| Year |
Citation |
Score |
| 2018 |
Smillie CS, Sauk J, Gevers D, Friedman J, Sung J, Youngster I, Hohmann EL, Staley C, Khoruts A, Sadowsky MJ, Allegretti JR, Smith MB, Xavier RJ, Alm EJ. Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation. Cell Host & Microbe. 23: 229-240.e5. PMID 29447696 DOI: 10.1016/J.Chom.2018.01.003 |
0.347 |
|
| 2018 |
Britton GJ, Contijoch EJ, Mogno I, Vennaro OH, Llewellyn SR, Ng R, Li Z, Mortha A, merad m, Das A, Gevers D, McGovern D, Singh N, Braun J, Jacobs JP, et al. Mo1947 - Inflammatory Bowel Disease-Associated Gut Microbiotas Impact Homeostatic and Pathogenic Intestinal Immune Responses in Gnotobiotic Mice Gastroenterology. 154: S-860-S-861. DOI: 10.1016/S0016-5085(18)32911-1 |
0.318 |
|
| 2017 |
Hall AB, Yassour M, Sauk J, Garner A, Jiang X, Arthur T, Lagoudas GK, Vatanen T, Fornelos N, Wilson R, Bertha M, Cohen M, Garber J, Khalili H, Gevers D, et al. A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients. Genome Medicine. 9: 103. PMID 29183332 DOI: 10.1186/S13073-017-0490-5 |
0.324 |
|
| 2017 |
Atarashi K, Suda W, Luo C, Kawaguchi T, Motoo I, Narushima S, Kiguchi Y, Yasuma K, Watanabe E, Tanoue T, Thaiss CA, Sato M, Toyooka K, Said HS, Yamagami H, ... ... Gevers D, et al. Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation. Science (New York, N.Y.). 358: 359-365. PMID 29051379 DOI: 10.1126/Science.Aan4526 |
0.353 |
|
| 2016 |
Pedamallu CS, Bhatt AS, Bullman S, Fowler S, Freeman SS, Durand J, Jung J, Duke F, Manzo V, Cai D, Ananthakrishnan A, Ojesina AI, Ramachandran A, Gevers D, Xavier RJ, et al. Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn's Disease. Cellular and Molecular Gastroenterology and Hepatology. 2: 563-566.e5. PMID 28174737 DOI: 10.1016/J.Jcmgh.2016.05.011 |
0.328 |
|
| 2016 |
Imhann F, Vich Vila A, Bonder MJ, Fu J, Gevers D, Visschedijk MC, Spekhorst LM, Alberts R, Franke L, van Dullemen HM, Ter Steege RW, Huttenhower C, Dijkstra G, Xavier RJ, Festen EA, et al. Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease. Gut. PMID 27802154 DOI: 10.1136/Gutjnl-2016-312135 |
0.38 |
|
| 2016 |
Brito IL, Yilmaz S, Huang K, Xu L, Jupiter SD, Jenkins AP, Naisilisili W, Tamminen M, Smillie CS, Wortman JR, Birren BW, Xavier RJ, Blainey PC, Singh AK, Gevers D, et al. Mobile genes in the human microbiome are structured from global to individual scales. Nature. PMID 27409808 DOI: 10.1038/Nature18927 |
0.363 |
|
| 2016 |
Yassour M, Vatanen T, Siljander H, Hämäläinen AM, Härkönen T, Ryhänen SJ, Franzosa EA, Vlamakis H, Huttenhower C, Gevers D, Lander ES, Knip M, Xavier RJ. Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability. Science Translational Medicine. 8: 343ra81. PMID 27306663 DOI: 10.1126/Scitranslmed.Aad0917 |
0.384 |
|
| 2016 |
Zhernakova A, Kurilshikov A, Bonder MJ, Tigchelaar EF, Schirmer M, Vatanen T, Mujagic Z, Vila AV, Falony G, Vieira-Silva S, Wang J, Imhann F, Brandsma E, Jankipersadsing SA, Joossens M, ... ... Gevers D, et al. Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science (New York, N.Y.). 352: 565-9. PMID 27126040 DOI: 10.1126/Science.Aad3369 |
0.562 |
|
| 2016 |
Imhann F, Vila AV, Bonder MJ, Gevers D, Fu J, Visschedijk MC, Spekhorst LM, Franke L, Dullemen Hv, Steege RT, Huttenhower C, Dijkstra G, Xavier R, Wijmenga C, Festen EA, et al. 87 Gene-Microbiome Interactions Underlying the Onset and the Clinical Phenotypes of Inflammatory Bowel Disease Gastroenterology. 150. DOI: 10.1016/S0016-5085(16)30198-6 |
0.311 |
|
| 2015 |
Kevans D, Tyler AD, Holm K, Jørgensen KK, Vatn MH, Karlsen TH, Kaplan GG, Eksteen B, Gevers D, Hov JR, Silverberg MS. Characterization of Intestinal Microbiota in Ulcerative Colitis Patients with and without Primary Sclerosing Cholangitis. Journal of Crohn's & Colitis. PMID 26526357 DOI: 10.1093/Ecco-Jcc/Jjv204 |
0.306 |
|
| 2015 |
Cleary B, Brito IL, Huang K, Gevers D, Shea T, Young S, Alm EJ. Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning. Nature Biotechnology. PMID 26368049 DOI: 10.1038/Nbt.3329 |
0.386 |
|
| 2015 |
Fu J, Bonder MJ, Cenit MC, Tigchelaar EF, Maatman A, Dekens JA, Brandsma E, Marczynska J, Imhann F, Weersma RK, Franke L, Poon TW, Xavier RJ, Gevers D, Hofker MH, et al. The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids. Circulation Research. 117: 817-24. PMID 26358192 DOI: 10.1161/Circresaha.115.306807 |
0.311 |
|
| 2015 |
Luo C, Knight R, Siljander H, Knip M, Xavier RJ, Gevers D. ConStrains identifies microbial strains in metagenomic datasets. Nature Biotechnology. 33: 1045-52. PMID 26344404 DOI: 10.1038/Nbt.3319 |
0.364 |
|
| 2015 |
Franzosa EA, Huang K, Meadow JF, Gevers D, Lemon KP, Bohannan BJ, Huttenhower C. Identifying personal microbiomes using metagenomic codes. Proceedings of the National Academy of Sciences of the United States of America. 112: E2930-8. PMID 25964341 DOI: 10.1073/Pnas.1423854112 |
0.335 |
|
| 2015 |
Morgan XC, Kabakchiev B, Waldron L, Tyler AD, Tickle TL, Milgrom R, Stempak JM, Gevers D, Xavier RJ, Silverberg MS, Huttenhower C. Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease. Genome Biology. 16: 67. PMID 25887922 DOI: 10.1186/S13059-015-0637-X |
0.408 |
|
| 2015 |
Yasuda K, Oh K, Ren B, Tickle TL, Franzosa EA, Wachtman LM, Miller AD, Westmoreland SV, Mansfield KG, Vallender EJ, Miller GM, Rowlett JK, Gevers D, Huttenhower C, Morgan XC. Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque. Cell Host & Microbe. 17: 385-91. PMID 25732063 DOI: 10.1016/J.Chom.2015.01.015 |
0.371 |
|
| 2015 |
Kostic AD, Gevers D, Siljander H, Vatanen T, Hyötyläinen T, Hämäläinen AM, Peet A, Tillmann V, Pöhö P, Mattila I, Lähdesmäki H, Franzosa EA, Vaarala O, de Goffau M, Harmsen H, et al. The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. Cell Host & Microbe. 17: 260-73. PMID 25662751 DOI: 10.1016/J.Chom.2015.01.001 |
0.35 |
|
| 2015 |
Norman JM, Handley SA, Baldridge MT, Droit L, Liu CY, Keller BC, Kambal A, Monaco CL, Zhao G, Fleshner P, Stappenbeck TS, McGovern DP, Keshavarzian A, Mutlu EA, Sauk J, ... Gevers D, et al. Disease-specific alterations in the enteric virome in inflammatory bowel disease. Cell. 160: 447-60. PMID 25619688 DOI: 10.1016/J.Cell.2015.01.002 |
0.333 |
|
| 2014 |
Knights D, Silverberg MS, Weersma RK, Gevers D, Dijkstra G, Huang H, Tyler AD, van Sommeren S, Imhann F, Stempak JM, Huang H, Vangay P, Al-Ghalith GA, Russell C, Sauk J, et al. Complex host genetics influence the microbiome in inflammatory bowel disease. Genome Medicine. 6: 107. PMID 25587358 DOI: 10.1186/S13073-014-0107-1 |
0.41 |
|
| 2014 |
Haberman Y, Tickle TL, Dexheimer PJ, Kim MO, Tang D, Karns R, Baldassano RN, Noe JD, Rosh J, Markowitz J, Heyman MB, Griffiths AM, Crandall WV, Mack DR, Baker SS, ... ... Gevers D, et al. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature. The Journal of Clinical Investigation. 124: 3617-33. PMID 25003194 DOI: 10.1172/Jci75436 |
0.322 |
|
| 2014 |
Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C. Relating the metatranscriptome and metagenome of the human gut. Proceedings of the National Academy of Sciences of the United States of America. 111: E2329-38. PMID 24843156 DOI: 10.1073/Pnas.1319284111 |
0.416 |
|
| 2014 |
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, et al. The treatment-naive microbiome in new-onset Crohn's disease. Cell Host & Microbe. 15: 382-92. PMID 24629344 DOI: 10.1016/J.Chom.2014.02.005 |
0.342 |
|
| 2014 |
Kostic AD, Xavier RJ, Gevers D. The microbiome in inflammatory bowel disease: current status and the future ahead. Gastroenterology. 146: 1489-99. PMID 24560869 DOI: 10.1053/J.Gastro.2014.02.009 |
0.395 |
|
| 2014 |
Rooks MG, Veiga P, Wardwell-Scott LH, Tickle T, Segata N, Michaud M, Gallini CA, Beal C, van Hylckama-Vlieg JE, Ballal SA, Morgan XC, Glickman JN, Gevers D, Huttenhower C, Garrett WS. Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission. The Isme Journal. 8: 1403-17. PMID 24500617 DOI: 10.1038/Ismej.2014.3 |
0.356 |
|
| 2014 |
Huang K, Brady A, Mahurkar A, White O, Gevers D, Huttenhower C, Segata N. MetaRef: a pan-genomic database for comparative and community microbial genomics. Nucleic Acids Research. 42: D617-24. PMID 24203705 DOI: 10.1093/Nar/Gkt1078 |
0.33 |
|
| 2014 |
Lee S, Cantarel B, Henrissat B, Gevers D, Birren BW, Huttenhower C, Ko G. Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota. The Isme Journal. 8: 493-503. PMID 24108330 DOI: 10.1038/Ismej.2013.167 |
0.398 |
|
| 2013 |
Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, Duke F, Jung J, Michaud M, Walker BJ, Young S, Earl AM, Kostic AD, Ojesina AI, Hasserjian R, Ballen KK, et al. Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome. The New England Journal of Medicine. 369: 517-28. PMID 23924002 DOI: 10.1056/Nejmoa1211115 |
0.394 |
|
| 2013 |
Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature Methods. 10: 57-9. PMID 23202435 DOI: 10.1038/Nmeth.2276 |
0.3 |
|
| 2013 |
Aagaard K, Petrosino J, Keitel W, Watson M, Katancik J, Garcia N, Patel S, Cutting M, Madden T, Hamilton H, Harris E, Gevers D, Simone G, McInnes P, Versalovic J. The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 27: 1012-22. PMID 23165986 DOI: 10.1096/Fj.12-220806 |
0.304 |
|
| 2013 |
Tyler AD, Huttenhower C, Gevers D, Silverberg MS. Sa1799 Evaluation of Location-Specific, Tissue-Associated Microbiota in the Ileal Pouch, Terminal Ileum and Colon in Inflammatory Bowel Disease (IBD) Gastroenterology. 144. DOI: 10.1016/S0016-5085(13)61110-5 |
0.304 |
|
| 2013 |
Bhatt AS, Freeman S, Herrera A, Pedamallu CS, Gevers D, Jung J, Duke F, Young S, Earl A, Kostic A, Ojesina A, Soriano G, Walker BJ, Soiffer RJ, Antin JH, et al. Sequence-Based Discovery of Novel Bacteria, Bradyrhizobium Enterica, in Cord Colitis Syndrome Biology of Blood and Marrow Transplantation. 19: S281-S282. DOI: 10.1016/J.Bbmt.2012.11.400 |
0.315 |
|
| 2013 |
Ma J, Aagaard K, Gevers D, Milosavljevic A, Bonnen P, Huttenhouer C, Versalovic J. 585: Distinct vaginal microbiome profiles are associated with host mitochondrial DNA (mtDNA) haplogroup and SNP variants American Journal of Obstetrics and Gynecology. 208: S250. DOI: 10.1016/J.Ajog.2012.10.751 |
0.323 |
|
| 2012 |
Gevers D, Pop M, Schloss PD, Huttenhower C. Bioinformatics for the Human Microbiome Project. Plos Computational Biology. 8: e1002779. PMID 23209389 DOI: 10.1371/Journal.Pcbi.1002779 |
0.353 |
|
| 2012 |
Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biology. 13: R79. PMID 23013615 DOI: 10.1186/Gb-2012-13-9-R79 |
0.408 |
|
| 2012 |
Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, Raes J, Huttenhower C. Microbial co-occurrence relationships in the human microbiome. Plos Computational Biology. 8: e1002606. PMID 22807668 DOI: 10.1371/Journal.Pcbi.1002606 |
0.586 |
|
| 2012 |
Papa E, Docktor M, Smillie C, Weber S, Preheim SP, Gevers D, Giannoukos G, Ciulla D, Tabbaa D, Ingram J, Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A, et al. Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. Plos One. 7: e39242. PMID 22768065 DOI: 10.1371/Journal.Pone.0039242 |
0.347 |
|
| 2012 |
Ward DV, Gevers D, Giannoukos G, Earl AM, Methé BA, Sodergren E, Feldgarden M, Ciulla DM, Tabbaa D, Arze C, Appelbaum E, Aird L, Anderson S, Ayvaz T, Belter E, et al. Evaluation of 16s rDNA-based community profiling for human microbiome research Plos One. 7. PMID 22720093 DOI: 10.1371/Journal.Pone.0039315 |
0.362 |
|
| 2012 |
Aagaard K, Riehle K, Ma J, Segata N, Mistretta TA, Coarfa C, Raza S, Rosenbaum S, Van den Veyver I, Milosavljevic A, Gevers D, Huttenhower C, Petrosino J, Versalovic J. A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy. Plos One. 7: e36466. PMID 22719832 DOI: 10.1371/Journal.Pone.0036466 |
0.406 |
|
| 2012 |
Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, et al. Metabolic reconstruction for metagenomic data and its application to the human microbiome. Plos Computational Biology. 8: e1002358. PMID 22719234 DOI: 10.1371/Journal.Pcbi.1002358 |
0.41 |
|
| 2012 |
Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, Gevers D, Petrosino JF, Abubucker S, Badger JH, Chinwalla AT, Earl AM, Fitzgerald MG, Fulton RS, Hallsworth-Pepin K, et al. A framework for human microbiome research Nature. 486: 215-221. PMID 22699610 DOI: 10.1038/Nature11209 |
0.39 |
|
| 2012 |
Huttenhower C, Gevers D, Knight R, Abubucker S, Badger JH, Chinwalla AT, Creasy HH, Earl AM, Fitzgerald MG, Fulton RS, Giglio MG, Hallsworth-Pepin K, Lobos EA, Madupu R, Magrini V, et al. Structure, function and diversity of the healthy human microbiome Nature. 486: 207-214. PMID 22699609 DOI: 10.1038/Nature11234 |
0.379 |
|
| 2012 |
Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, Gevers D, Huttenhower C, Izard J. Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biology. 13: R42. PMID 22698087 DOI: 10.1186/Gb-2012-13-6-R42 |
0.398 |
|
| 2012 |
Ursell LK, Clemente JC, Rideout JR, Gevers D, Caporaso JG, Knight R. The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites. The Journal of Allergy and Clinical Immunology. 129: 1204-8. PMID 22541361 DOI: 10.1016/J.Jaci.2012.03.010 |
0.359 |
|
| 2012 |
Palmer KL, Godfrey P, Griggs A, Kos VN, Zucker J, Desjardins C, Cerqueira G, Gevers D, Walker S, Wortman J, Feldgarden M, Haas B, Birren B, Gilmore MS. Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus. Mbio. 3: e00318-11. PMID 22354958 DOI: 10.1128/Mbio.00318-11 |
0.311 |
|
| 2012 |
Kuczynski J, Lauber CL, Walters WA, Parfrey LW, Clemente JC, Gevers D, Knight R. Experimental and analytical tools for studying the human microbiome. Nature Reviews. Genetics. 13: 47-58. PMID 22179717 DOI: 10.1038/Nrg3129 |
0.359 |
|
| 2012 |
Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, Earl AM, Ojesina AI, Jung J, Bass AJ, Tabernero J, Baselga J, Liu C, Shivdasani RA, Ogino S, Birren BW, et al. Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Research. 22: 292-8. PMID 22009990 DOI: 10.1101/Gr.126573.111 |
0.326 |
|
| 2012 |
Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, Duke F, Jung J, Walker BJ, Young S, Earl A, Kostic A, Ojesina AI, Soriano G, Antin JH, Soiffer RJ, et al. Next-Generation Sequencing for the Identification of Transplantation-Associated Pathogens Blood. 120: LBA-4-LBA-4. DOI: 10.1182/Blood.V120.21.Lba-4.Lba-4 |
0.408 |
|
| 2011 |
Schloss PD, Gevers D, Westcott SL. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. Plos One. 6: e27310. PMID 22194782 DOI: 10.1371/Journal.Pone.0027310 |
0.381 |
|
| 2011 |
Sczesnak A, Segata N, Qin X, Gevers D, Petrosino JF, Huttenhower C, Littman DR, Ivanov II. The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment. Cell Host & Microbe. 10: 260-72. PMID 21925113 DOI: 10.1016/J.Chom.2011.08.005 |
0.419 |
|
| 2011 |
Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C. Metagenomic biomarker discovery and explanation. Genome Biology. 12: R60. PMID 21702898 DOI: 10.7490/F1000Research.1089522.1 |
0.317 |
|
| 2011 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Gevers D, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823 |
0.566 |
|
| 2011 |
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ, Petrosino JF, Knight R, et al. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Research. 21: 494-504. PMID 21212162 DOI: 10.1101/Gr.112730.110 |
0.406 |
|
| 2011 |
Zella GC, Hait EJ, Glavan T, Gevers D, Ward DV, Kitts CL, Korzenik JR. Distinct microbiome in pouchitis compared to healthy pouches in ulcerative colitis and familial adenomatous polyposis. Inflammatory Bowel Diseases. 17: 1092-100. PMID 20845425 DOI: 10.1002/Ibd.21460 |
0.376 |
|
| 2011 |
Segata N, Abubucker S, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Waldron L, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, ... ... Gevers D, et al. Microbial community function and biomarker discovery in the human microbiome Genome Biology. 12: P47. DOI: 10.1186/Gb-2011-12-S1-P47 |
0.446 |
|
| 2010 |
Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, et al. A catalog of reference genomes from the human microbiome. Science (New York, N.Y.). 328: 994-9. PMID 20489017 DOI: 10.1126/Science.1183605 |
0.454 |
|
| 2010 |
Palmer KL, Carniol K, Manson JM, Heiman D, Shea T, Young S, Zeng Q, Gevers D, Feldgarden M, Birren B, Gilmore MS. High-quality draft genome sequences of 28 Enterococcus sp. isolates. Journal of Bacteriology. 192: 2469-70. PMID 20207762 DOI: 10.1128/Jb.00153-10 |
0.387 |
|
| 2010 |
Ciulla D, Giannoukos G, Earl A, Feldgarden M, Gevers D, Levin J, Livny J, Ward D, Gnirke A, Nusbaum C, Birren B. Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes Genome Biology. 11: 9. DOI: 10.1186/Gb-2010-11-S1-P9 |
0.356 |
|
| 2009 |
Vanlaere E, Baldwin A, Gevers D, Henry D, De Brandt E, LiPuma JJ, Mahenthiralingam E, Speert DP, Dowson C, Vandamme P. Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov. International Journal of Systematic and Evolutionary Microbiology. 59: 102-11. PMID 19126732 DOI: 10.1099/Ijs.0.001123-0 |
0.341 |
|
| 2009 |
Ouadghiri M, Vancanneyt M, Vandamme P, Naser S, Gevers D, Lefebvre K, Swings J, Amar M. Identification of lactic acid bacteria in Moroccan raw milk and traditionally fermented skimmed milk 'lben'. Journal of Applied Microbiology. 106: 486-95. PMID 19054226 DOI: 10.1111/J.1365-2672.2008.04016.X |
0.36 |
|
| 2008 |
Lee KB, De Backer P, Aono T, Liu CT, Suzuki S, Suzuki T, Kaneko T, Yamada M, Tabata S, Kupfer DM, Najar FZ, Wiley GB, Roe B, Binnewies TT, Ussery DW, ... ... Gevers D, et al. The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. Bmc Genomics. 9: 271. PMID 18522759 DOI: 10.1186/1471-2164-9-271 |
0.388 |
|
| 2008 |
Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, Polz MF. Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science (New York, N.Y.). 320: 1081-5. PMID 18497299 DOI: 10.1126/Science.1157890 |
0.32 |
|
| 2008 |
Hunt DE, Gevers D, Vahora NM, Polz MF. Conservation of the chitin utilization pathway in the Vibrionaceae. Applied and Environmental Microbiology. 74: 44-51. PMID 17933912 DOI: 10.1128/Aem.01412-07 |
0.38 |
|
| 2007 |
Naser SM, Dawyndt P, Hoste B, Gevers D, Vandemeulebroecke K, Cleenwerck I, Vancanneyt M, Swings J. Identification of lactobacilli by pheS and rpoA gene sequence analyses. International Journal of Systematic and Evolutionary Microbiology. 57: 2777-89. PMID 18048724 DOI: 10.1099/Ijs.0.64711-0 |
0.397 |
|
| 2007 |
Rademaker JL, Herbet H, Starrenburg MJ, Naser SM, Gevers D, Kelly WJ, Hugenholtz J, Swings J, van Hylckama Vlieg JE. Diversity analysis of dairy and nondairy Lactococcus lactis isolates, using a novel multilocus sequence analysis scheme and (GTG)5-PCR fingerprinting. Applied and Environmental Microbiology. 73: 7128-37. PMID 17890345 DOI: 10.1128/Aem.01017-07 |
0.342 |
|
| 2007 |
Heylen K, Vanparys B, Gevers D, Wittebolle L, Boon N, De Vos P. Nitric oxide reductase (norB) gene sequence analysis reveals discrepancies with nitrite reductase (nir) gene phylogeny in cultivated denitrifiers. Environmental Microbiology. 9: 1072-7. PMID 17359277 DOI: 10.1111/J.1462-2920.2006.01194.X |
0.352 |
|
| 2006 |
Gevers D, Dawyndt P, Vandamme P, Willems A, Vancanneyt M, Swings J, De Vos P. Stepping stones towards a new prokaryotic taxonomy. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 1911-6. PMID 17062410 DOI: 10.1098/Rstb.2006.1915 |
0.328 |
|
| 2006 |
Heylen K, Gevers D, Vanparys B, Wittebolle L, Geets J, Boon N, De Vos P. The incidence of nirS and nirK and their genetic heterogeneity in cultivated denitrifiers. Environmental Microbiology. 8: 2012-21. PMID 17014499 DOI: 10.1111/J.1462-2920.2006.01081.X |
0.396 |
|
| 2005 |
Thompson FL, Gevers D, Thompson CC, Dawyndt P, Naser S, Hoste B, Munn CB, Swings J. Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Applied and Environmental Microbiology. 71: 5107-15. PMID 16151093 DOI: 10.1128/Aem.71.9.5107-5115.2005 |
0.387 |
|
| 2005 |
Gevers D, Cohan FM, Lawrence JG, Spratt BG, Coenye T, Feil EJ, Stackebrandt E, Van de Peer Y, Vandamme P, Thompson FL, Swings J. Opinion: Re-evaluating prokaryotic species. Nature Reviews. Microbiology. 3: 733-9. PMID 16138101 DOI: 10.1038/Nrmicro1236 |
0.538 |
|
| 2005 |
Naser SM, Thompson FL, Hoste B, Gevers D, Dawyndt P, Vancanneyt M, Swings J. Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology (Reading, England). 151: 2141-50. PMID 16000705 DOI: 10.1099/Mic.0.27840-0 |
0.388 |
|
| 2005 |
Naser S, Thompson FL, Hoste B, Gevers D, Vandemeulebroecke K, Cleenwerck I, Thompson CC, Vancanneyt M, Swings J. Phylogeny and identification of Enterococci by atpA gene sequence analysis. Journal of Clinical Microbiology. 43: 2224-30. PMID 15872246 DOI: 10.1128/Jcm.43.5.2224-2230.2005 |
0.377 |
|
| 2005 |
Coenye T, Gevers D, Van de Peer Y, Vandamme P, Swings J. Towards a prokaryotic genomic taxonomy. Fems Microbiology Reviews. 29: 147-67. PMID 15808739 DOI: 10.1016/J.Femsre.2004.11.004 |
0.549 |
|
| 2004 |
De Clerck E, Gevers D, Sergeant K, Rodríguez-Díaz M, Herman L, Logan NA, Van Beeumen J, De Vos P. Genomic and phenotypic comparison of Bacillus fumarioli isolates from geothermal Antarctic soil and gelatine. Research in Microbiology. 155: 483-90. PMID 15249066 DOI: 10.1016/J.Resmic.2004.02.007 |
0.345 |
|
| 2004 |
Gevers D, Vandepoele K, Simillon C, Van de Peer Y. Gene duplication and biased functional retention of paralogs in bacterial genomes. Trends in Microbiology. 12: 148-54. PMID 15116722 DOI: 10.1016/J.Tim.2004.02.007 |
0.659 |
|
| 2003 |
Masco L, Huys G, Gevers D, Verbrugghen L, Swings J. Identification of Bifidobacterium species using rep-PCR fingerprinting. Systematic and Applied Microbiology. 26: 557-63. PMID 14666984 DOI: 10.1078/072320203770865864 |
0.331 |
|
| 2003 |
Gevers D, Masco L, Baert L, Huys G, Debevere J, Swings J. Prevalence and diversity of tetracycline resistant lactic acid bacteria and their tet genes along the process line of fermented dry sausages. Systematic and Applied Microbiology. 26: 277-83. PMID 12866855 DOI: 10.1078/072320203322346137 |
0.325 |
|
| 2003 |
Gevers D, Danielsen M, Huys G, Swings J. Molecular characterization of tet(M) genes in Lactobacillus isolates from different types of fermented dry sausage. Applied and Environmental Microbiology. 69: 1270-5. PMID 12571056 DOI: 10.1128/Aem.69.2.1270-1275.2003 |
0.339 |
|
| 2001 |
Gevers D, Huys G, Swings J. Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. Fems Microbiology Letters. 205: 31-6. PMID 11728712 DOI: 10.1111/J.1574-6968.2001.Tb10921.X |
0.324 |
|
| 2000 |
Gevers D, Huys G, Devlieghere F, Uyttendaele M, Debevere J, Swings J. Isolation and identification of tetracycline resistant lactic acid bacteria from pre-packed sliced meat products. Systematic and Applied Microbiology. 23: 279-84. PMID 10930081 DOI: 10.1016/S0723-2020(00)80015-6 |
0.305 |
|
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