10.1039/c5sc04664e |
0.342 |
|
| 2016 |
Venable RM, Ingólfsson HI, Lerner MG, Perrin BS, Camley BA, Marrink SJ, Brown FL, Pastor RW. Lipid and Peptide Diffusion in Bilayers: The Saffman-Delbrück Model and Periodic Boundary Conditions. The Journal of Physical Chemistry. B. PMID 27966982 DOI: 10.1021/Acs.Jpcb.6B09111 |
0.306 |
|
| 2016 |
van Eerden FJ, van den Berg T, Frederix PW, de Jong DH, Periole X, Marrink SJ. Molecular Dynamics of Photosystem II Embedded in the Thylakoid Membrane. The Journal of Physical Chemistry. B. PMID 27624992 DOI: 10.1021/acs.jpcb.6b06865 |
0.383 |
|
| 2016 |
Gu RX, Ingólfsson HI, De Vries AH, Marrink SJ, Tieleman DP. Ganglioside-Lipid and Ganglioside-Protein Interactions Revealed by Coarse-Grained and Atomistic Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. PMID 27610460 DOI: 10.1021/acs.jpcb.6b07142 |
0.388 |
|
| 2016 |
Ingólfsson HI, Arnarez C, Periole X, Marrink SJ. Computational 'microscopy' of cellular membranes. Journal of Cell Science. 129: 257-68. PMID 26743083 DOI: 10.1242/jcs.176040 |
0.34 |
|
| 2016 |
Maingi V, Uusitalo JJ, Lelimousin M, Howorka S, Marrink SJ, Sansom MSP. DNA-Origami Nanotubes and their Interaction with Membranes : Insights through Multiscale Molecular Dynamics Simulations Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2195 |
0.381 |
|
| 2016 |
Gu R, Ingolfsson HI, de Vries AH, Marrink SJ, Tieleman DP. Ganglioside and Protein-Ganglioside Interactions in Martini and Atomistic Molecular Dynamics Simulations Biophysical Journal. 110: 254a. DOI: 10.1016/J.BPJ.2015.11.1395 |
0.308 |
|
| 2015 |
Uytterhoeven V, Lauwers E, Maes I, Miskiewicz K, Melo MN, Swerts J, Kuenen S, Wittocx R, Corthout N, Marrink SJ, Munck S, Verstreken P. Hsc70-4 Deforms Membranes to Promote Synaptic Protein Turnover by Endosomal Microautophagy. Neuron. 88: 735-48. PMID 26590345 DOI: 10.1016/J.Neuron.2015.10.012 |
0.313 |
|
| 2015 |
Qi Y, Ingólfsson HI, Cheng X, Lee J, Marrink SJ, Im W. CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field. Journal of Chemical Theory and Computation. 11: 4486-4494. PMID 26575938 DOI: 10.1021/Acs.Jctc.5B00513 |
0.355 |
|
| 2015 |
Wassenaar TA, Pluhackova K, Moussatova A, Sengupta D, Marrink SJ, Tieleman DP, Böckmann RA. High-Throughput Simulations of Dimer and Trimer Assembly of Membrane Proteins. The DAFT Approach. Journal of Chemical Theory and Computation. 11: 2278-91. PMID 26574426 DOI: 10.1021/ct5010092 |
0.411 |
|
| 2015 |
Wassenaar TA, Ingólfsson HI, Böckmann RA, Tieleman DP, Marrink SJ. Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations. Journal of Chemical Theory and Computation. 11: 2144-55. PMID 26574417 DOI: 10.1021/acs.jctc.5b00209 |
0.368 |
|
| 2015 |
Arnarez C, Uusitalo JJ, Masman MF, Ingólfsson HI, de Jong DH, Melo MN, Periole X, de Vries AH, Marrink SJ. Dry Martini, a Coarse-Grained Force Field for Lipid Membrane Simulations with Implicit Solvent. Journal of Chemical Theory and Computation. 11: 260-75. PMID 26574224 DOI: 10.1021/ct500477k |
0.412 |
|
| 2015 |
de Jong DH, Liguori N, van den Berg T, Arnarez C, Periole X, Marrink SJ. Atomistic and Coarse Grain Topologies for the Cofactors Associated with the Photosystem II Core Complex. The Journal of Physical Chemistry. B. 119: 7791-803. PMID 26053327 DOI: 10.1021/Acs.Jpcb.5B00809 |
0.302 |
|
| 2015 |
van Eerden FJ, de Jong DH, de Vries AH, Wassenaar TA, Marrink SJ. Characterization of thylakoid lipid membranes from cyanobacteria and higher plants by molecular dynamics simulations. Biochimica Et Biophysica Acta. 1848: 1319-30. PMID 25749153 DOI: 10.1016/j.bbamem.2015.02.025 |
0.355 |
|
| 2015 |
Wassenaar TA, Pluhackova K, Moussatova A, Sengupta D, Marrink SJ, Tieleman DP, Böckmann RA. High-throughput simulations of dimer and trimer assembly of membrane proteins. The DAFT approach Journal of Chemical Theory and Computation. 11: 2278-2291. DOI: 10.1021/ct5010092 |
0.337 |
|
| 2015 |
Wassenaar TA, Pluhackova K, Moussatova A, Sengupta D, Marrink SJ, Tieleman DP, Böckmann RA. Landscapes of Membrane Protein Interactions from High-Throughput MD Simulations using the Daft Approach Biophysical Journal. 108: 526a. DOI: 10.1016/J.BPJ.2014.11.2885 |
0.346 |
|
| 2014 |
Zavadlav J, Melo MN, Cunha AV, de Vries AH, Marrink SJ, Praprotnik M. Adaptive Resolution Simulation of MARTINI Solvents. Journal of Chemical Theory and Computation. 10: 2591-8. PMID 26580779 DOI: 10.1021/ct5001523 |
0.321 |
|
| 2014 |
Wassenaar TA, Pluhackova K, Böckmann RA, Marrink SJ, Tieleman DP. Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models. Journal of Chemical Theory and Computation. 10: 676-90. PMID 26580045 DOI: 10.1021/ct400617g |
0.313 |
|
| 2014 |
Moiset G, López CA, Bartelds R, Syga L, Rijpkema E, Cukkemane A, Baldus M, Poolman B, Marrink SJ. Disaccharides impact the lateral organization of lipid membranes. Journal of the American Chemical Society. 136: 16167-75. PMID 25316578 DOI: 10.1021/Ja505476C |
0.355 |
|
| 2014 |
Ingólfsson HI, Melo MN, van Eerden FJ, Arnarez C, Lopez CA, Wassenaar TA, Periole X, de Vries AH, Tieleman DP, Marrink SJ. Lipid organization of the plasma membrane. Journal of the American Chemical Society. 136: 14554-9. PMID 25229711 DOI: 10.1021/ja507832e |
0.323 |
|
| 2014 |
Ingólfsson HI, Thakur P, Herold KF, Hobart EA, Ramsey NB, Periole X, de Jong DH, Zwama M, Yilmaz D, Hall K, Maretzky T, Hemmings HC, Blobel C, Marrink SJ, Koçer A, et al. Phytochemicals perturb membranes and promiscuously alter protein function. Acs Chemical Biology. 9: 1788-98. PMID 24901212 DOI: 10.1021/Cb500086E |
0.35 |
|
| 2014 |
Pannuzzo M, De Jong DH, Raudino A, Marrink SJ. Simulation of polyethylene glycol and calcium-mediated membrane fusion. The Journal of Chemical Physics. 140: 124905. PMID 24697479 DOI: 10.1063/1.4869176 |
0.351 |
|
| 2014 |
Zavadlav J, Melo MN, Marrink SJ, Praprotnik M. Adaptive resolution simulation of an atomistic protein in MARTINI water. The Journal of Chemical Physics. 140: 054114. PMID 24511929 DOI: 10.1063/1.4863329 |
0.304 |
|
| 2014 |
Raudino A, Marrink SJ, Pannuzzo M. Anomalous viscosity effect in the early stages of the ion-assisted adhesion/fusion event between lipid bilayers: a theoretical and computational study. The Journal of Chemical Physics. 138: 234901. PMID 23802979 DOI: 10.1063/1.4809993 |
0.347 |
|
| 2014 |
Akhshi P, Uusitalo J, Ingolfsson H, Marrink S, Tieleman DP. Development of Coarse-Grained Martini Model for Nucleic Acid Structures Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.3896 |
0.405 |
|
| 2014 |
Arnarez C, Marrink S, Periole X. Cardiolipins at the Interface of Supercomplexes in the Respiratory Chain Biophysical Journal. 106: 27. DOI: 10.1016/J.Bpj.2013.11.204 |
0.395 |
|
| 2014 |
Periole X, Sakmar TP, Marrink SJ, Huber T. Supramolecular Organization of Rod Outer Segment Membrane: New Rhodopsin Dimer Interface and Insights from the β2Ar-Gs Complex Biophysical Journal. 106: 305a-306a. DOI: 10.1016/J.Bpj.2013.11.1772 |
0.344 |
|
| 2014 |
Eerden FJv, Jong DHd, Periole X, Marrink S. Simulation of Photosystem Ii Dynamics in the Thylakoid Membrane Biophysical Journal. 106: 1-1. DOI: 10.1016/J.Bpj.2013.11.1025 |
0.466 |
|
| 2013 |
de Jong DH, Singh G, Bennett WF, Arnarez C, Wassenaar TA, Schäfer LV, Periole X, Tieleman DP, Marrink SJ. Improved Parameters for the Martini Coarse-Grained Protein Force Field. Journal of Chemical Theory and Computation. 9: 687-97. PMID 26589065 DOI: 10.1021/ct300646g |
0.317 |
|
| 2013 |
López CA, Sovova Z, van Eerden FJ, de Vries AH, Marrink SJ. Martini Force Field Parameters for Glycolipids. Journal of Chemical Theory and Computation. 9: 1694-708. PMID 26587629 DOI: 10.1021/ct3009655 |
0.405 |
|
| 2013 |
Bulacu M, Goga N, Zhao W, Rossi G, Monticelli L, Periole X, Tieleman DP, Marrink SJ. Improved Angle Potentials for Coarse-Grained Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 9: 3282-92. PMID 26584087 DOI: 10.1021/ct400219n |
0.328 |
|
| 2013 |
de Jong DH, Lopez CA, Marrink SJ. Molecular view on protein sorting into liquid-ordered membrane domains mediated by gangliosides and lipid anchors. Faraday Discussions. 161: 347-63; discussion 4. PMID 23805749 DOI: 10.1039/C2FD20086D |
0.358 |
|
| 2013 |
Moiset G, Cirac AD, Stuart MC, Marrink SJ, Sengupta D, Poolman B. Dual action of BPC194: a membrane active peptide killing bacterial cells. Plos One. 8: e61541. PMID 23620763 DOI: 10.1371/Journal.Pone.0061541 |
0.303 |
|
| 2013 |
Wassenaar TA, Ingólfsson HI, Priess M, Marrink SJ, Schäfer LV. Mixing MARTINI: electrostatic coupling in hybrid atomistic-coarse-grained biomolecular simulations. The Journal of Physical Chemistry. B. 117: 3516-30. PMID 23406326 DOI: 10.1021/jp311533p |
0.342 |
|
| 2013 |
Periole X, Marrink SJ. The Martini coarse-grained force field. Methods in Molecular Biology (Clifton, N.J.). 924: 533-65. PMID 23034762 DOI: 10.1007/978-1-62703-017-5_20 |
0.336 |
|
| 2013 |
Smirnova YG, Aeffner S, Risselada HJ, Salditt T, Marrink SJ, Müller M, Knecht V. Interbilayer repulsion forces between tension-free lipid bilayers from simulation. Soft Matter. 9: 10705-10718. DOI: 10.1039/C3Sm51771C |
0.418 |
|
| 2013 |
Uusitalo JJ, Ingólfsson HI, Marrink S. Covering All the Bases: A Martini Coarse-Grained Force Field for DNA Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.952 |
0.362 |
|
| 2013 |
Wassenaar TA, Moussatova A, Marrink S, Tieleman P. The Daft Approach for in Silico Prediction of Transmembrane Peptide Complexes Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.3667 |
0.725 |
|
| 2012 |
Baoukina S, Marrink SJ, Tieleman DP. Molecular structure of membrane tethers. Biophysical Journal. 102: 1866-71. PMID 22768942 DOI: 10.1016/j.bpj.2012.03.048 |
0.398 |
|
| 2012 |
Knepp AM, Periole X, Marrink SJ, Sakmar TP, Huber T. Rhodopsin forms a dimer with cytoplasmic helix 8 contacts in native membranes Biochemistry. 51: 1819-1821. PMID 22352709 DOI: 10.1021/Bi3001598 |
0.385 |
|
| 2012 |
Hell AJv, Gueth DM, Melo MN, Marrink SJ, Verheij M. Abstract 2750: Short-chain lipids catalyse intracellular drug accumulation by a transient molecular gateway that allows plasma membrane traversal Cancer Research. 72: 2750-2750. DOI: 10.1158/1538-7445.Am2012-2750 |
0.327 |
|
| 2012 |
Deplazes E, Jayatilaka D, Louhivuori M, Marrink S, Corry B. A Model of the Open Pore MscL Based on Experimental Data and Restrained Coarse Grained Simulations Biophysical Journal. 102: 1-1. DOI: 10.1016/J.Bpj.2011.11.680 |
0.4 |
|
| 2012 |
Moiset G, Cirac AD, Mika JT, Koçer A, Stuart MC, Sengupta D, Marrink S, Poolman B. “Multi-Hit” Action of Membrane Active Peptides: Towards Understanding Bacterial Cell Killing Biophysical Journal. 102: 616a. DOI: 10.1016/J.Bpj.2011.11.3357 |
0.397 |
|
| 2012 |
Huber T, Periole X, Knepp AM, Marrink S, Mukhopadhyay P, Sakmar TP. Dynamic Assembly of the Receptor-G-Protein Signaling Complex Biophysical Journal. 102: 516a. DOI: 10.1016/J.Bpj.2011.11.2823 |
0.365 |
|
| 2012 |
Periole X, Knepp AM, Sakmar TP, Marrink S, Huber T. Probing the Receptor Dimer Interfaces of G-Protein Coupled Receptor in Model Membranes Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.2822 |
0.413 |
|
| 2012 |
Wassenaar TA, Schafer LV, Ingolfsson H, Marrink S. Mixing Martinis: Atomistic Simulations of MscL in a Coarse Grained Environment Biophysical Journal. 102. DOI: 10.1016/J.Bpj.2011.11.1326 |
0.451 |
|
| 2011 |
Bulacu M, Périole X, Marrink SJ. In silico design of robust bolalipid membranes. Biomacromolecules. 13: 196-205. PMID 22103705 DOI: 10.1021/bm201454j |
0.356 |
|
| 2011 |
Velinova M, Sengupta D, Tadjer AV, Marrink SJ. Sphere-to-rod transitions of nonionic surfactant micelles in aqueous solution modeled by molecular dynamics simulations. Langmuir : the Acs Journal of Surfaces and Colloids. 27: 14071-7. PMID 21981373 DOI: 10.1021/La203055T |
0.357 |
|
| 2011 |
Domański J, Marrink SJ, Schäfer LV. Transmembrane helices can induce domain formation in crowded model membranes. Biochimica Et Biophysica Acta. 1818: 984-94. PMID 21884678 DOI: 10.1016/j.bbamem.2011.08.021 |
0.352 |
|
| 2011 |
De Jong DH, Schäfer LV, De Vries AH, Marrink SJ, Berendsen HJ, Grubmüller H. Determining equilibrium constants for dimerization reactions from molecular dynamics simulations. Journal of Computational Chemistry. 32: 1919-28. PMID 21469160 DOI: 10.1002/Jcc.21776 |
0.602 |
|
| 2011 |
Samuli Ollila OH, Louhivuori M, Marrink SJ, Vattulainen I. Protein shape change has a major effect on the gating energy of a mechanosensitive channel. Biophysical Journal. 100: 1651-9. PMID 21463578 DOI: 10.1016/j.bpj.2011.02.027 |
0.382 |
|
| 2011 |
Schäfer LV, de Jong DH, Holt A, Rzepiela AJ, de Vries AH, Poolman B, Killian JA, Marrink SJ. Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes. Proceedings of the National Academy of Sciences of the United States of America. 108: 1343-8. PMID 21205902 DOI: 10.1073/Pnas.1009362108 |
0.38 |
|
| 2011 |
Schäfer LV, Marrink SJ. Partitioning of lipids at domain boundaries in model membranes. Biophysical Journal. 99: L91-3. PMID 21156123 DOI: 10.1016/j.bpj.2010.08.072 |
0.367 |
|
| 2011 |
Fuhrmans M, Marrink SJ. A tool for the morphological analysis of mixtures of lipids and water in computer simulations. Journal of Molecular Modeling. 17: 1755-66. PMID 21061034 DOI: 10.1007/S00894-010-0858-6 |
0.379 |
|
| 2011 |
Periole X, Marrink S, Tieleman P. A Structurally Flexible Protein Backbone for the MARTINI Coarse Grained Force Field Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.3533 |
0.725 |
|
| 2011 |
Wassenaar TA, Louhivuori MJ, Rzepiela AJ, Marrink S. Mixing Martinis: Hybrid Atomistic/Coarse-Grained Models for Protein Molecular Dynamics Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.1891 |
0.415 |
|
| 2010 |
Vuorela T, Catte A, Niemelä PS, Hall A, Hyvönen MT, Marrink SJ, Karttunen M, Vattulainen I. Role of lipids in spheroidal high density lipoproteins. Plos Computational Biology. 6: e1000964. PMID 21060857 DOI: 10.1371/Journal.Pcbi.1000964 |
0.413 |
|
| 2010 |
Sengupta D, Marrink SJ. Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes. Physical Chemistry Chemical Physics : Pccp. 12: 12987-96. PMID 20733990 DOI: 10.1039/c0cp00101e |
0.314 |
|
| 2010 |
Yesylevskyy SO, Schäfer LV, Sengupta D, Marrink SJ. Polarizable water model for the coarse-grained MARTINI force field. Plos Computational Biology. 6: e1000810. PMID 20548957 DOI: 10.1371/journal.pcbi.1000810 |
0.302 |
|
| 2010 |
Smirnova YG, Marrink SJ, Lipowsky R, Knecht V. Solvent-exposed tails as prestalk transition states for membrane fusion at low hydration. Journal of the American Chemical Society. 132: 6710-8. PMID 20411937 DOI: 10.1021/Ja910050X |
0.478 |
|
| 2010 |
Apajalahti T, Niemelä P, Govindan PN, Miettinen MS, Salonen E, Marrink SJ, Vattulainen I. Concerted diffusion of lipids in raft-like membranes. Faraday Discussions. 144: 411-30; discussion 4. PMID 20158041 DOI: 10.1039/B901487J |
0.423 |
|
| 2010 |
Esteban-Martín S, Risselada HJ, Salgado J, Marrink SJ. Stability of asymmetric lipid bilayers assessed by molecular dynamics simulations. Journal of the American Chemical Society. 131: 15194-202. PMID 19795891 DOI: 10.1021/ja904450t |
0.418 |
|
| 2010 |
Periole X, Huber T, Sakmar TP, Marrink S. Amyloid-Like Cross-Beta Structure Polymorphism: An Energetic Point of View Biophysical Journal. 98: 424a. DOI: 10.1016/J.Bpj.2009.12.2294 |
0.357 |
|
| 2010 |
Ollila SOH, Louhivuori M, Marrink S, Vattulainen I. Lateral Pressure Profile and Curvature Frustration in Mechanosensitive Channel Gating Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.121 |
0.428 |
|
| 2010 |
Fuhrmans M, Sanders BP, Marrink S, Vries AHd. Effects of bundling on the properties of the SPC water model Theoretical Chemistry Accounts. 125: 335-344. DOI: 10.1007/S00214-009-0590-4 |
0.363 |
|
| 2009 |
Periole X, Cavalli M, Marrink SJ, Ceruso MA. Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition. Journal of Chemical Theory and Computation. 5: 2531-43. PMID 26616630 DOI: 10.1021/Ct9002114 |
0.416 |
|
| 2009 |
Hinner MJ, Marrink SJ, de Vries AH. Location, tilt, and binding: a molecular dynamics study of voltage-sensitive dyes in biomembranes. The Journal of Physical Chemistry. B. 113: 15807-19. PMID 19894688 DOI: 10.1021/jp907981y |
0.392 |
|
| 2009 |
Sengupta D, Rampioni A, Marrink SJ. Simulations of the c-subunit of ATP-synthase reveal helix rearrangements. Molecular Membrane Biology. 26: 422-34. PMID 19878046 DOI: 10.3109/09687680903321073 |
0.36 |
|
| 2009 |
Kucerka N, Gallová J, Uhríková D, Balgavý P, Bulacu M, Marrink SJ, Katsaras J. Areas of monounsaturated diacylphosphatidylcholines. Biophysical Journal. 97: 1926-32. PMID 19804723 DOI: 10.1016/J.Bpj.2009.06.050 |
0.373 |
|
| 2009 |
Lee H, de Vries AH, Marrink SJ, Pastor RW. A coarse-grained model for polyethylene oxide and polyethylene glycol: conformation and hydrodynamics. The Journal of Physical Chemistry. B. 113: 13186-94. PMID 19754083 DOI: 10.1021/Jp9058966 |
0.362 |
|
| 2009 |
Bennett WF, MacCallum JL, Hinner MJ, Marrink SJ, Tieleman DP. Molecular view of cholesterol flip-flop and chemical potential in different membrane environments. Journal of the American Chemical Society. 131: 12714-20. PMID 19673519 DOI: 10.1021/ja903529f |
0.344 |
|
| 2009 |
Yesylevskyy S, Marrink SJ, Mark AE. Alternative mechanisms for the interaction of the cell-penetrating peptides penetratin and the TAT peptide with lipid bilayers Biophysical Journal. 97: 40-49. PMID 19580742 DOI: 10.1016/J.Bpj.2009.03.059 |
0.41 |
|
| 2009 |
Siwko ME, de Vries AH, Mark AE, Kozubek A, Marrink SJ. Disturb or stabilize? A molecular dynamics study of the effects of resorcinolic lipids on phospholipid bilayers. Biophysical Journal. 96: 3140-53. PMID 19383459 DOI: 10.1016/j.bpj.2009.01.040 |
0.406 |
|
| 2009 |
Risselada HJ, Marrink SJ. Curvature effects on lipid packing and dynamics in liposomes revealed by coarse grained molecular dynamics simulations. Physical Chemistry Chemical Physics : Pccp. 11: 2056-67. PMID 19280016 DOI: 10.1039/b818782g |
0.383 |
|
| 2009 |
Ollila OH, Risselada HJ, Louhivuori M, Lindahl E, Vattulainen I, Marrink SJ. 3D pressure field in lipid membranes and membrane-protein complexes. Physical Review Letters. 102: 078101. PMID 19257715 DOI: 10.1103/Physrevlett.102.078101 |
0.311 |
|
| 2009 |
Marrink SJ, de Vries AH, Tieleman DP. Lipids on the move: simulations of membrane pores, domains, stalks and curves. Biochimica Et Biophysica Acta. 1788: 149-68. PMID 19013128 DOI: 10.1016/j.bbamem.2008.10.006 |
0.372 |
|
| 2009 |
Periole X, Huber T, Marrink S, Sakmar TP. Membrane Proteins-bilayer Interplay: Insights From Coarse-grained Self-assembly And Potential Of Mean Force Simulations Of Rhodopsin In Model Bilayers Biophysical Journal. 96: 673a. DOI: 10.1016/J.Bpj.2008.12.3556 |
0.496 |
|
| 2009 |
Bulacu M, Marrink SJ. Self-assembly and Equilibration of Bolalipid Membranes Studied by Molecular Dynamics Simulations Biophysical Journal. 96: 460a. DOI: 10.1016/J.BPJ.2008.12.2365 |
0.311 |
|
| 2009 |
Louhivuori M, Risselada J, Giessen Evd, Marrink S. MscL Gating In Liposomes Biophysical Journal. 96: 2-4. DOI: 10.1016/J.Bpj.2008.12.1254 |
0.402 |
|
| 2008 |
Monticelli L, Kandasamy SK, Periole X, Larson RG, Tieleman DP, Marrink SJ. The MARTINI Coarse-Grained Force Field: Extension to Proteins. Journal of Chemical Theory and Computation. 4: 819-34. PMID 26621095 DOI: 10.1021/Ct700324X |
0.435 |
|
| 2008 |
Risselada HJ, Marrink SJ. The molecular face of lipid rafts in model membranes. Proceedings of the National Academy of Sciences of the United States of America. 105: 17367-72. PMID 18987307 DOI: 10.1073/pnas.0807527105 |
0.351 |
|
| 2008 |
Baoukina S, Monticelli L, Risselada HJ, Marrink SJ, Tieleman DP. The molecular mechanism of lipid monolayer collapse. Proceedings of the National Academy of Sciences of the United States of America. 105: 10803-8. PMID 18669655 DOI: 10.1073/pnas.0711563105 |
0.328 |
|
| 2008 |
Sengupta D, Leontiadou H, Mark AE, Marrink SJ. Toroidal pores formed by antimicrobial peptides show significant disorder Biochimica Et Biophysica Acta - Biomembranes. 1778: 2308-2317. PMID 18602889 DOI: 10.1016/J.Bbamem.2008.06.007 |
0.397 |
|
| 2008 |
Risselada HJ, Mark AE, Marrink SJ. Application of mean field boundary potentials in simulations of lipid vesicles Journal of Physical Chemistry B. 112: 7438-7447. PMID 18512884 DOI: 10.1021/jp0758519 |
0.347 |
|
| 2008 |
Yefimov S, van der Giessen E, Onck PR, Marrink SJ. Mechanosensitive membrane channels in action. Biophysical Journal. 94: 2994-3002. PMID 18192351 DOI: 10.1529/biophysj.107.119966 |
0.352 |
|
| 2007 |
Periole X, Huber T, Marrink SJ, Sakmar TP. G protein-coupled receptors self-assemble in dynamics simulations of model bilayers Journal of the American Chemical Society. 129: 10126-10132. PMID 17658882 DOI: 10.1021/Ja0706246 |
0.482 |
|
| 2007 |
Marrink SJ, Risselada HJ, Yefimov S, Tieleman DP, de Vries AH. The MARTINI force field: coarse grained model for biomolecular simulations. The Journal of Physical Chemistry. B. 111: 7812-24. PMID 17569554 DOI: 10.1021/jp071097f |
0.318 |
|
| 2007 |
Leontiadou H, Mark AE, Marrink SJ. Ion transport across transmembrane pores Biophysical Journal. 92: 4209-4215. PMID 17384063 DOI: 10.1529/Biophysj.106.101295 |
0.379 |
|
| 2007 |
Knecht V, Marrink SJ. Molecular dynamics simulations of lipid vesicle fusion in atomic detail. Biophysical Journal. 92: 4254-61. PMID 17384060 DOI: 10.1529/Biophysj.106.103572 |
0.482 |
|
| 2007 |
Baron R, Trzesniak D, de Vries AH, Elsener A, Marrink SJ, van Gunsteren WF. Comparison of thermodynamic properties of coarse-grained and atomic-level simulation models. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 8: 452-61. PMID 17290360 DOI: 10.1002/cphc.200600658 |
0.513 |
|
| 2007 |
Siwko ME, Marrink SJ, de Vries AH, Kozubek A, Schoot Uiterkamp AJM, Mark AE. Does isoprene protect plant membranes from thermal shock? A molecular dynamics study Biochimica Et Biophysica Acta - Biomembranes. 1768: 198-206. PMID 17125733 DOI: 10.1016/j.bbamem.2006.09.023 |
0.336 |
|
| 2006 |
Tieleman DP, Marrink SJ. Lipids out of equilibrium: energetics of desorption and pore mediated flip-flop. Journal of the American Chemical Society. 128: 12462-7. PMID 16984196 DOI: 10.1021/Ja0624321 |
0.449 |
|
| 2006 |
Knecht V, Mark AE, Marrink SJ. Phase behavior of a phospholipid/fatty acid/water mixture studied in atomic detail Journal of the American Chemical Society. 128: 2030-2034. PMID 16464104 DOI: 10.1021/Ja056619O |
0.355 |
|
| 2005 |
Knecht V, Müller M, Bonn M, Marrink SJ, Mark AE. Simulation studies of pore and domain formation in a phospholipid monolayer. The Journal of Chemical Physics. 122: 024704. PMID 15638611 DOI: 10.1063/1.1825992 |
0.38 |
|
| 2004 |
Marrink SJ, Mark AE. Molecular view of hexagonal phase formation in phospholipid membranes Biophysical Journal. 87: 3894-3900. PMID 15377528 DOI: 10.1529/Biophysj.104.048710 |
0.422 |
|
| 2004 |
De Vries AH, Mark AE, Marrink SJ. Molecular Dynamics Simulation of the Spontaneous Formation of a Small DPPC Vesicle in Water in Atomistic Detail Journal of the American Chemical Society. 126: 4488-4489. PMID 15070345 DOI: 10.1021/ja0398417 |
0.327 |
|
| 2004 |
Leontiadou H, Mark AE, Marrink SJ. Molecular Dynamics Simulations of Hydrophilic Pores in Lipid Bilayers Biophysical Journal. 86: 2156-2164. PMID 15041656 DOI: 10.1016/S0006-3495(04)74275-7 |
0.396 |
|
| 2003 |
Marrink SJ, Mark AE. The mechanism of vesicle fusion as revealed by molecular dynamics simulations Journal of the American Chemical Society. 125: 11144-11145. PMID 16220905 DOI: 10.1021/ja036138+ |
0.404 |
|
| 2003 |
Marrink SJ, Mark AE. Molecular Dynamics Simulation of the Formation, Structure, and Dynamics of Small Phospholipid Vesicles Journal of the American Chemical Society. 125: 15233-15242. PMID 14653758 DOI: 10.1021/ja0352092 |
0.37 |
|
| 2003 |
Colombo G, Marrink SJ, Mark AE. Simulation of MscL gating in a bilayer under stress Biophysical Journal. 84: 2331-2337. PMID 12668441 |
0.359 |
|
| 2003 |
Anézo C, de Vries AH, Höltje H, Tieleman DP, Marrink S. Methodological Issues in Lipid Bilayer Simulations The Journal of Physical Chemistry B. 107: 9424-9433. DOI: 10.1021/JP0348981 |
0.301 |
|
| 2002 |
Marrink SJ, Tieleman DP. Molecular dynamics simulation of spontaneous membrane fusion during a cubic-hexagonal phase transition. Biophysical Journal. 83: 2386-92. PMID 12414675 DOI: 10.1016/S0006-3495(02)75252-1 |
0.4 |
|
| 2002 |
Marrink SJ, Mark AE. Molecular dynamics simulations of mixed micelles modeling human bile Biochemistry. 41: 5375-5382. PMID 11969397 DOI: 10.1021/bi015613i |
0.36 |
|
| 2002 |
Marrink SJ, Tieleman DP. Molecular dynamics simulation of a lipid diamond cubic phase. Journal of the American Chemical Society. 123: 12383-91. PMID 11734042 DOI: 10.1021/JA016012H |
0.339 |
|
| 2001 |
Marrink SJ, Lindahl E, Edholm O, Mark AE. Simulation of the spontaneous aggregation of phospholipids into bilayers [23] Journal of the American Chemical Society. 123: 8638-8639. PMID 11525689 DOI: 10.1021/Ja0159618 |
0.409 |
|
| 2001 |
Marrink S, Marčelja S. Potential of Mean Force Computations of Ions Approaching a Surface Langmuir. 17: 7929-7934. DOI: 10.1021/La015526R |
0.308 |
|
| 1998 |
Marrink SJ, Berger O, Tieleman P, Jähnig F. Adhesion forces of lipids in a phospholipid membrane studied by molecular dynamics simulations. Biophysical Journal. 74: 931-43. PMID 9533704 DOI: 10.1016/S0006-3495(98)74016-0 |
0.379 |
|
| 1997 |
Tieleman DP, Marrink SJ, Berendsen HJ. A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems. Biochimica Et Biophysica Acta. 1331: 235-70. PMID 9512654 DOI: 10.1016/S0304-4157(97)00008-7 |
0.635 |
|
| 1996 |
Marrink SJ, Jähnig F, Berendsen HJ. Proton transport across transient single-file water pores in a lipid membrane studied by molecular dynamics simulations. Biophysical Journal. 71: 632-47. PMID 8842203 DOI: 10.1016/S0006-3495(96)79264-0 |
0.647 |
|
| 1996 |
López Cascales JJ, De La Torre JG, Marrink SJ, Berendsen HJC. Molecular dynamics simulation of a charged biological membrane Journal of Chemical Physics. 104: 2713-2720. DOI: 10.1063/1.470992 |
0.363 |
|
| 1996 |
Marrink SJ, Tieleman DP, Van Buuren AR, Berendsen HJC. Membranes and water: An interesting relationship Faraday Discussions. 103: 191-201. DOI: 10.1039/Fd9960300191 |
0.409 |
|
| 1996 |
Marrink SJ, Berendsen HJC. Permeation Process of Small Molecules across Lipid Membranes Studied by Molecular Dynamics Simulations The Journal of Physical Chemistry. 100: 16729-16738. DOI: 10.1021/Jp952956F |
0.379 |
|
| 1995 |
Buuren ARv, Marrink S, Berendsen HJC. Characterisation of aqueous interfaces with different hydrophobicities by molecular dynamics Colloids and Surfaces a: Physicochemical and Engineering Aspects. 102: 143-157. DOI: 10.1016/0927-7757(95)03227-5 |
0.385 |
|
| 1994 |
Egberts E, Marrink SJ, Berendsen HJ. Molecular dynamics simulation of a phospholipid membrane. European Biophysics Journal : Ebj. 22: 423-36. PMID 8149924 DOI: 10.1007/Bf00180163 |
0.689 |
|
| 1994 |
Marrink S, Berendsen HJC. Simulation of Water Transport through a Lipid Membrane The Journal of Physical Chemistry. 98: 4155-4168. DOI: 10.1021/J100066A040 |
0.456 |
|
| 1993 |
Berendsen HJC, Marrink S. Molecular dynamics of water transport through membranes: Water from solvent to solute Pure and Applied Chemistry. 65: 2513-2520. DOI: 10.1351/Pac199365122513 |
0.453 |
|
| 1993 |
Marrink SJ, Berkowitz M, Berendsen HJC. Molecular dynamics simulation of a membrane/water interface: the ordering of water and its relation to the hydration force Langmuir. 9: 3122-3131. DOI: 10.1021/La00035A062 |
0.338 |
|
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