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Michael J. Yonkunas, Ph.D. - Publications

Affiliations: 
2010 Carnegie Mellon University, Pittsburgh, PA 
Area:
General Biophysics
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14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Yonkunas MJ, Baird NJ. A highly ordered, non-protective MALAT1 ENE structure is adopted prior to triplex formation. Rna (New York, N.Y.). PMID 31113838 DOI: 10.1261/Rna.069906.118  0.356
2017 Yonkunas M, Buddhadev M, Flores Canales JC, Kurnikova MG. Configurational Preference of the Glutamate Receptor Ligand Binding Domain Dimers. Biophysical Journal. 112: 2291-2300. PMID 28591602 DOI: 10.1016/J.Bpj.2017.04.042  0.737
2017 Mesbahi-Vasey S, Veras L, Yonkunas M, Johnson JW, Kurnikova MG. All atom NMDA receptor transmembrane domain model development and simulations in lipid bilayers and water. Plos One. 12: e0177686. PMID 28582391 DOI: 10.1371/Journal.Pone.0177686  0.715
2015 Yonkunas M, Kurnikova M. The Hydrophobic Effect Contributes to the Closed State of a Simplified Ion Channel through a Conserved Hydrophobic Patch at the Pore-Helix Crossing. Frontiers in Pharmacology. 6: 284. PMID 26640439 DOI: 10.3389/Fphar.2015.00284  0.69
2014 Liu Z, Szarecka A, Yonkunas M, Speranskiy K, Kurnikova M, Cascio M. Crosslinking constraints and computational models as complementary tools in modeling the extracellular domain of the glycine receptor. Plos One. 9: e102571. PMID 25025226 DOI: 10.1371/Journal.Pone.0102571  0.639
2014 Yonkunas M, Buddhadev M, Kurnikova M. Characterizing the Energetic States of a Glutamate Receptor using Umbrella Sampling and Microsecond Molecular Dynamics Simulations Biophysical Journal. 106: 152a. DOI: 10.1016/J.Bpj.2013.11.873  0.726
2013 Abroshan H, Yonkunas M, Johnson JW, Kurnikova M. Glutamate Receptor Model and Atomistic Simulations; AMPA and NMDA Biophysical Journal. 104: 271a. DOI: 10.1016/J.Bpj.2012.11.1522  0.726
2011 Yonkunas M, Kurnikova M. Characterizing the energetic states of the GluR2 ligand binding domain core-dimer. Biophysical Journal. 100: L5-7. PMID 21244821 DOI: 10.1016/J.Bpj.2010.10.048  0.714
2011 Yonkunas MJ, Kurnikova M. A Hydrophobic Bundle Crossing Found in Glutamate Receptor and K+ channel Pore Helices Dominates the Conformational Free Energy Landscape Biophysical Journal. 100: 24a. DOI: 10.1016/J.Bpj.2010.12.339  0.666
2010 Yonkunas MJ, Kurnikova M. Theoretical Investigation of Structure and Gating Mechanisms in Glutamate Receptor Ion Channels Biophysical Journal. 98: 524a. DOI: 10.1016/J.Bpj.2009.12.2849  0.714
2008 Mamonova T, Yonkunas MJ, Kurnikova MG. Energetics of the cleft closing transition and the role of electrostatic interactions in conformational rearrangements of the glutamate receptor ligand binding domain. Biochemistry. 47: 11077-85. PMID 18823129 DOI: 10.1016/J.Bpj.2008.12.2534  0.711
2006 Jun S, Becker JS, Yonkunas M, Coalson R, Saxena S. Unfolding of alanine-based peptides using electron spin resonance distance measurements. Biochemistry. 45: 11666-73. PMID 16981726 DOI: 10.1021/Bi061195B  0.516
2005 Li L, Geng X, Yonkunas M, Su A, Densmore E, Tang P, Drain P. Ligand-dependent linkage of the ATP site to inhibition gate closure in the KATP channel. The Journal of General Physiology. 126: 285-99. PMID 16129775 DOI: 10.1085/Jgp.200509289  0.447
2005 Yonkunas MJ, Xu Y, Tang P. Anesthetic interaction with ketosteroid isomerase: insights from molecular dynamics simulations. Biophysical Journal. 89: 2350-6. PMID 16040747 DOI: 10.1529/Biophysj.105.063396  0.368
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