Carolyn M. Southward, Ph.D. - Related publications

2004 University of Calgary, Calgary, Alberta, Canada 
Microbiology, Molecular Biology
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Callaghan MM, Klimowicz AK, Shockey AC, Kane J, Pepperell CS, Dillard JP. Transcriptional and translational responsiveness of the type IV secretion system to conditions of host infections. Infection and Immunity. IAI0051921. PMID 34581604 DOI: 10.1128/IAI.00519-21   
2021 Sanson MA, Vega LA, Shah B, Regmi S, Cubria MB, Horstmann N, Shelburne SA, Flores AR. The LiaFSR transcriptome reveals an interconnected regulatory network in group A . Infection and Immunity. IAI0021521. PMID 34370508 DOI: 10.1128/IAI.00215-21   
2021 Price EE, Rudra P, Norambuena J, Román-Rodríguez F, Boyd JM. Tools, strains, and strategies to effectively conduct anaerobic and aerobic transcriptional reporter screens and assays in . Applied and Environmental Microbiology. AEM0110821. PMID 34406831 DOI: 10.1128/AEM.01108-21   
2021 Dai P, Lv Y, Gong X, Han J, Gao P, Xu H, Zhang Y, Zhang X. RNA-Seq Analysis of the Effect of Zinc Deficiency on , Gene Is Important for Growth and Pathogenicity. Frontiers in Cellular and Infection Microbiology. 11: 727665. PMID 34604111 DOI: 10.3389/fcimb.2021.727665   
2021 Yang W, Liu P, Zheng Y, Wang Z, Huang W, Jiang H, Lv Q, Ren Y, Jiang Y, Sun L. Transcriptomic analyses and Experimental verification reveal potential biomarkers and biological pathways of urinary tract infection. Bioengineered. PMID 34592898 DOI: 10.1080/21655979.2021.1987081   
2021 Channappa M, Sharma S, Kulshreshtha D, Singh K, Bhardwaj SC, Murugasamy S, Sindhu A, Vikas VK, Aggarwal R. Transcriptome profiling and differential gene expression analysis provides insights into 24-based resistance in wheat against . 3 Biotech. 11: 455. PMID 34631354 DOI: 10.1007/s13205-021-02972-9   
2021 Thai SN, Lum MR, Naegle J, Onofre M, Abdulla H, Garcia A, Fiterz A, Arnell A, Lwin TT, Kavanaugh A, Hikmat Z, Garabedian N, Ngo RT, Dimaya B, Escamilla A, et al. Multiple copies of in regulate flagellar gene expression, motility, and biofilm formation. Journal of Bacteriology. JB0029321. PMID 34543106 DOI: 10.1128/JB.00293-21   
2021 de Araújo HL, Martins BP, Vicente AM, Lorenzetti APR, Koide T, Marques MV. Cold Regulation of Genes Encoding Ion Transport Systems in the Oligotrophic Bacterium Caulobacter crescentus. Microbiology Spectrum. 9: e0071021. PMID 34479415 DOI: 10.1128/Spectrum.00710-21   
2021 Luo C, Liu J, Bilal M, Liu X, Wang X, Dong F, Liu Y, Zang S, Yin X, Yang X, Zhu T, Zhang S, Zhang W, Li B. Extracellular lipopeptide bacillomycin L regulates serial expression of genes for modulating multicellular behavior in Bacillus velezensis Bs916. Applied Microbiology and Biotechnology. PMID 34477941 DOI: 10.1007/s00253-021-11524-3   
2021 Reiter T, Montpetit R, Runnebaum R, Brown CT, Montpetit B. Charting Shifts in Saccharomyces cerevisiae Gene Expression across Asynchronous Time Trajectories with Diffusion Maps. Mbio. e0234521. PMID 34607457 DOI: 10.1128/mBio.02345-21   
2021 Jadav A, Truong K. Generation of stable cell lines using readthrough expression from lentiviral integration. Biotechnology Letters. PMID 34533680 DOI: 10.1007/s10529-021-03186-y   
2021 Schuster LA, Reisch CR. A plasmid toolbox for controlled gene expression across the Proteobacteria. Nucleic Acids Research. 49: 7189-7202. PMID 34125913 DOI: 10.1093/nar/gkab496   
2021 Chung H, Parkhurst CN, Magee EM, Phillips D, Habibi E, Chen F, Yeung BZ, Waldman J, Artis D, Regev A. Joint single-cell measurements of nuclear proteins and RNA in vivo. Nature Methods. 18: 1204-1212. PMID 34608310 DOI: 10.1038/s41592-021-01278-1   
2021 Riccio G, Nuzzo G, Zazo G, Coppola D, Senese G, Romano L, Costantini M, Ruocco N, Bertolino M, Fontana A, Ianora A, Verde C, Giordano D, Lauritano C. Bioactivity Screening of Antarctic Sponges Reveals Anticancer Activity and Potential Cell Death via Ferroptosis by Mycalols. Marine Drugs. 19. PMID 34436298 DOI: 10.3390/md19080459   
2021 Li Z, Yang J, Peng J, Cheng Z, Liu X, Zhang Z, Bhadauria V, Zhao W, Peng YL. Transcriptional Landscapes of Long Non-coding RNAs and Alternative Splicing in Revealed by RNA-Seq. Frontiers in Plant Science. 12: 723636. PMID 34589103 DOI: 10.3389/fpls.2021.723636   
2021 Grose C, Putman Z, Esposito D. A review of alternative promoters for optimal recombinant protein expression in baculovirus-infected insect cells. Protein Expression and Purification. 186: 105924. PMID 34087362 DOI: 10.1016/j.pep.2021.105924   
2021 Wang Y, Luo X, Zhao Y, Ye X, Yang F, Li Z, Huang Y, Fang X, Huan M, Li D, Cui Z. Integrated Strategies for Enhancing the Expression of the AqCoA Chitosanase in Pichia pastoris by Combined Optimization of Molecular Chaperones Combinations and Copy Numbers via a Novel Plasmid pMC-GAP. Applied Biochemistry and Biotechnology. PMID 34553325 DOI: 10.1007/s12010-021-03668-9   
2021 Natarajan P, Ahn E, Reddy UK, Perumal R, Prom LK, Magill C. RNA-Sequencing in Resistant (QL3) and Susceptible (Theis) Sorghum Cultivars Inoculated With Johnsongrass Isolates of . Frontiers in Genetics. 12: 722519. PMID 34456979 DOI: 10.3389/fgene.2021.722519   
2021 Markus BM, Boydston EA, Lourido S. CRISPR-Mediated Transcriptional Repression in Toxoplasma gondii. Msphere. e0047421. PMID 34643425 DOI: 10.1128/mSphere.00474-21   
2021 Shi K, Zhu X, Wu J, Chen Y, Zhang J, Sun X. Centromere protein E as a novel biomarker and potential therapeutic target for retinoblastoma. Bioengineered. 12: 5950-5970. PMID 34482803 DOI: 10.1080/21655979.2021.1972080   
2021 Chun KH. Discovery of Cellular RhoA Functions by the Integrated Application of Gene Set Enrichment Analysis. Biomolecules & Therapeutics. PMID 34429388 DOI: 10.4062/biomolther.2021.075   
2021 Chen X, Song B, Liu M, Qin L, Dong Z. Understanding the Role of Vib1 in Gene Expression during Cellulose Degradation. Journal of Fungi (Basel, Switzerland). 7. PMID 34436152 DOI: 10.3390/jof7080613   
2021 Thomas AL, Marsman J, Antony J, Schierding W, O'Sullivan JM, Horsfield JA. Transcriptional Regulation of : An Informatics Analysis. Genes. 12. PMID 34440349 DOI: 10.3390/genes12081175   
2021 Pardo-Medina J, Gutiérrez G, Limón MC, Avalos J. The lncRNA Is a -Related Regulatory Element with Broad Effects on the Transcriptome. Non-Coding Rna. 7. PMID 34449676 DOI: 10.3390/ncrna7030046   
2021 Gu H, Li L, Du M, Xu H, Gao M, Liu X, Wei X, Zhong X. Key Gene and Functional Pathways Identified in Unexplained Recurrent Spontaneous Abortion Using Targeted RNA Sequencing and Clinical Analysis. Frontiers in Immunology. 12: 717832. PMID 34421922 DOI: 10.3389/fimmu.2021.717832   
2021 Kumar S, Ruggles A, Logan S, Mazarakis A, Tyson T, Bates M, Grosse C, Reed D, Li Z, Grimwood J, Schmutz J, Saski C. Comparative Transcriptomics of Non-Embryogenic and Embryogenic Callus in Semi-Recalcitrant and Non-Recalcitrant Upland Cotton Lines. Plants (Basel, Switzerland). 10. PMID 34579308 DOI: 10.3390/plants10091775   
2021 Laskar P, Bhattacharya S, Chaudhuri A, Kundu A. Exploring the GRAS gene family in common bean (Phaseolus vulgaris L.): characterization, evolutionary relationships, and expression analyses in response to abiotic stresses. Planta. 254: 84. PMID 34561734 DOI: 10.1007/s00425-021-03725-x   
2021 Duan G, Ma X, Shi Z, Yang Y, Chen H, Huang Q, Yang J. MoSDT1 triggers defense response through modulating phosphorylated proteins in rice. Plant Molecular Biology. PMID 34622380 DOI: 10.1007/s11103-021-01201-4   
2021 Li G, Gu X, Gui S, Guo J, Yi T, Jin D. Transcriptome Analysis of Hormone-and Cuticle-Related Genes in the Development Process of Deutonymph in . Insects. 12. PMID 34442302 DOI: 10.3390/insects12080736   
2021 Hu M, Zou L, Lu J, Yang Z, Chen Y, Xu Y, Sun C. Construction of a 5-feature gene model by support vector machine for classifying osteoporosis samples. Bioengineered. 12: 6821-6830. PMID 34622712 DOI: 10.1080/21655979.2021.1971026   
2021 Felden B, Augagneur Y. Diversity and Versatility in Small RNA-Mediated Regulation in Bacterial Pathogens. Frontiers in Microbiology. 12: 719977. PMID 34447363 DOI: 10.3389/fmicb.2021.719977   
2021 Mwapagha LM, Chibanga V, Shipanga H, Parker MI. New insights from Whole Genome Sequencing: BCLAF1 deletion as a structural variant that predisposes cells towards cellular transformation. Oncology Reports. 46. PMID 34490482 DOI: 10.3892/or.2021.8180   
2021 Li Y, Yu H, Guan H, Li J, Zhang J, Xiang H, Li J, Tan H. Activation of Cryptic Antibiotic Biosynthetic Gene Clusters Guided by RNA-seq Data from Both and ΔwblA. Antibiotics (Basel, Switzerland). 10. PMID 34572679 DOI: 10.3390/antibiotics10091097   
2021 Villarroel CA, Bastías M, Canessa P, Cubillos FA. Uncovering Divergence in Gene Expression Regulation in the Adaptation of Yeast to Nitrogen Scarcity. Msystems. 6: e0046621. PMID 34427519 DOI: 10.1128/mSystems.00466-21   
2021 Guo YQ, Yang Y, Chai Y, Gao LL, Ma R. Identification and Evaluation of Reference Genes for Quantitative PCR Normalization in Alligator Weed Flea Beetle (Coleoptera: Chrysomelidae). Journal of Insect Science (Online). 21. PMID 34591086 DOI: 10.1093/jisesa/ieab067   
2021 Zhao K, Kong D, Jin B, Smolke CD, Rhee SY. A novel form of bivalent chromatin associates with rapid induction of camalexin biosynthesis genes in response to a pathogen signal in Arabidopsis. Elife. 10. PMID 34523419 DOI: 10.7554/eLife.69508   
2021 Zhong XL, Qian BP, Huang JC, Zhao SZ, Li Y, Qiu Y. Low expression of TCP1 (T-Complex 1) and PSMC1 (Proteasome 26S subunit, ATPase 1) in heterotopic ossification during ankylosing spondylitis. Bioengineered. 12: 7459-7469. PMID 34612770 DOI: 10.1080/21655979.2021.1975981   
2021 Wang B, Gong S, Shao W, Han L, Li Z, Zhang Z, Zheng Y, Ouyang F, Ma Y, Xu W, Feng Y. Comprehensive analysis of pivotal biomarkers, immune cell infiltration and therapeutic drugs for steroid-induced osteonecrosis of the femoral head. Bioengineered. 12: 5971-5984. PMID 34488536 DOI: 10.1080/21655979.2021.1972081   
2021 Grieshaber NA, Runac J, Turner S, Dean M, Appa C, Omsland A, Grieshaber SS. The sRNA Regulated Protein DdbA Is Involved in Development and Maintenance of the Chlamydia trachomatis EB Cell Form. Frontiers in Cellular and Infection Microbiology. 11: 692224. PMID 34368013 DOI: 10.3389/fcimb.2021.692224   
2021 Huberman LB, Wu VW, Lee J, Daum C, O'Malley RC, Glass NL. Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing. Msphere. e0056421. PMID 34523983 DOI: 10.1128/mSphere.00564-21   
2021 Xie Z, Rui W, Yuan Y, Song X, Liu X, Gong X, Bao J, Zhang S, Shahrokh K, Tao S. Analysis of Gene Family and Its Function on Cell Lignification in Pears (). Plants (Basel, Switzerland). 10. PMID 34579408 DOI: 10.3390/plants10091874   
2021 Shi Q, Tang B, Li Y, Li Y, Lin T, He D, Wei G. Identification of CDC20 as a Novel Biomarker in Diagnosis and Treatment of Wilms Tumor. Frontiers in Pediatrics. 9: 663054. PMID 34513754 DOI: 10.3389/fped.2021.663054   
2021 Liang W, Zou X, Li G, Zhou S, Tian C, Schaefke B. Systematic Analysis of Monoallelic Gene Expression and Chromatin Accessibility Across Multiple Tissues in Hybrid Mice. Frontiers in Cell and Developmental Biology. 9: 717555. PMID 34631706 DOI: 10.3389/fcell.2021.717555   
2021 Liu K, Hu XR, Zhao LX, Wang Y, Deng Z, Tao M. Enhancing Ristomycin A Production by Overexpression of ParB-Like StrR Family Regulators Controlling the Biosynthesis Genes. Applied and Environmental Microbiology. 87: e0106621. PMID 34505824 DOI: 10.1128/AEM.01066-21   
2021 Liu Y, Cui S, Sun J, Yan X, Han D. Identification of Potential Biomarkers for Psoriasis by DNA Methylation and Gene Expression Datasets. Frontiers in Genetics. 12: 722803. PMID 34512732 DOI: 10.3389/fgene.2021.722803   
2021 Huang J, Zhang Q, He Y, Liu W, Xu Y, Liu K, Xian F, Li J, Hu J. Genome-Wide Identification, Expansion Mechanism and Expression Profiling Analysis of   Gene Family in Gramineae Crops. International Journal of Molecular Sciences. 22. PMID 34445464 DOI: 10.3390/ijms22168758   
2021 Huang G, Kawabe Y, Shirakawa K, Akiyama T, Kamihira M. Novel transgenic Chlamydomonas reinhardtii strain with retargetable genomic transgene integration using Cre-loxP system. Journal of Bioscience and Bioengineering. PMID 34420898 DOI: 10.1016/j.jbiosc.2021.07.006   
2021 Tonnessen BW, Bossa-Castro AM, Martin F, Leach JE. Intergenic spaces: A new frontier to improving plant health. The New Phytologist. PMID 34478160 DOI: 10.1111/nph.17706   
2021 Liu J, Wu S, Sun J, Sun J, Wang H, Cao X, Lu J, Jalal A, Wang C. Genome-wide analysis reveals widespread roles for RcREM genes in floral organ development in Rosa chinensis. Genomics. PMID 34571174 DOI: 10.1016/j.ygeno.2021.09.017   
2021 Ouyang X, Zeng Y, Jiang X, Xu H, Ning Y. Identification of Vital Hub Genes and Potential Molecular Pathways of Dermatomyositis by Bioinformatics Analysis. Biomed Research International. 2021: 9991726. PMID 34580642 DOI: 10.1155/2021/9991726