| Year |
Citation |
Score |
| 2024 |
Mohebbi F, Zelikovsky A, Mangul S, Chowell G, Skums P. Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks. Nature Communications. 15: 2838. PMID 38565543 DOI: 10.1038/s41467-024-47304-6 |
0.611 |
|
| 2024 |
Yu D, Ayyala R, Sadek SH, Chittampalli L, Farooq H, Jung J, Nahid AA, Boldirev G, Jung M, Park S, Nguyen A, Zelikovsky A, Mancuso N, Joo JWJ, Thompson RF, et al. A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data. Biorxiv : the Preprint Server For Biology. PMID 38293199 DOI: 10.1101/2023.05.22.541750 |
0.594 |
|
| 2022 |
Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, ... ... Zelikovsky A, et al. Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nature Methods. 19: 374-380. PMID 35396471 DOI: 10.1038/s41592-022-01444-z |
0.56 |
|
| 2021 |
Alser M, Rotman J, Deshpande D, Taraszka K, Shi H, Baykal PI, Yang HT, Xue V, Knyazev S, Singer BD, Balliu B, Koslicki D, Skums P, Zelikovsky A, Alkan C, et al. Technology dictates algorithms: recent developments in read alignment. Genome Biology. 22: 249. PMID 34446078 DOI: 10.1186/s13059-021-02443-7 |
0.615 |
|
| 2021 |
Knyazev S, Tsyvina V, Shankar A, Melnyk A, Artyomenko A, Malygina T, Porozov YB, Campbell EM, Switzer WM, Skums P, Mangul S, Zelikovsky A. Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction. Nucleic Acids Research. PMID 34214168 DOI: 10.1093/nar/gkab576 |
0.611 |
|
| 2021 |
Knyazev S, Chhugani K, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Comarova Z, Lu A, Sarwal V, Porozov Y, Wu A, Abedalthagafi M, Nagaraj S, Smith A, Skums P, ... ... Zelikovsky A, et al. Unlocking capacities of viral genomics for the COVID-19 pandemic response. Arxiv. PMID 33948451 |
0.602 |
|
| 2020 |
Mandric I, Rotman J, Yang HT, Strauli N, Montoya DJ, Van Der Wey W, Ronas JR, Statz B, Yao D, Petrova V, Zelikovsky A, Spreafico R, Shifman S, Zaitlen N, Rossetti M, et al. Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing. Nature Communications. 11: 4499. PMID 32887888 DOI: 10.1038/S41467-020-18509-2 |
0.627 |
|
| 2020 |
Knyazev S, Hughes L, Skums P, Zelikovsky A. Epidemiological data analysis of viral quasispecies in the next-generation sequencing era. Briefings in Bioinformatics. PMID 32568371 DOI: 10.1093/Bib/Bbaa101 |
0.354 |
|
| 2020 |
Mandric I, Rotman J, Yang HT, Strauli N, Montoya DJ, Van Der Wey W, Ronas JR, Statz B, Yao D, Petrova V, Zelikovsky A, Spreafico R, Shifman S, Zaitlen N, Rossetti M, et al. Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing. Nature Communications. 11: 3126. PMID 32561710 DOI: 10.1038/S41467-020-16857-7 |
0.625 |
|
| 2020 |
Mitchell K, Brito JJ, Mandric I, Wu Q, Knyazev S, Chang S, Martin LS, Karlsberg A, Gerasimov E, Littman R, Hill BL, Wu NC, Yang HT, Hsieh K, Chen L, ... Zelikovsky A, et al. Benchmarking of computational error-correction methods for next-generation sequencing data. Genome Biology. 21: 71. PMID 32183840 DOI: 10.1186/S13059-020-01988-3 |
0.646 |
|
| 2020 |
Lähnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Campbell KR, Beerenwinkel N, Mahfouz A, Pinello L, Skums P, Stamatakis A, Attolini CS, Aparicio S, ... Zelikovsky A, et al. Eleven grand challenges in single-cell data science. Genome Biology. 21: 31. PMID 32033589 DOI: 10.1186/S13059-020-1926-6 |
0.309 |
|
| 2020 |
Brito JJ, Mosqueiro T, Rotman J, Xue V, Chapski DJ, la Hoz J, Matias P, Martin LS, Zelikovsky A, Pellegrini M, Mangul S. Telescope: an interactive tool for managing large-scale analysis from mobile devices. Gigascience. 9. PMID 31972019 DOI: 10.1093/Gigascience/Giz163 |
0.599 |
|
| 2019 |
Mangul S, Martin LS, Hill BL, Lam AK, Distler MG, Zelikovsky A, Eskin E, Flint J. Systematic benchmarking of omics computational tools. Nature Communications. 10: 1393. PMID 30918265 DOI: 10.1038/S41467-019-09406-4 |
0.617 |
|
| 2019 |
Zelikovsky A, Mandric I, Skums P, Mandoiu I, Pasaniuc B, Srivastava P. Abstract LB-214: Imputation of single cell cancer genotypes Cancer Research. 79. DOI: 10.1158/1538-7445.Am2019-Lb-214 |
0.346 |
|
| 2018 |
Sims S, Longmire AG, Campo DS, Ramachandran S, Medrzycki M, Ganova-Raeva L, Lin Y, Sue A, Thai H, Zelikovsky A, Khudyakov Y. Automated quality control for a molecular surveillance system. Bmc Bioinformatics. 19: 358. PMID 30343674 DOI: 10.1186/S12859-018-2329-5 |
0.318 |
|
| 2018 |
Tsyvina V, Campo DS, Sims S, Zelikovsky A, Khudyakov Y, Skums P. Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants. Bmc Bioinformatics. 19: 360. PMID 30343669 DOI: 10.1186/S12859-018-2333-9 |
0.346 |
|
| 2018 |
Mandric I, Knyazev S, Zelikovsky A. Repeat aware evaluation of scaffolding tools. Bioinformatics (Oxford, England). PMID 29547882 DOI: 10.1093/Bioinformatics/Bty131 |
0.352 |
|
| 2018 |
Skums P, Zelikovsky A, Singh R, Gussler W, Dimitrova Z, Knyazev S, Mandric I, Ramachandran S, Campo D, Jha D, Bunimovich L, Costenbader E, Sexton C, O'Connor S, Xia GL, et al. QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Bioinformatics (Oxford, England). 34: 163-170. PMID 29304222 DOI: 10.1093/Bioinformatics/Btx402 |
0.343 |
|
| 2017 |
Glebova O, Knyazev S, Melnyk A, Artyomenko A, Khudyakov Y, Zelikovsky A, Skums P. Inference of genetic relatedness between viral quasispecies from sequencing data. Bmc Genomics. 18: 918. PMID 29244009 DOI: 10.1186/S12864-017-4274-5 |
0.324 |
|
| 2017 |
Yu N, Guo X, Zelikovsky A, Pan Y. GaussianCpG: a Gaussian model for detection of CpG island in human genome sequences. Bmc Genomics. 18: 392. PMID 28589860 DOI: 10.1186/S12864-017-3731-5 |
0.303 |
|
| 2017 |
Mangul S, Yang HT, Hormozdiari F, Dainis A, Tseng E, Ashley EA, Zelikovsky A, Eskin E. HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. Ieee Transactions On Nanobioscience. PMID 28328508 DOI: 10.1109/Tnb.2017.2675981 |
0.658 |
|
| 2016 |
Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 27901586 DOI: 10.1089/Cmb.2016.0146 |
0.659 |
|
| 2016 |
Temate-Tiagueu Y, Seesi SA, Mathew M, Mandric I, Rodriguez A, Bean K, Cheng Q, Glebova O, Măndoiu I, Lopanik NB, Zelikovsky A. Inferring metabolic pathway activity levels from RNA-Seq data. Bmc Genomics. 17: 542. PMID 27585456 DOI: 10.1186/S12864-016-2823-Y |
0.524 |
|
| 2016 |
Mangul S, Taegyun Yang H, Hormozdiari F, Tseng E, Zelikovsky A, Eskin E. HapIso: An accurate method for the haplotype-specific isoforms reconstruction from long single-molecule reads Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9683: 80-92. DOI: 10.1007/978-3-319-38782-6_7 |
0.62 |
|
| 2016 |
Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. Long single-molecule reads can resolve the complexity of the influenza virus composed of rare, closely related mutant variants Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9649: 164-175. DOI: 10.1007/978-3-319-31957-5_12 |
0.633 |
|
| 2015 |
Ding X, Wang J, Zelikovsky A, Guo X, Xie M, Pan Y. Searching High-Order SNP Combinations for Complex Diseases Based on Energy Distribution Difference. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 695-704. PMID 26357280 DOI: 10.1109/Tcbb.2014.2363459 |
0.352 |
|
| 2015 |
Mandric I, Zelikovsky A. ScaffMatch: scaffolding algorithm based on maximum weight matching. Bioinformatics (Oxford, England). PMID 25890305 DOI: 10.1093/Bioinformatics/Btv211 |
0.347 |
|
| 2015 |
Skums P, Artyomenko A, Glebova O, Ramachandran S, Mandoiu I, Campo DS, Dimitrova Z, Zelikovsky A, Khudyakov Y. Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling. Bioinformatics (Oxford, England). 31: 682-90. PMID 25359889 DOI: 10.1093/Bioinformatics/Btu726 |
0.359 |
|
| 2015 |
Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. 2SNV: Quasispecies reconstruction from PacBio reads 2015 Ieee 5th International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2015. DOI: 10.1109/ICCABS.2015.7344730 |
0.632 |
|
| 2014 |
Al Seesi S, Tiagueu YT, Zelikovsky A, Măndoiu II. Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates. Bmc Genomics. 15: S2. PMID 25435284 DOI: 10.1186/1471-2164-15-S8-S2 |
0.353 |
|
| 2014 |
Lindsay J, Salooti H, Măndoiu I, Zelikovsky A. ILP-based maximum likelihood genome scaffolding. Bmc Bioinformatics. 15: S9. PMID 25253180 DOI: 10.1186/1471-2105-15-S9-S9 |
0.376 |
|
| 2014 |
Mangul S, Caciula A, Al Seesi S, Brinza D, Mӑndoiu I, Zelikovsky A. Transcriptome assembly and quantification from Ion Torrent RNA-Seq data. Bmc Genomics. 15: S7. PMID 25082147 DOI: 10.1186/1471-2164-15-S5-S7 |
0.755 |
|
| 2014 |
Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. Accurate viral population assembly from ultra-deep sequencing data. Bioinformatics (Oxford, England). 30: i329-37. PMID 24932001 DOI: 10.1093/Bioinformatics/Btu295 |
0.665 |
|
| 2014 |
Caciula A, Glebova O, Artyomenko A, Mangul S, Lindsay J, Məndoiu II, Zelikovsky A. Deterministic regression algorithm for transcriptome frequency estimation 2014 Ieee 4th International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2014. DOI: 10.1109/ICCABS.2014.6863946 |
0.604 |
|
| 2014 |
Artyomenko A, Mangul S, Wu NC, Eskin E, Sun R, Zelikovsky A. Reconstruction of influenza a virus variants from PacBio reads 2014 Ieee 4th International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2014. DOI: 10.1109/ICCABS.2014.6863935 |
0.612 |
|
| 2014 |
Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. VGA: A method for viral quasispecies assembly from ultra-deep sequencing data 2014 Ieee 4th International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2014. DOI: 10.1109/ICCABS.2014.6863932 |
0.633 |
|
| 2013 |
Skums P, Mancuso N, Artyomenko A, Tork B, Mandoiu I, Khudyakov Y, Zelikovsky A. Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows. Bmc Bioinformatics. 14: S2. PMID 23902469 DOI: 10.1186/1471-2105-14-S9-S2 |
0.8 |
|
| 2013 |
Caciula A, Zelikovsky A, Mangul S, Lindsay J, Mandoiu I. Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data 2013 Ieee 3rd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2013. DOI: 10.1109/ICCABS.2013.6629228 |
0.606 |
|
| 2013 |
Mangul S, Caciula A, Seesi SA, Brinza D, Banday AR, Kanadia R, Mandoiu I, Zelikovsky A. Flexible approach for novel transcript reconstruction from RNA-seq data using maximum likelihood integer programming 5th International Conference On Bioinformatics and Computational Biology 2013, Bicob 2013. 25-33. |
0.718 |
|
| 2012 |
Skums P, Dimitrova Z, Campo DS, Vaughan G, Rossi L, Forbi JC, Yokosawa J, Zelikovsky A, Khudyakov Y. Efficient error correction for next-generation sequencing of viral amplicons. Bmc Bioinformatics. 13: S6. PMID 22759430 DOI: 10.1186/1471-2105-13-S10-S6 |
0.376 |
|
| 2012 |
Mangul S, Caciula A, Brinza D, Mandoiu II, Zelikovsky A. TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads Bmc Bioinformatics. 13. DOI: 10.1186/1471-2105-13-S18-A11 |
0.759 |
|
| 2012 |
Mangul S, Caciula A, Mandoiu I, Zelikovsky A. Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution 2012 Ieee 2nd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2012. DOI: 10.1109/ICCABS.2012.6182673 |
0.628 |
|
| 2012 |
Mancuso N, Tork B, Skums P, Ganova-Raeva L, Mǎndoiu I, Zelikovsky A. Workshop: A maximum likelihood method for quasispecies spectrum assembly 2012 Ieee 2nd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2012. DOI: 10.1109/ICCABS.2012.6182672 |
0.782 |
|
| 2011 |
Mangul S, Caciula A, Glebova O, Mandoiu I, Zelikovsky A. Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations. In Silico Biology. 11: 251-61. PMID 23202426 DOI: 10.3233/Isb-2012-0459 |
0.664 |
|
| 2011 |
Mancuso N, Tork B, Skums P, Ganova-Raeva L, Măndoiu I, Zelikovsky A. Reconstructing viral quasispecies from NGS amplicon reads. In Silico Biology. 11: 237-49. PMID 23202425 DOI: 10.3233/Isb-2012-0458 |
0.796 |
|
| 2011 |
Astrovskaya I, Tork B, Mangul S, Westbrooks K, Măndoiu I, Balfe P, Zelikovsky A. Inferring viral quasispecies spectra from 454 pyrosequencing reads. Bmc Bioinformatics. 12: S1. PMID 21989211 DOI: 10.1186/1471-2105-12-S6-S1 |
0.79 |
|
| 2011 |
Nicolae M, Mangul S, Măndoiu II, Zelikovsky A. Estimation of alternative splicing isoform frequencies from RNA-Seq data. Algorithms For Molecular Biology : Amb. 6: 9. PMID 21504602 DOI: 10.1186/1748-7188-6-9 |
0.659 |
|
| 2011 |
Cheng Q, Zelikovsky A. Combinatorial Optimization Algorithms for Metabolic Networks Alignments and Their Applications International Journal of Knowledge Discovery in Bioinformatics. 2: 1-23. DOI: 10.4018/Jkdb.2011010101 |
0.537 |
|
| 2011 |
Mangul S, Caciula A, Mandoiu I, Zelikovsky A. RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes 2011 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2011. 118-123. DOI: 10.1109/BIBMW.2011.6112363 |
0.625 |
|
| 2011 |
Mancuso N, Tork B, Skums P, Mǎndoiu I, Zelikovsky A. Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads 2011 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2011. 94-101. DOI: 10.1109/BIBMW.2011.6112360 |
0.785 |
|
| 2011 |
Mangul S, Astrovskaya I, Nicolae M, Tork B, Mandoiu I, Zelikovsky A. Maximum likelihood estimation of incomplete genomic spectrum from HTS data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6833: 213-224. DOI: 10.1007/978-3-642-23038-7_19 |
0.789 |
|
| 2010 |
Cheng Q, Ogihara M, Wei J, Zelikovsky A. WS-GraphMatching: A web service tool for graph matching International Conference On Information and Knowledge Management, Proceedings. 1949-1950. DOI: 10.1145/1871437.1871779 |
0.42 |
|
| 2010 |
Cheng Q, Wei J, Zelikovsky A, Ogihara M. Fixed-parameter tractable combinatorial algorithms for metabolic networks alignments Proceedings - Ieee International Conference On Data Mining, Icdm. 679-686. DOI: 10.1109/ICDMW.2010.179 |
0.48 |
|
| 2010 |
Cheng Q, Berman P, Harrison R, Zelikovsky A. Efficient alignments of metabolic networks with bounded treewidth Proceedings - Ieee International Conference On Data Mining, Icdm. 687-694. DOI: 10.1109/ICDMW.2010.150 |
0.469 |
|
| 2009 |
Cheng Q, Harrison R, Zelikovsky A. MetNetAligner: a web service tool for metabolic network alignments. Bioinformatics (Oxford, England). 25: 1989-90. PMID 19414533 DOI: 10.1093/Bioinformatics/Btp287 |
0.53 |
|
| 2009 |
Gremalschi S, Altun G, Astrovskaya I, Zelikovsky A. Mean square residue biclustering with missing data and row inversions Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5542: 28-39. DOI: 10.1007/978-3-642-01551-9_4 |
0.751 |
|
| 2009 |
Cheng Q, Zelikovsky A. Network Mapping of Metabolic Pathways Analysis of Complex Networks: From Biology to Linguistics. 271-293. DOI: 10.1002/9783527627981.ch11 |
0.4 |
|
| 2008 |
Brinza D, Zelikovsky A. 2SNP: scalable phasing method for trios and unrelated individuals. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 5: 313-8. PMID 18451440 DOI: 10.1109/Tcbb.2007.1068 |
0.649 |
|
| 2008 |
Brinza D, Zelikovsky A. Design and validation of methods searching for risk factors in genotype case-control studies. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 81-90. PMID 18199025 DOI: 10.1089/Cmb.2007.0081 |
0.661 |
|
| 2008 |
Cheng Q, Berman P, Harrison R, Zelikovsky A. Fast alignments of metabolic networks Proceedings - Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2008. 147-152. DOI: 10.1109/BIBM.2008.75 |
0.476 |
|
| 2007 |
Nolte IM, de Vries AR, Spijker GT, Jansen RC, Brinza D, Zelikovsky A, Te Meerman GJ. Association testing by haplotype-sharing methods applicable to whole-genome analysis. Bmc Proceedings. 1: S129. PMID 18466471 DOI: 10.1186/1753-6561-1-S1-S129 |
0.655 |
|
| 2007 |
He J, Zelikovsky A. Informative SNP selection methods based on SNP prediction. Ieee Transactions On Nanobioscience. 6: 60-7. PMID 17393851 DOI: 10.1109/Tnb.2007.891901 |
0.612 |
|
| 2007 |
Brinza D, Zelikovsky A. Risk factor searching heuristics for SNP case-control studies Proceedings - 2007 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2007. 282-287. DOI: 10.1109/BIBM.2007.7 |
0.609 |
|
| 2007 |
Cheng Q, Harrison R, Zelikovsky A. Homomorphisms of multisource trees into networks with applications to metabolic pathways Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 350-357. DOI: 10.1109/BIBE.2007.4375587 |
0.452 |
|
| 2007 |
Brinza D, Zelikovsky A. Discrete methods for association search and status prediction in genotype case-control studies Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 270-277. DOI: 10.1109/BIBE.2007.4375576 |
0.629 |
|
| 2007 |
Brinza D, He J, Zelikovsky A. Optimization Methods for Genotype Data Analysis in Epidemiological Studies Bioinformatics Algorithms: Techniques and Applications. 395-415. DOI: 10.1002/9780470253441.ch18 |
0.709 |
|
| 2007 |
Hundewale N, Jung S, Zelikovsky A. Energy efficient node caching and load balancing enhancement of reactive ad hoc routing protocols Journal of Universal Computer Science. 13: 110-132. |
0.697 |
|
| 2006 |
Brinza D, He J, Zelikovsky A. Combinatorial search methods for multi-SNP disease association. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 5802-5. PMID 17946721 DOI: 10.1109/IEMBS.2006.260510 |
0.727 |
|
| 2006 |
He J, Zelikovsky A. Multiple linear regression for index SNP selection on unphased genotypes. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 5759-62. PMID 17946329 DOI: 10.1109/IEMBS.2006.259408 |
0.566 |
|
| 2006 |
He J, Zelikovsky A. MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression. Bioinformatics (Oxford, England). 22: 2558-61. PMID 16895924 DOI: 10.1093/Bioinformatics/Btl420 |
0.611 |
|
| 2006 |
Brinza D, Zelikovsky A. 2SNP: scalable phasing based on 2-SNP haplotypes. Bioinformatics (Oxford, England). 22: 371-3. PMID 16287933 DOI: 10.1093/Bioinformatics/Bti785 |
0.647 |
|
| 2006 |
Brinza D, Zelikovsky A. DEEPS: Deterministic energy-efficient protocol for sensor networks Proc. - Seventh Acis Int. Conf. On Software Eng., Artific. Intelligence, Netw., and Parallel/Distributed Comput., Snpd 2006, Including Second Acis Int. Worshop On Sawn 2006. 2006: 261-266. DOI: 10.1109/SNPD-SAWN.2006.31 |
0.567 |
|
| 2006 |
Cheng Q, Zhang Y, Hu X, Hundewale N, Zelikovsky A. Routing using messengers in sparse and disconnected mobile sensor networks Studies in Computational Intelligence. 23: 31-40. DOI: 10.1007/3-540-33880-2_4 |
0.737 |
|
| 2006 |
Brinza D, Zelikovsky A. Phasing of 2-SNP genotypes based on non-random mating model Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3992: 767-774. DOI: 10.1007/11758525_103 |
0.626 |
|
| 2006 |
He J, Zelikovsky A. Tag SNP selection based on multivariate linear regression Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3992: 750-757. DOI: 10.1007/11758525_101 |
0.589 |
|
| 2006 |
Mao W, Brinza D, Hundewale N, Gremalschi S, Zelikovsky A. Genotype susceptibility and integrated risk factors for complex diseases 2006 Ieee International Conference On Granular Computing. 754-757. |
0.737 |
|
| 2006 |
He J, Zhang J, Altun G, Zelikovsky A, Zhang Y. Haplotype tagging using support vector machines 2006 Ieee International Conference On Granular Computing. 758-761. |
0.585 |
|
| 2006 |
Altun G, Hu HJ, Brinza D, Harrison RW, Zelikovsky A, Pan Y. Hybrid SVM kernels for protein secondary structure prediction 2006 Ieee International Conference On Granular Computing. 762-765. |
0.594 |
|
| 2006 |
Brinza D, Zelikovsky A. Combinatorial methods for disease association search and susceptibility prediction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4175: 286-297. |
0.642 |
|
| 2005 |
He J, Westbrooks K, Zelikovsky A. Linear reduction method for predictive and informative tag SNP selection. International Journal of Bioinformatics Research and Applications. 1: 249-60. PMID 18048134 DOI: 10.1504/Ijbra.2005.007904 |
0.619 |
|
| 2005 |
Brinza D, He J, Mao W, Zelikovsky A. Family trio phasing and missing data recovery. International Journal of Bioinformatics Research and Applications. 1: 221-9. PMID 18048132 DOI: 10.1504/Ijbra.2005.007580 |
0.773 |
|
| 2005 |
Mao W, He J, Brinza D, Zelikovsky A. A combinatorial method for predicting genetic susceptibility to complex diseases. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 224-7. PMID 17282153 DOI: 10.1109/IEMBS.2005.1616384 |
0.767 |
|
| 2005 |
Jung S, Hundewale N, Zelikovsky A. Node caching enhancement of reactive ad hoc routing protocols Ieee Wireless Communications and Networking Conference, Wcnc. 4: 1970-1975. DOI: 10.1109/WCNC.2005.1424821 |
0.694 |
|
| 2005 |
Chen Y, Kahng AB, Robins G, Zelikovsky A, Zheng Y. Compressible area fill synthesis Ieee Transactions On Computer-Aided Design of Integrated Circuits and Systems. 24: 1169-1187. DOI: 10.1109/Tcad.2005.850859 |
0.315 |
|
| 2005 |
Jung S, Hundewale N, Zelikovsky A. Energy efficiency of load balancing in MANET routing protocols Proceedings - Sixth Int. Conf. On Softw. Eng., Artificial Intelligence, Netw. and Parallel/Distributed Computing and First Acis Int. Workshop On Self-Assembling Wireless Netw., Snpd/Sawn 2005. 2005: 476-483. DOI: 10.1109/SNPD-SAWN.2005.34 |
0.689 |
|
| 2005 |
Brinza D, Calinescu G, Tongngam S, Zelikovsky A. Energy-efficient continuous and event-driven monitoring 2nd Ieee International Conference On Mobile Ad-Hoc and Sensor Systems, Mass 2005. 2005: 167-169. DOI: 10.1109/MAHSS.2005.1542792 |
0.584 |
|
| 2005 |
Brinza D, He J, Mao W, Zelikovsky A. Phasing and missing data recovery in family trios Lecture Notes in Computer Science. 3515: 1011-1019. |
0.764 |
|
| 2004 |
Atlas M, Hundewale N, Perelygina L, Zelikovsky A. Consolidating software tools for DNA microarray design and manufacturing. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 172-5. PMID 17271633 DOI: 10.1109/IEMBS.2004.1403119 |
0.718 |
|
| 2004 |
He J, Zelikovsky A. Linear reduction methods for tag SNP selection. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 4: 2840-3. PMID 17270869 DOI: 10.1109/IEMBS.2004.1403810 |
0.582 |
|
| 2004 |
He J, Zelikovsky A. Linear reduction for haplotype inference Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3240: 242-253. |
0.601 |
|
| 2002 |
Chen Y, Kahng AB, Robins G, Zelikovsky A. Area fill synthesis for uniform layout density Ieee Transactions On Computer-Aided Design of Integrated Circuits and Systems. 21: 1132-1147. DOI: 10.1109/Tcad.2002.802278 |
0.304 |
|
| 2002 |
Dragan FF, Kahng AB, Mǎndoiu II, Muddu S, Zelikovsky A. Provably good global buffering by generalized multiterminal multicommodity flow approximation Ieee Transactions On Computer-Aided Design of Integrated Circuits and Systems. 21: 263-274. DOI: 10.1109/43.986421 |
0.314 |
|
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