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Annick Dejaegere - Publications

Affiliations: 
University of Strasbourg, Strasbourg, Grand Est, France 
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Vigneron M, Dietsch F, Bianchetti L, Dejaegere A, Nominé Y, Cordonnier A, Zuber G, Chatton B, Donzeau M. Self-Associating Peptides for Modular Bifunctional Conjugation of Tetramer Macromolecules in Living Cells. Bioconjugate Chemistry. 30: 1734-1744. PMID 31091078 DOI: 10.1021/Acs.Bioconjchem.9B00276  0.31
2019 André C, Martiel I, Wolff P, Landolfo M, Lorber B, Silva da Veiga C, Dejaegere A, Dumas P, Guichard G, Olieric V, Wagner JG, Burnouf DY. Peptide Interactions on Bacterial Sliding Clamps. Acs Infectious Diseases. PMID 30912430 DOI: 10.1021/acsinfecdis.9b00089  0.324
2019 Eberhardt J, McEwen AG, Bourguet W, Moras D, Dejaegere A. A revisited version of the apo structure of the ligand-binding domain of the human nuclear receptor retinoic X receptor α. Acta Crystallographica. Section F, Structural Biology Communications. 75: 98-104. PMID 30713160 DOI: 10.2210/Pdb6Hn6/Pdb  0.354
2018 Eberhardt J, Stote RH, Dejaegere A. Unrolr: Structural analysis of protein conformations using stochastic proximity embedding. Journal of Computational Chemistry. 39: 2551-2557. PMID 30447084 DOI: 10.1002/Jcc.25599  0.321
2018 Bianchetti L, Wassmer B, Defosset A, Smertina A, Tiberti ML, Stote RH, Dejaegere A. Alternative dimerization interfaces in the glucocorticoid receptor-α ligand binding domain. Biochimica Et Biophysica Acta. General Subjects. 1862: 1810-1825. PMID 29723544 DOI: 10.1016/J.Bbagen.2018.04.022  0.325
2017 Sharov G, Voltz K, Durand A, Kolesnikova O, Papai G, Myasnikov AG, Dejaegere A, Shem AB, Schultz P. Structure of the transcription activator target Tra1 within the chromatin modifying complex SAGA. Nature Communications. 8: 1556. PMID 29146944 DOI: 10.1038/S41467-017-01564-7  0.319
2017 Chebaro Y, Sirigu S, Amal I, Lutzing R, Stote RH, Rochette-Egly C, Rochel N, Dejaegere A. Allosteric Regulation in the Ligand Binding Domain of Retinoic Acid Receptorγ. Plos One. 12: e0171043. PMID 28125680 DOI: 10.1371/Journal.Pone.0171043  0.375
2016 Gaillard T, Stote RH, Dejaegere A. PSSweb: protein structural statistics web server. Nucleic Acids Research. 44: W401-5. PMID 27174930 DOI: 10.1093/Nar/Gkw332  0.301
2016 Voltz K, Léonard J, Touceda PT, Conyard J, Chaker Z, Dejaegere A, Godet J, Mély Y, Haacke S, Stote RH. Quantitative sampling of conformational heterogeneity of a DNA hairpin using molecular dynamics simulations and ultrafast fluorescence spectroscopy. Nucleic Acids Research. 44: 3408-19. PMID 26896800 DOI: 10.1093/Nar/Gkw077  0.309
2014 Wolff P, Amal I, Oliéric V, Chaloin O, Gygli G, Ennifar E, Lorber B, Guichard G, Wagner J, Dejaegere A, Burnouf DY. Differential modes of peptide binding onto replicative sliding clamps from various bacterial origins. Journal of Medicinal Chemistry. 57: 7565-76. PMID 25170813 DOI: 10.1021/Jm500467A  0.303
2014 Belorusova AY, Eberhardt J, Potier N, Stote RH, Dejaegere A, Rochel N. Structural insights into the molecular mechanism of vitamin D receptor activation by lithocholic acid involving a new mode of ligand recognition. Journal of Medicinal Chemistry. 57: 4710-9. PMID 24818857 DOI: 10.1021/Jm5002524  0.378
2013 Gaillard T, Schwarz BB, Chebaro Y, Stote RH, Dejaegere A. Protein structural statistics with PSS. Journal of Chemical Information and Modeling. 53: 2471-82. PMID 23957210 DOI: 10.1021/Ci400233J  0.305
2013 Takacs M, Petoukhov MV, Atkinson RA, Roblin P, Ogi FX, Demeler B, Potier N, Chebaro Y, Dejaegere A, Svergun DI, Moras D, Billas IM. The asymmetric binding of PGC-1α to the ERRα and ERRγ nuclear receptor homodimers involves a similar recognition mechanism. Plos One. 8: e67810. PMID 23874451 DOI: 10.1371/Journal.Pone.0067810  0.353
2013 Chebaro Y, Amal I, Rochel N, Rochette-Egly C, Stote RH, Dejaegere A. Phosphorylation of the retinoic acid receptor alpha induces a mechanical allosteric regulation and changes in internal dynamics. Plos Computational Biology. 9: e1003012. PMID 23637584 DOI: 10.1371/Journal.Pcbi.1003012  0.371
2013 San Sebastián E, Zimmerman T, Zubia A, Vara Y, Martin E, Sirockin F, Dejaegere A, Stote RH, Lopez X, Pantoja-Uceda D, Valcárcel M, Mendoza L, Vidal-Vanaclocha F, Cossío FP, Blanco FJ. Design, synthesis, and functional evaluation of leukocyte function associated antigen-1 antagonists in early and late stages of cancer development. Journal of Medicinal Chemistry. 56: 735-47. PMID 23339734 DOI: 10.1021/Jm3016848  0.34
2012 Ciesielski F, Sato Y, Chebaro Y, Moras D, Dejaegere A, Rochel N. Structural basis for the accommodation of bis- and tris-aromatic derivatives in vitamin D nuclear receptor. Journal of Medicinal Chemistry. 55: 8440-9. PMID 22957834 DOI: 10.1021/Jm300858S  0.352
2011 Wolff P, Oliéric V, Briand JP, Chaloin O, Dejaegere A, Dumas P, Ennifar E, Guichard G, Wagner J, Burnouf DY. Structure-based design of short peptide ligands binding onto the E. coli processivity ring. Journal of Medicinal Chemistry. 54: 4627-37. PMID 21619076 DOI: 10.1021/Jm200311M  0.349
2011 Samarut E, Amal I, Markov GV, Stote R, Dejaegere A, Laudet V, Rochette-Egly C. Evolution of nuclear retinoic acid receptor alpha (RARα) phosphorylation sites. Serine gain provides fine-tuned regulation. Molecular Biology and Evolution. 28: 2125-37. PMID 21297158 DOI: 10.1093/Molbev/Msr035  0.317
2011 Sebastin ES, Zimmerman T, Zubia A, Vara Y, Martin E, Dejaegere A, Stote RH, Lopez X, Pantoja-Uceda D, Valcarcel M, Mendoza L, Vidal-Vanaclocha F, Cossio FP, Blanco FJ. Abstract C46: Design, synthesis, and functional evaluation of leukocyte-function associated antigen-1 (LFA-1) antagonists in early and late stages of cancer development. Molecular Cancer Therapeutics. 10. DOI: 10.1158/1535-7163.Targ-11-C46  0.341
2010 Sato Y, Ramalanjaona N, Huet T, Potier N, Osz J, Antony P, Peluso-Iltis C, Poussin-Courmontagne P, Ennifar E, Mély Y, Dejaegere A, Moras D, Rochel N. The "Phantom Effect" of the Rexinoid LG100754: structural and functional insights. Plos One. 5: e15119. PMID 21152046 DOI: 10.1371/Journal.Pone.0015119  0.387
2010 Fidelak J, Ferrer S, Oberlin M, Moras D, Dejaegere A, Stote RH. Dynamic correlation networks in human peroxisome proliferator-activated receptor-γ nuclear receptor protein. European Biophysics Journal : Ebj. 39: 1503-12. PMID 20496064 DOI: 10.1007/S00249-010-0608-9  0.366
2009 Hajjar E, Dejaegere A, Reuter N. Challenges in pKa predictions for proteins: the case of Asp213 in human proteinase 3. The Journal of Physical Chemistry. A. 113: 11783-92. PMID 19780520 DOI: 10.1021/Jp902930U  0.603
2009 Gaillard T, Dejaegere A, Stote RH. Dynamics of beta3 integrin I-like and hybrid domains: insight from simulations on the mechanism of transition between open and closed forms. Proteins. 76: 977-94. PMID 19350618 DOI: 10.1002/Prot.22404  0.343
2009 Moroy G, Martin E, Dejaegere A, Stote RH. Molecular basis for Bcl-2 homology 3 domain recognition in the Bcl-2 protein family: identification of conserved hot spot interactions. The Journal of Biological Chemistry. 284: 17499-511. PMID 19293158 DOI: 10.1074/Jbc.M805542200  0.315
2007 Gaillard T, Martin E, San Sebastian E, Cossío FP, Lopez X, Dejaegere A, Stote RH. Comparative normal mode analysis of LFA-1 integrin I-domains. Journal of Molecular Biology. 374: 231-49. PMID 17919656 DOI: 10.1016/J.Jmb.2007.07.006  0.361
2007 Sebastian ES, Matxain JM, Eriksson LA, Stote RH, Dejaegere A, Cossio FP, Lopez X. Metal ion dependent adhesion sites in integrins: a combined DFT and QMC study on Mn2+. The Journal of Physical Chemistry. B. 111: 9099-103. PMID 17608410 DOI: 10.1021/Jp071065S  0.36
2007 Lafont V, Schaefer M, Stote RH, Altschuh D, Dejaegere A. Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids". Proteins. 67: 418-34. PMID 17256770 DOI: 10.1002/Prot.21259  0.351
2006 Lopez X, Dejaegere A, Leclerc F, York DM, Karplus M. Nucleophilic attack on phosphate diesters: a density functional study of in-line reactivity in dianionic, monoanionic, and neutral systems. The Journal of Physical Chemistry. B. 110: 11525-39. PMID 16771429 DOI: 10.1021/Jp0603942  0.46
2006 San Sebastian E, Mercero JM, Stote RH, Dejaegere A, Cossío FP, Lopez X. On the affinity regulation of the metal-ion-dependent adhesion sites in integrins. Journal of the American Chemical Society. 128: 3554-63. PMID 16536528 DOI: 10.1021/Ja054142A  0.352
2006 Zeeh JC, Zeghouf M, Grauffel C, Guibert B, Martin E, Dejaegere A, Cherfils J. Dual specificity of the interfacial inhibitor brefeldin A for arf proteins and Sec7 domains Journal of Biological Chemistry. 281: 11805-11814. PMID 16484231 DOI: 10.1074/Jbc.M600149200  0.342
2005 Dejaegere A, Choulier L, Lafont V, De Genst E, Altschuh D. Variations in antigen-antibody association kinetics as a function of pH and salt concentration: a QSAR and molecular modeling study. Biochemistry. 44: 14409-18. PMID 16262241 DOI: 10.1021/Bi050986V  0.366
2002 Sirockin F, Sich C, Improta S, Schaefer M, Saudek V, Froloff N, Karplus M, Dejaegere A. Structure activity relationship by NMR and by computer: a comparative study. Journal of the American Chemical Society. 124: 11073-84. PMID 12224955 DOI: 10.1021/Ja0265658  0.48
2002 Lopez X, Schaefer M, Dejaegere A, Karplus M. Theoretical evaluation of pK(a) in phosphoranes: implications for phosphate ester hydrolysis. Journal of the American Chemical Society. 124: 5010-8. PMID 11982365 DOI: 10.1021/Ja011373I  0.465
2001 Lopez X, York DM, Dejaegere A, Karplus M. Theoretical studies on the hydrolysis of phosphate diesters in the gas phase, solution, and RNase A International Journal of Quantum Chemistry. 86: 10-26. DOI: 10.1002/Qua.1601  0.474
2000 Atkinson RA, Kieffer B, Dejaegere A, Sirockin F, Lefèvre JF. Structural and dynamic characterization of omega-conotoxin MVIIA: the binding loop exhibits slow conformational exchange. Biochemistry. 39: 3908-19. PMID 10747778 DOI: 10.1021/Bi992651H  0.362
2000 Reuter N, Dejaegere A, Maigret B, Karplus M. Frontier Bonds in QM/MM Methods: A Comparison of Different Approaches The Journal of Physical Chemistry A. 104: 1720-1735. DOI: 10.1021/Jp9924124  0.598
1999 Lopez X, Dejaegere A, Karplus M. Mechanism of Alkaline Hydrolysis of Cyclic and Acyclic Sulfates:  An ab Initio Study with Solvation Correction Journal of the American Chemical Society. 121: 5548-5558. DOI: 10.1021/Ja984193Q  0.465
1996 Mer G, Dejaegere A, Stote R, Kieffer B, Lefèvre J. Structural Dynamics of PMP-D2:  An Experimental and Theoretical Study†,⊥ The Journal of Physical Chemistry. 100: 2667-2674. DOI: 10.1021/Jp9528368  0.334
1994 Dejaegere A, Liang X, Karplus M. Phosphate ester hydrolysis: calculation of gas-phase reaction paths and solvation effects Journal of the Chemical Society, Faraday Transactions. 90: 1763. DOI: 10.1039/Ft9949001763  0.464
1993 Dejaegere A, Karplus M. Hydrolysis rate difference between cyclic and acyclic phosphate esters: solvation versus strain Journal of the American Chemical Society. 115: 5316-5317. DOI: 10.1021/Ja00065A062  0.391
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