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Carin K. Vanderpool, Ph.D. - Publications

Affiliations: 
2003 University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Microbiology Biology, Genetics
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55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ragunathan PT, Ng Kwan Lim E, Ma X, Massé E, Vanderpool CK. Mechanisms of Regulation of Cryptic Prophage-Encoded Gene Products in Escherichia coli. Journal of Bacteriology. e0012923. PMID 37439671 DOI: 10.1128/jb.00129-23  0.44
2022 Abdulla SZ, Kim K, Azam MS, Golubeva YA, Cakar F, Slauch JM, Vanderpool CK. Small RNAs Activate Salmonella Pathogenicity Island 1 by Modulating mRNA Stability through the mRNA 3' Untranslated Region. Journal of Bacteriology. e0033322. PMID 36472436 DOI: 10.1128/jb.00333-22  0.462
2021 Lalaouna D, Prévost K, Park S, Chénard T, Bouchard MP, Caron MP, Vanderpool CK, Fei J, Massé E. Binding of the RNA Chaperone Hfq on Target mRNAs Promotes the Small RNA RyhB-Induced Degradation in . Non-Coding Rna. 7. PMID 34698252 DOI: 10.3390/ncrna7040064  0.398
2021 Cakar F, Golubeva YA, Vanderpool CK, Slauch JM. The sRNA MicC downregulates translation to control the SPI1 T3SS in serovar Typhimurium. Journal of Bacteriology. JB0037821. PMID 34694902 DOI: 10.1128/JB.00378-21  0.392
2021 Reyer MA, Chennakesavalu S, Heideman EM, Ma X, Bujnowska M, Hong L, Dinner AR, Vanderpool CK, Fei J. Kinetic modeling reveals additional regulation at co-transcriptional level by post-transcriptional sRNA regulators. Cell Reports. 36: 109764. PMID 34592145 DOI: 10.1016/j.celrep.2021.109764  0.405
2021 Adams AND, Azam MS, Costliow ZA, Ma X, Degnan PH, Vanderpool CK. A Novel Family of RNA-Binding Proteins Regulate Polysaccharide Metabolism in . Journal of Bacteriology. JB0021721. PMID 34251866 DOI: 10.1128/JB.00217-21  0.409
2020 Bianchi DM, Brier TA, Poddar A, Azam MS, Vanderpool CK, Ha T, Luthey-Schulten Z. Stochastic Analysis Demonstrates the Dual Role of Hfq in Chaperoning Sugar Shock Response. Frontiers in Molecular Biosciences. 7: 593826. PMID 33425989 DOI: 10.3389/fmolb.2020.593826  0.409
2020 Azam MS, Vanderpool CK. Translation inhibition from a distance: the small RNA SgrS silences a ribosomal protein S1-dependent enhancer. Molecular Microbiology. PMID 32291821 DOI: 10.1111/Mmi.14514  0.472
2019 Ragunathan PT, Vanderpool CK. Cryptic prophage-encoded small protein protects from phage infection by inhibiting inner membrane receptor proteins. Journal of Bacteriology. PMID 31527115 DOI: 10.1128/Jb.00475-19  0.417
2019 Bobrovskyy M, Azam MS, Frandsen JK, Zhang J, Poddar A, Ma X, Henkin TM, Ha T, Vanderpool CK. Determinants of target prioritization and regulatory hierarchy for the bacterial small RNA SgrS. Molecular Microbiology. PMID 31340077 DOI: 10.1111/Mmi.14355  0.49
2019 Bianco CM, Fröhlich KS, Vanderpool CK. Bacterial Cyclopropane Fatty Acid Synthase mRNA is targeted by activating and repressing small RNAs. Journal of Bacteriology. PMID 31308070 DOI: 10.1128/Jb.00461-19  0.467
2019 Kim K, Palmer AD, Vanderpool CK, Slauch JM. The sRNA PinT contributes to PhoP-mediated regulation of the SPI1 T3SS in serovar Typhimurium. Journal of Bacteriology. PMID 31262841 DOI: 10.1128/Jb.00312-19  0.478
2019 King AM, Vanderpool CK, Degnan PH. sRNA Target Prediction Organizing Tool (SPOT) Integrates Computational and Experimental Data To Facilitate Functional Characterization of Bacterial Small RNAs. Msphere. 4. PMID 30700509 DOI: 10.1128/mSphere.00561-18  0.373
2019 Brier TA, Bianchi D, Poddar A, Azam MS, Vanderpool CK, Ha T, Luthey-Schulten Z. Modeling the Impact of Point Mutations on the Regulatory Potency of the Small RNA SgrS Biophysical Journal. 116: 423a. DOI: 10.1016/J.Bpj.2018.11.2279  0.347
2018 Kim K, Golubeva YA, Vanderpool CK, Slauch JM. Oxygen-Dependent Regulation of SPI1 Type Three Secretion System by Small RNAs in Salmonella enterica serovar Typhimurium. Molecular Microbiology. PMID 30484918 DOI: 10.1111/Mmi.14174  0.503
2018 Raina M, King A, Bianco C, Vanderpool CK. Dual-Function RNAs. Microbiology Spectrum. 6. PMID 30191807 DOI: 10.1128/Microbiolspec.Rwr-0032-2018  0.445
2017 Azam MS, Vanderpool CK. Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism. Nucleic Acids Research. PMID 29294046 DOI: 10.1093/Nar/Gkx1286  0.488
2017 Lloyd CR, Park S, Fei J, Vanderpool CK. The small protein SgrT controls transport activity of the glucose-specific phosphotransferase system. Journal of Bacteriology. PMID 28289085 DOI: 10.1128/Jb.00869-16  0.469
2016 Balasubramanian D, Ragunathan PT, Fei J, Vanderpool CK. A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli. Msystems. 1. PMID 27822514 DOI: 10.1128/mSystems.00021-15  0.444
2016 Whitaker RJ, Vanderpool CK. CRISPR-Cas Gatekeeper: Slow on the Uptake but Gets the Job Done. Cell Host & Microbe. 19: 135-7. PMID 26867170 DOI: 10.1016/J.Chom.2016.01.015  0.325
2016 Bobrovskyy M, Vanderpool CK. Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress. Molecular Microbiology. 99: 254-73. PMID 26411266 DOI: 10.1111/Mmi.13230  0.53
2015 Bobrovskyy M, Vanderpool CK, Richards GR. Small RNAs Regulate Primary and Secondary Metabolism in Gram-negative Bacteria. Microbiology Spectrum. 3. PMID 26185078 DOI: 10.1128/Microbiolspec.Mbp-0009-2014  0.498
2015 Papenfort K, Vanderpool CK. Target activation by regulatory RNAs in bacteria. Fems Microbiology Reviews. 39: 362-78. PMID 25934124 DOI: 10.1093/Femsre/Fuv016  0.514
2015 Azam MS, Vanderpool CK. Talk among yourselves: RNA sponges mediate cross talk between functionally related messenger RNAs. The Embo Journal. 34: 1436-8. PMID 25916829 DOI: 10.15252/Embj.201591492  0.434
2015 Fei J, Singh D, Zhang Q, Park S, Balasubramanian D, Golding I, Vanderpool CK, Ha T. RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA. Science (New York, N.Y.). 347: 1371-4. PMID 25792329 DOI: 10.1126/Science.1258849  0.43
2014 Bobrovskyy M, Vanderpool CK. The small RNA SgrS: roles in metabolism and pathogenesis of enteric bacteria. Frontiers in Cellular and Infection Microbiology. 4: 61. PMID 24847473 DOI: 10.3389/Fcimb.2014.00061  0.511
2014 Fei J, Singh D, Zhang Q, Park S, Golding I, Vanderpool CK, Ha T. Watching Gene Regulation by Small RNA in Bacteria with Super-Resolution Imaging Biophysical Journal. 106: 434a. DOI: 10.1016/J.Bpj.2013.11.2447  0.497
2013 Bobrovskyy M, Vanderpool CK. Regulation of bacterial metabolism by small RNAs using diverse mechanisms. Annual Review of Genetics. 47: 209-32. PMID 24016191 DOI: 10.1146/Annurev-Genet-111212-133445  0.438
2013 Richards GR, Patel MV, Lloyd CR, Vanderpool CK. Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in Escherichia coli. Journal of Bacteriology. 195: 4816-25. PMID 23995640 DOI: 10.1128/Jb.00705-13  0.375
2013 Balasubramanian D, Vanderpool CK. Deciphering the interplay between two independent functions of the small RNA regulator SgrS in Salmonella. Journal of Bacteriology. 195: 4620-30. PMID 23935052 DOI: 10.1128/Jb.00586-13  0.522
2013 Sun Y, Vanderpool CK. Physiological consequences of multiple-target regulation by the small RNA SgrS in Escherichia coli. Journal of Bacteriology. 195: 4804-15. PMID 23873911 DOI: 10.1128/Jb.00722-13  0.465
2013 McClure R, Balasubramanian D, Sun Y, Bobrovskyy M, Sumby P, Genco CA, Vanderpool CK, Tjaden B. Computational analysis of bacterial RNA-Seq data. Nucleic Acids Research. 41: e140. PMID 23716638 DOI: 10.1093/Nar/Gkt444  0.426
2013 Papenfort K, Sun Y, Miyakoshi M, Vanderpool CK, Vogel J. Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell. 153: 426-37. PMID 23582330 DOI: 10.1016/J.Cell.2013.03.003  0.487
2013 Balasubramanian D, Vanderpool CK. New developments in post-transcriptional regulation of operons by small RNAs. Rna Biology. 10: 337-41. PMID 23392245 DOI: 10.4161/Rna.23696  0.522
2012 Rice JB, Balasubramanian D, Vanderpool CK. Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA. Proceedings of the National Academy of Sciences of the United States of America. 109: E2691-8. PMID 22988087 DOI: 10.1073/Pnas.1207927109  0.454
2012 Richards GR, Vanderpool CK. Induction of the Pho regulon suppresses the growth defect of an Escherichia coli sgrS mutant, connecting phosphate metabolism to the glucose-phosphate stress response. Journal of Bacteriology. 194: 2520-30. PMID 22427626 DOI: 10.1128/Jb.00009-12  0.455
2011 Richards GR, Vanderpool CK. Molecular call and response: the physiology of bacterial small RNAs. Biochimica Et Biophysica Acta. 1809: 525-31. PMID 21843668 DOI: 10.1016/J.Bbagrm.2011.07.013  0.513
2011 Vanderpool CK, Balasubramanian D, Lloyd CR. Dual-function RNA regulators in bacteria. Biochimie. 93: 1943-9. PMID 21816203 DOI: 10.1016/J.Biochi.2011.07.016  0.479
2011 Vanderpool CK. Combined experimental and computational strategies define an expansive regulon for GcvB small RNA. Molecular Microbiology. 81: 1129-32. PMID 21815948 DOI: 10.1111/J.1365-2958.2011.07780.X  0.394
2011 Rice JB, Vanderpool CK. The small RNA SgrS controls sugar-phosphate accumulation by regulating multiple PTS genes. Nucleic Acids Research. 39: 3806-19. PMID 21245045 DOI: 10.1093/Nar/Gkq1219  0.528
2011 Sun Y, Vanderpool CK. Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress. Journal of Bacteriology. 193: 143-53. PMID 20971900 DOI: 10.1128/Jb.01008-10  0.422
2009 Wadler CS, Vanderpool CK. Characterization of homologs of the small RNA SgrS reveals diversity in function. Nucleic Acids Research. 37: 5477-85. PMID 19620214 DOI: 10.1093/Nar/Gkp591  0.475
2009 Horler RS, Vanderpool CK. Homologs of the small RNA SgrS are broadly distributed in enteric bacteria but have diverged in size and sequence. Nucleic Acids Research. 37: 5465-76. PMID 19531735 DOI: 10.1093/Nar/Gkp501  0.476
2007 Wadler CS, Vanderpool CK. A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide. Proceedings of the National Academy of Sciences of the United States of America. 104: 20454-9. PMID 18042713 DOI: 10.1073/Pnas.0708102104  0.52
2007 Vanderpool CK. Physiological consequences of small RNA-mediated regulation of glucose-phosphate stress. Current Opinion in Microbiology. 10: 146-51. PMID 17383224 DOI: 10.1016/J.Mib.2007.03.011  0.512
2007 Vanderpool CK, Gottesman S. The novel transcription factor SgrR coordinates the response to glucose-phosphate stress. Journal of Bacteriology. 189: 2238-48. PMID 17209026 DOI: 10.1128/Jb.01689-06  0.448
2006 Gottesman S, McCullen CA, Guillier M, Vanderpool CK, Majdalani N, Benhammou J, Thompson KM, FitzGerald PC, Sowa NA, FitzGerald DJ. Small RNA regulators and the bacterial response to stress. Cold Spring Harbor Symposia On Quantitative Biology. 71: 1-11. PMID 17381274 DOI: 10.1101/Sqb.2006.71.016  0.499
2006 Brickman TJ, Vanderpool CK, Armstrong SK. Heme transport contributes to in vivo fitness of Bordetella pertussis during primary infection in mice. Infection and Immunity. 74: 1741-4. PMID 16495546 DOI: 10.1128/Iai.74.3.1741-1744.2006  0.642
2005 Massé E, Vanderpool CK, Gottesman S. Effect of RyhB small RNA on global iron use in Escherichia coli. Journal of Bacteriology. 187: 6962-71. PMID 16199566 DOI: 10.1128/Jb.187.20.6962-6971.2005  0.524
2005 Majdalani N, Vanderpool CK, Gottesman S. Bacterial small RNA regulators. Critical Reviews in Biochemistry and Molecular Biology. 40: 93-113. PMID 15814430 DOI: 10.1080/10409230590918702  0.493
2005 Vanderpool CK, Gottesman S. Noncoding RNAs at the membrane. Nature Structural & Molecular Biology. 12: 285-6. PMID 15809646 DOI: 10.1038/Nsmb0405-285  0.41
2004 Vanderpool CK, Gottesman S. Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system. Molecular Microbiology. 54: 1076-89. PMID 15522088 DOI: 10.1111/J.1365-2958.2004.04348.X  0.479
2004 Vanderpool CK, Armstrong SK. Integration of environmental signals controls expression of Bordetella heme utilization genes. Journal of Bacteriology. 186: 938-48. PMID 14761988 DOI: 10.1128/Jb.186.4.938-948.2004  0.674
2003 Vanderpool CK, Armstrong SK. Heme-responsive transcriptional activation of Bordetella bhu genes. Journal of Bacteriology. 185: 909-17. PMID 12533466 DOI: 10.1128/Jb.185.3.909-917.2003  0.682
2001 Vanderpool CK, Armstrong SK. The Bordetella bhu locus is required for heme iron utilization. Journal of Bacteriology. 183: 4278-87. PMID 11418569 DOI: 10.1128/Jb.183.14.4278-4287.2001  0.652
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