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Lucia Carbone, Ph.D. - Publications

Affiliations: 
Behavioral Neuroscience Oregon Health and Science University, Portland, OR 
Area:
Chromosome evolution, particularly centromere repositioning and chromosomal rearrangements
Website:
http://www.ohsu.edu/xd/education/schools/school-of-medicine/academic-programs/graduate-studies/faculty/grad-studies-faculty.cfm?facultyid=742
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Mao Y, Harvey WT, Porubsky D, Munson KM, Hoekzema K, Lewis AP, Audano PA, Rozanski A, Yang X, Zhang S, Gordon DS, Wei X, Logsdon GA, Haukness M, Dishuck PC, ... ... Carbone L, et al. Structurally divergent and recurrently mutated regions of primate genomes. Biorxiv : the Preprint Server For Biology. PMID 36945442 DOI: 10.1101/2023.03.07.531415  0.305
2022 Brooks KE, Daughtry BL, Davis B, Yan MY, Fei SS, Shepherd S, Carbone L, Chavez SL. Molecular contribution to embryonic aneuploidy and karyotypic complexity in initial cleavage divisions of mammalian development. Development (Cambridge, England). PMID 35311995 DOI: 10.1242/dev.198341  0.735
2021 Rosenkrantz JL, Gaffney JE, Roberts VHJ, Carbone L, Chavez SL. Transcriptomic analysis of primate placentas and novel rhesus trophoblast cell lines informs investigations of human placentation. Bmc Biology. 19: 127. PMID 34154587 DOI: 10.1186/s12915-021-01056-7  0.747
2021 Rosenkrantz JL, Gaffney JE, Roberts VHJ, Carbone L, Chavez SL. Transcriptomic analysis of primate placentas and novel rhesus trophoblast cell lines informs investigations of human placentation. Bmc Biology. 19: 127. PMID 34154587 DOI: 10.1186/s12915-021-01056-7  0.747
2021 Hartley GA, Okhovat M, O'Neill RJ, Carbone L. Comparative analyses of gibbon centromeres reveal dynamic genus specific shifts in repeat composition. Molecular Biology and Evolution. PMID 33983366 DOI: 10.1093/molbev/msab148  0.319
2020 Okhovat M, Nevonen KA, Davis BA, Michener P, Ward S, Milhaven M, Harshman L, Sohota A, Fernandes JD, Salama SR, O'Neill RJ, Ahituv N, Veeramah KR, Carbone L. Co-option of the lineage-specific retrotransposon in the gibbon genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 32690705 DOI: 10.1073/Pnas.2006038117  0.397
2019 Hardin A, Nevonen KA, Eckalbar WL, Carbone L, Ahituv N. Comparative genomic characterization of the multimammate mouse Mastomys coucha. Molecular Biology and Evolution. PMID 31424545 DOI: 10.1093/Molbev/Msz188  0.408
2019 Daughtry BL, Rosenkrantz JL, Lazar NH, Fei SS, Redmayne N, Torkenczy KA, Adey A, Yan M, Gao L, Park B, Nevonen KA, Carbone L, Chavez SL. Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion. Genome Research. PMID 30683754 DOI: 10.1101/Gr.239830.118  0.756
2019 Brooks KE, Daughtry BL, Fei SS, Yan MY, Davis B, Carbone L, Chavez SL. 41 Delineating the molecular connections between mitotic aneuploidy, micronucleation, and cellular fragmentation in pre-implantation bovine embryos Reproduction, Fertility and Development. 31: 146. DOI: 10.1071/Rdv31N1Ab41  0.769
2018 Lazar NH, Nevonen KA, O'Connell B, McCann C, O'Neill RJ, Green RE, Meyer TJ, Okhovat M, Carbone L. Epigenetic maintenance of topological domains in the highly rearranged gibbon genome. Genome Research. PMID 29914971 DOI: 10.1101/Gr.233874.117  0.389
2017 Meyer TJ, Rosenkrantz JL, Carbone L, Chavez SL. Endogenous Retroviruses: With Us and against Us. Frontiers in Chemistry. 5: 23. PMID 28439515 DOI: 10.3389/Fchem.2017.00023  0.726
2017 Vitak SA, Torkenczy KA, Rosenkrantz JL, Fields AJ, Christiansen L, Wong MH, Carbone L, Steemers FJ, Adey A. Sequencing thousands of single-cell genomes with combinatorial indexing. Nature Methods. PMID 28135258 DOI: 10.1038/Nmeth.4154  0.757
2017 Albrecht C, Baker JC, Blundell C, Chavez SL, Carbone L, Chamley L, Hannibal RL, Illsley N, Kurre P, Laurent LC, McKenzie C, Morales-Prieto D, Pantham P, Paquette A, Powell K, et al. IFPA meeting 2016 workshop report I: Genomic communication, bioinformatics, trophoblast biology and transport systems. Placenta. PMID 28108031 DOI: 10.1016/J.Placenta.2017.01.103  0.663
2017 Rosenkrantz JL, Carbone L. Investigating somatic aneuploidy in the brain: why we need a new model. Chromosoma. 126: 337-350. PMID 27638401 DOI: 10.1007/S00412-016-0615-4  0.752
2017 Daughtry BL, Rosenkrantz JL, Lazar N, Redmayne N, Nevonen KA, Carbone L, Chavez SL. 6 ANEUPLOIDY TOLERANCE IN RHESUS MACAQUE PRE-IMPLANTATION EMBRYOS VIA MICRONUCLEI FORMATION, CELLULAR FRAGMENTATION, AND BLASTOMERE EXCLUSION Reproduction, Fertility and Development. 29: 110. DOI: 10.1071/Rdv29N1Ab6  0.758
2016 Meyer TJ, Held U, Nevonen KA, Klawitter S, Pirzer T, Carbone L, Schumann GG. The flow of the gibbon LAVA element is facilitated by the LINE-1 retrotransposition machinery. Genome Biology and Evolution. PMID 27635049 DOI: 10.1093/Gbe/Evw224  0.369
2016 Bimber BN, Raboin MJ, Letaw J, Nevonen KA, Spindel JE, McCouch SR, Cervera-Juanes R, Spindel E, Carbone L, Ferguson B, Vinson A. Whole-genome characterization in pedigreed non-human primates using genotyping-by-sequencing (GBS) and imputation. Bmc Genomics. 17: 676. PMID 27558348 DOI: 10.1186/S12864-016-2966-X  0.366
2016 Wall JD, Schlebusch SA, Alberts SC, Cox LA, Snyder-Mackler N, Nevonen K, Carbone L, Tung J. Genome-wide ancestry and divergence patterns from low-coverage sequencing data reveal a complex history of admixture in wild baboons. Molecular Ecology. PMID 27145036 DOI: 10.1111/Mec.13684  0.389
2016 Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, et al. Transcriptomic and epigenomic characterization of the developing bat wing. Nature Genetics. PMID 27019111 DOI: 10.1038/Ng.3537  0.36
2016 Daughtry BL, Masterson KR, Metcalf ES, Battaglia D, Fei SS, Carbone L, Beck R, Cook N, Chavez SL. Combining Time-Lapse Imaging and Next Generation RNA-Sequencing to assess Equine Embryo Developmental Potential Journal of Equine Veterinary Science. 41: 80-81. DOI: 10.1016/J.Jevs.2016.04.081  0.673
2015 Carbone L, Chavez SL. Mammalian pre-implantation chromosomal instability: species comparison, evolutionary considerations, and pathological correlations. Systems Biology in Reproductive Medicine. 61: 321-35. PMID 26366555 DOI: 10.3109/19396368.2015.1073406  0.752
2015 Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF. Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach. Genetics. 200: 295-308. PMID 25769979 DOI: 10.1534/Genetics.115.174425  0.406
2015 Macchia G, Nord KH, Zoli M, Purgato S, D'Addabbo P, Whelan CW, Carbone L, Perini G, Mertens F, Rocchi M, Storlazzi CT. Ring chromosomes, breakpoint clusters, and neocentromeres in sarcomas. Genes, Chromosomes & Cancer. 54: 156-67. PMID 25421174 DOI: 10.1002/Gcc.22228  0.423
2014 Lovell PV, Wirthlin M, Wilhelm L, Minx P, Lazar NH, Carbone L, Warren WC, Mello CV. Conserved syntenic clusters of protein coding genes are missing in birds. Genome Biology. 15: 565. PMID 25518852 DOI: 10.1186/S13059-014-0565-1  0.39
2014 Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/Nature13679  0.425
2014 Wacholder AC, Cox C, Meyer TJ, Ruggiero RP, Vemulapalli V, Damert A, Carbone L, Pollock DD. Inference of transposable element ancestry. Plos Genetics. 10: e1004482. PMID 25121584 DOI: 10.1371/Journal.Pgen.1004482  0.369
2014 L'Abbate A, Macchia G, D'Addabbo P, Lonoce A, Tolomeo D, Trombetta D, Kok K, Bartenhagen C, Whelan CW, Palumbo O, Severgnini M, Cifola I, Dugas M, Carella M, De Bellis G, ... ... Carbone L, et al. Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer. Nucleic Acids Research. 42: 9131-45. PMID 25034695 DOI: 10.1093/Nar/Gku590  0.449
2013 Wall JD, Kim SK, Luca F, Carbone L, Mootnick AR, de Jong PJ, Di Rienzo A. Incomplete lineage sorting is common in extant gibbon genera. Plos One. 8: e53682. PMID 23341974 DOI: 10.1371/Journal.Pone.0053682  0.326
2012 Capozzi O, Carbone L, Stanyon RR, Marra A, Yang F, Whelan CW, de Jong PJ, Rocchi M, Archidiacono N. A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons. Genome Research. 22: 2520-8. PMID 22892276 DOI: 10.1101/gr.138651.112  0.36
2012 Meyer TJ, McLain AT, Oldenburg JM, Faulk C, Bourgeois MG, Conlin EM, Mootnick AR, de Jong PJ, Roos C, Carbone L, Batzer MA. An Alu-based phylogeny of gibbons (hylobatidae). Molecular Biology and Evolution. 29: 3441-50. PMID 22683814 DOI: 10.1093/Molbev/Mss149  0.328
2012 Carbone L, Harris RA, Mootnick AR, Milosavljevic A, Martin DI, Rocchi M, Capozzi O, Archidiacono N, Konkel MK, Walker JA, Batzer MA, de Jong PJ. Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biology and Evolution. 4: 648-58. PMID 22593550 DOI: 10.1093/Gbe/Evs048  0.397
2011 Hampton OA, Koriabine M, Miller CA, Coarfa C, Li J, Den Hollander P, Schoenherr C, Carbone L, Nefedov M, Ten Hallers BF, Lee AV, De Jong PJ, Milosavljevic A. Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines. Cancer Genetics. 204: 447-57. PMID 21962895 DOI: 10.1016/J.Cancergen.2011.07.009  0.414
2011 Nefedov M, Carbone L, Field M, Schein J, de Jong PJ. Isolation of specific clones from nonarrayed BAC libraries through homologous recombination. Journal of Biomedicine & Biotechnology. 2011: 560124. PMID 20981149 DOI: 10.1155/2011/560124  0.327
2010 Capra JA, Carbone L, Riesenfeld SJ, Wall JD. Genomics through the lens of next-generation sequencing. Genome Biology. 11: 306. PMID 20587080 DOI: 10.1186/Gb-2010-11-6-306  0.354
2009 Carbone L, Harris RA, Vessere GM, Mootnick AR, Humphray S, Rogers J, Kim SK, Wall JD, Martin D, Jurka J, Milosavljevic A, de Jong PJ. Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution. Plos Genetics. 5: e1000538. PMID 19557196 DOI: 10.1371/Journal.Pgen.1000538  0.452
2009 Carbone L, Mootnick AR, Nadler T, Moisson P, Ryder O, Roos C, de Jong PJ. A chromosomal inversion unique to the northern white-cheeked gibbon. Plos One. 4: e4999. PMID 19319194 DOI: 10.1371/journal.pone.0004999  0.308
2009 Carbone L, D'addabbo P, Cardone MF, Teti MG, Misceo D, Vessere GM, de Jong PJ, Rocchi M. A satellite-like sequence, representing a "clone gap" in the human genome, was likely involved in the seeding of a novel centromere in macaque. Chromosoma. 118: 269-77. PMID 19048265 DOI: 10.1007/S00412-008-0196-Y  0.461
2006 Carbone L, Vessere GM, ten Hallers BF, Zhu B, Osoegawa K, Mootnick A, Kofler A, Wienberg J, Rogers J, Humphray S, Scott C, Harris RA, Milosavljevic A, de Jong PJ. A high-resolution map of synteny disruptions in gibbon and human genomes. Plos Genetics. 2: e223. PMID 17196042 DOI: 10.1371/journal.pgen.0020223  0.368
2006 Cardone MF, Alonso A, Pazienza M, Ventura M, Montemurro G, Carbone L, de Jong PJ, Stanyon R, D'Addabbo P, Archidiacono N, She X, Eichler EE, Warburton PE, Rocchi M. Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs. Genome Biology. 7: R91. PMID 17040560 DOI: 10.1186/Gb-2006-7-10-R91  0.318
2005 Misceo D, Cardone MF, Carbone L, D'Addabbo P, de Jong PJ, Rocchi M, Archidiacono N. Evolutionary history of chromosome 20. Molecular Biology and Evolution. 22: 360-6. PMID 15496555 DOI: 10.1093/Molbev/Msi021  0.468
2004 Ventura M, Weigl S, Carbone L, Cardone MF, Misceo D, Teti M, D'Addabbo P, Wandall A, Björck E, de Jong PJ, She X, Eichler EE, Archidiacono N, Rocchi M. Recurrent sites for new centromere seeding. Genome Research. 14: 1696-703. PMID 15342555 DOI: 10.1101/Gr.2608804  0.427
2003 Locke DP, Segraves R, Carbone L, Archidiacono N, Albertson DG, Pinkel D, Eichler EE. Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Research. 13: 347-57. PMID 12618365 DOI: 10.1101/Gr.1003303  0.336
2002 Carbone L, Ventura M, Tempesta S, Rocchi M, Archidiacono N. Evolutionary history of chromosome 10 in primates Chromosoma. 111: 267-272. PMID 12424526 DOI: 10.1007/S00412-002-0205-5  0.373
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