| Year |
Citation |
Score |
| 2024 |
Dussarrat T, Nilo-Poyanco R, Moyano TC, Prigent S, Jeffers TL, Díaz FP, Decros G, Audi L, Sondervan VM, Shen B, Araus V, Rolin D, Shasha D, Coruzzi GM, Gibon Y, et al. Phylogenetically diverse wild plant species use common biochemical strategies to thrive in the Atacama Desert. Journal of Experimental Botany. PMID 38477678 DOI: 10.1093/jxb/erae117 |
0.787 |
|
| 2024 |
Shanks CM, Rothkegel K, Brooks MD, Cheng CY, Alvarez JM, Ruffel S, Krouk G, Gutiérrez RA, Coruzzi GM. Nitrogen sensing and regulatory networks: It's about time and space. The Plant Cell. PMID 38366121 DOI: 10.1093/plcell/koae038 |
0.794 |
|
| 2023 |
Pereyra ME, Costigliolo Rojas C, Jarrell AF, Hovland AS, Snipes SA, Nagpal P, Alabadí D, Blázquez MA, Gutiérrez RA, Reed JW, Gray WM, Casal JJ. PIF4 enhances the expression of genes to promote growth in response to nitrate. Proceedings of the National Academy of Sciences of the United States of America. 120: e2304513120. PMID 37725643 DOI: 10.1073/pnas.2304513120 |
0.365 |
|
| 2023 |
Chaput V, Li J, Séré D, Tillard P, Fizames C, Moyano T, Zuo K, Martin A, Gutiérrez RA, Gojon A, Lejay L. Characterisation of the signalling pathways involved in the repression of root nitrate uptake by nitrate in Arabidopsis thaliana. Journal of Experimental Botany. PMID 37185665 DOI: 10.1093/jxb/erad149 |
0.751 |
|
| 2023 |
Pacheco JM, Song L, Kuběnová L, Ovečka M, Berdion Gabarain V, Peralta JM, Lehuedé TU, Ibeas MA, Ricardi MM, Zhu S, Shen Y, Schepetilnikov M, Ryabova LA, Alvarez JM, Gutierrez RA, et al. Cell surface receptor kinase FERONIA linked to nutrient sensor TORC signaling controls root hair growth at low temperature linked to low nitrate in Arabidopsis thaliana. The New Phytologist. PMID 36716782 DOI: 10.1111/nph.18723 |
0.724 |
|
| 2022 |
Moraga C, Sanchez E, Ferrarini MG, Gutierrez RA, Vidal EA, Sagot MF. BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data. Gigascience. 11. PMID 36283679 DOI: 10.1093/gigascience/giac093 |
0.7 |
|
| 2022 |
Lamig L, Moreno S, Álvarez JM, Gutiérrez RA. Molecular mechanisms underlying nitrate responses in plants. Current Biology : Cb. 32: R433-R439. PMID 35537398 DOI: 10.1016/j.cub.2022.03.022 |
0.786 |
|
| 2022 |
Dussarrat T, Prigent S, Latorre C, Bernillon S, Flandin A, Díaz FP, Cassan C, Van Delft P, Jacob D, Varala K, Joubes J, Gibon Y, Rolin D, Gutiérrez RA, Pétriacq P. Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience. The New Phytologist. PMID 35288949 DOI: 10.1111/nph.18095 |
0.758 |
|
| 2022 |
Contreras-López O, Vidal EA, Riveras E, Alvarez JM, Moyano TC, Sparks EE, Medina J, Pasquino A, Benfey PN, Coruzzi GM, Gutiérrez RA. Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35046022 DOI: 10.1073/pnas.2107879119 |
0.834 |
|
| 2021 |
Eshel G, Araus V, Undurraga S, Soto DC, Moraga C, Montecinos A, Moyano T, Maldonado J, Díaz FP, Varala K, Nelson CW, Contreras-López O, Pal-Gabor H, Kraiser T, Carrasco-Puga G, et al. Plant ecological genomics at the limits of life in the Atacama Desert. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34725254 DOI: 10.1073/pnas.2101177118 |
0.807 |
|
| 2021 |
Vega A, Fredes I, O'Brien J, Shen Z, Ötvös K, Abualia R, Benkova E, Briggs SP, Gutiérrez RA. Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture. Embo Reports. e51813. PMID 34357701 DOI: 10.15252/embr.202051813 |
0.813 |
|
| 2021 |
Moyano TC, Gutiérrez RA, Alvarez JM. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks. Methods in Molecular Biology (Clifton, N.J.). 2328: 25-46. PMID 34251618 DOI: 10.1007/978-1-0716-1534-8_3 |
0.723 |
|
| 2021 |
Ruffel S, Chaput V, Przybyla-Toscano J, Fayos I, Ibarra C, Moyano T, Fizames C, Tillard P, O'Brien JA, Gutiérrez RA, Gojon A, Lejay L. Genome-wide analysis in response to nitrogen and carbon identifies regulators for root AtNRT2 transporters. Plant Physiology. PMID 33582801 DOI: 10.1093/plphys/kiab047 |
0.832 |
|
| 2021 |
Ötvös K, Marconi M, Vega A, O'Brien J, Johnson A, Abualia R, Antonielli L, Montesinos JC, Zhang Y, Tan S, Cuesta C, Artner C, Bouguyon E, Gojon A, Friml J, et al. Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport. The Embo Journal. e106862. PMID 33399250 DOI: 10.15252/embj.2020106862 |
0.798 |
|
| 2020 |
Herrera-Vásquez A, Fonseca A, Ugalde JM, Lamig L, Seguel A, Moyano TC, Gutiérrez RA, Salinas P, Vidal EA, Holuigue L. TGA class II transcription factors are essential to restrict oxidative stress in response to UV-B stress in Arabidopsis. Journal of Experimental Botany. PMID 33188435 DOI: 10.1093/jxb/eraa534 |
0.724 |
|
| 2020 |
Zúñiga LM, Andrade J, Fábrega-Guerén F, Orihuela PA, Velasquez EV, Vidal EA, Gutiérrez RA, Morales P, Gómez-Silva B, Croxatto HB. Mating induces early transcriptional response in the rat endosalpinx: The role of TNF and RA. Reproduction (Cambridge, England). PMID 33112288 DOI: 10.1530/REP-20-0190 |
0.701 |
|
| 2020 |
Swift J, Alvarez JM, Araus V, Gutiérrez RA, Coruzzi GM. Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten kinetics underlie plant growth rates. Proceedings of the National Academy of Sciences of the United States of America. PMID 32414922 DOI: 10.1073/Pnas.1918619117 |
0.789 |
|
| 2020 |
Moreno S, Canales J, Hong L, Robinson D, Roeder AHK, Gutiérrez RA. Nitrate Defines Shoot Size through Compensatory Roles for Endoreplication and Cell Division in Arabidopsis thaliana. Current Biology : Cb. PMID 32302589 DOI: 10.1016/J.Cub.2020.03.036 |
0.741 |
|
| 2020 |
Vidal EA, Alvarez JM, Araus V, Riveras E, Brooks M, Krouk G, Ruffel S, Lejay L, Crawford N, Coruzzi GM, Gutiérrez RA. Nitrate 2020: Thirty years from transport to signaling networks. The Plant Cell. PMID 32169959 DOI: 10.1105/Tpc.19.00748 |
0.789 |
|
| 2019 |
Cruz N, Méndez T, Ramos P, Urbina D, Vega A, Gutiérrez RA, Moya-León MA, Herrera R. Induction of PrMADS10 on the lower side of bent pine tree stems: potential role in modifying plant cell wall properties and wood anatomy. Scientific Reports. 9: 18981. PMID 31831838 DOI: 10.1038/s41598-019-55276-7 |
0.354 |
|
| 2019 |
Naulin PA, Armijo G, Vega A, Tamayo KP, Gras DE, de la Cruz J, Gutiérrez RA. Nitrate Induction of Primary Root Growth Requires Cytokinin Signaling in Arabidopsis thaliana. Plant & Cell Physiology. PMID 31730198 DOI: 10.1093/pcp/pcz199 |
0.799 |
|
| 2019 |
Vega A, O'Brien JA, Gutiérrez RA. Nitrate and hormonal signaling crosstalk for plant growth and development. Current Opinion in Plant Biology. 52: 155-163. PMID 31726384 DOI: 10.1016/j.pbi.2019.10.001 |
0.796 |
|
| 2019 |
Alvarez JM, Moyano TC, Zhang T, Gras DE, Herrera FJ, Araus V, O'Brien JA, Carrillo L, Medina J, Vicente-Carbajosa J, Jiang J, Gutiérrez RA. Local changes in chromatin accessibility and transcriptional networks underlying the nitrate response in Arabidopsis roots. Molecular Plant. PMID 31526863 DOI: 10.1016/J.Molp.2019.09.002 |
0.806 |
|
| 2019 |
Falter-Braun P, Brady S, Gutiérrez RA, Coruzzi GM, Krouk G. iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community. Molecular Plant. 12: 727-730. PMID 31125688 DOI: 10.1016/J.Molp.2019.05.005 |
0.811 |
|
| 2019 |
Brooks MD, Cirrone J, Pasquino AV, Alvarez JM, Swift J, Mittal S, Juang CL, Varala K, Gutiérrez RA, Krouk G, Shasha D, Coruzzi GM. Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions. Nature Communications. 10: 1569. PMID 30952851 DOI: 10.1038/S41467-019-09522-1 |
0.794 |
|
| 2019 |
Vidal EA, Moyano TC, Bustos BI, Pérez-Palma E, Moraga C, Riveras E, Montecinos A, Azócar L, Soto DC, Vidal M, Di Genova A, Puschel K, Nürnberg P, Buch S, Hampe J, et al. Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans. Scientific Reports. 9: 2132. PMID 30765821 DOI: 10.1038/S41598-019-39391-Z |
0.668 |
|
| 2018 |
Fredes I, Moreno S, Díaz FP, Gutiérrez RA. Nitrate signaling and the control of Arabidopsis growth and development. Current Opinion in Plant Biology. 47: 112-118. PMID 30496968 DOI: 10.1016/j.pbi.2018.10.004 |
0.356 |
|
| 2018 |
Wood JR, Díaz FP, Latorre C, Wilmshurst JM, Burge OR, Gutiérrez RA. Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile. Scientific Reports. 8: 17208. PMID 30464240 DOI: 10.1038/s41598-018-35299-2 |
0.301 |
|
| 2018 |
Muñoz-Llanos M, García-Pérez MA, Xu X, Tejos-Bravo M, Vidal EA, Moyano TC, Gutiérrez RA, Aguayo FI, Pacheco A, García-Rojo G, Aliaga E, Rojas PS, Cidlowski JA, Fiedler JL. MicroRNA Profiling and Bioinformatics Target Analysis in Dorsal Hippocampus of Chronically Stressed Rats: Relevance to Depression Pathophysiology. Frontiers in Molecular Neuroscience. 11: 251. PMID 30127715 DOI: 10.3389/Fnmol.2018.00251 |
0.664 |
|
| 2018 |
Contreras-López O, Moyano TC, Soto DC, Gutiérrez RA. Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data. Methods in Molecular Biology (Clifton, N.J.). 1761: 275-301. PMID 29525965 DOI: 10.1007/978-1-4939-7747-5_21 |
0.312 |
|
| 2017 |
Gras DE, Vidal EA, Undurraga SF, Riveras E, Moreno S, Dominguez-Figueroa J, Alabadi D, Blázquez M, Medina J, Gutiérrez RA. SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana. Journal of Experimental Botany. PMID 29309650 DOI: 10.1093/Jxb/Erx423 |
0.833 |
|
| 2017 |
Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, ... ... Gutierrez R, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490 |
0.823 |
|
| 2017 |
Canales J, Contreras-López O, Álvarez JM, Gutiérrez RA. Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. PMID 28771873 DOI: 10.1111/Tpj.13656 |
0.834 |
|
| 2017 |
Undurraga SF, Ibarra-Henríquez C, Fredes I, Álvarez JM, Gutiérrez RA. Nitrate signaling and early responses in Arabidopsis roots. Journal of Experimental Botany. PMID 28369507 DOI: 10.1093/Jxb/Erx041 |
0.758 |
|
| 2016 |
Puelma T, Araus V, Canales J, Vidal EA, Cabello JM, Soto A, Gutiérrez RA. GENIUS: web server to predict local gene networks and key genes for biological functions. Bioinformatics (Oxford, England). PMID 27993775 DOI: 10.1093/Bioinformatics/Btw702 |
0.771 |
|
| 2016 |
Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SC, Chen H, Ramachandran N, Altmann S, et al. Mapping transcription factor interactome networks using HaloTag protein arrays. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357687 DOI: 10.1073/Pnas.1603229113 |
0.732 |
|
| 2016 |
O'Brien JA, Vega A, Bouguyon E, Krouk G, Gojon A, Coruzzi G, Gutiérrez RA. Nitrate transport, sensing and responses in plants. Molecular Plant. PMID 27212387 DOI: 10.1016/J.Molp.2016.05.004 |
0.845 |
|
| 2016 |
Araus V, Vidal EA, Puelma T, Alamos S, Mieulet D, Guiderdoni E, Gutiérrez RA. Members of BTB gene family regulate negatively nitrate uptake and nitrogen use efficiency in Arabidopsis thaliana and Oryza sativa. Plant Physiology. PMID 27208309 DOI: 10.1104/Pp.15.01731 |
0.828 |
|
| 2016 |
Pérez-Delgado CM, Moyano TC, García-Calderón M, Canales J, Gutiérrez RA, Márquez AJ, Betti M. Use of transcriptomics and co-expression networks to analyze the interconnections between nitrogen assimilation and photorespiratory metabolism. Journal of Experimental Botany. PMID 27117340 DOI: 10.1093/Jxb/Erw170 |
0.795 |
|
| 2015 |
Vega A, Canessa P, Hoppe G, Retamal I, Moyano TC, Canales J, Gutiérrez RA, Rubilar J. Transcriptome analysis reveals regulatory networks underlying differential susceptibility to Botrytis cinerea in response to nitrogen availability in Solanum lycopersicum. Frontiers in Plant Science. 6: 911. PMID 26583019 DOI: 10.3389/Fpls.2015.00911 |
0.803 |
|
| 2015 |
Riveras E, Alvarez JM, Vidal EA, Oses C, Vega A, Gutiérrez RA. The Calcium Ion Is a Second Messenger in the Nitrate Signaling Pathway of Arabidopsis. Plant Physiology. 169: 1397-404. PMID 26304850 DOI: 10.1104/Pp.15.00961 |
0.813 |
|
| 2015 |
Vidal EA, Álvarez JM, Moyano TC, Gutiérrez RA. Transcriptional networks in the nitrate response of Arabidopsis thaliana. Current Opinion in Plant Biology. 27: 125-32. PMID 26247122 DOI: 10.1016/J.Pbi.2015.06.010 |
0.87 |
|
| 2015 |
Moyano TC, Vidal EA, Contreras-López O, Gutiérrez RA. Constructing simple biological networks for understanding complex high-throughput data in plants. Methods in Molecular Biology (Clifton, N.J.). 1284: 503-26. PMID 25757789 DOI: 10.1007/978-1-4939-2444-8_25 |
0.733 |
|
| 2014 |
Vidal EA, Moyano TC, Canales J, Gutiérrez RA. Nitrogen control of developmental phase transitions in Arabidopsis thaliana. Journal of Experimental Botany. 65: 5611-8. PMID 25129132 DOI: 10.1093/Jxb/Eru326 |
0.845 |
|
| 2014 |
Alvarez JM, Riveras E, Vidal EA, Gras DE, Contreras-López O, Tamayo KP, Aceituno F, Gómez I, Ruffel S, Lejay L, Jordana X, Gutiérrez RA. Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots. The Plant Journal : For Cell and Molecular Biology. 80: 1-13. PMID 25039575 DOI: 10.1111/Tpj.12618 |
0.823 |
|
| 2014 |
Canales J, Moyano TC, Villarroel E, Gutiérrez RA. Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments. Frontiers in Plant Science. 5: 22. PMID 24570678 DOI: 10.3389/Fpls.2014.00022 |
0.805 |
|
| 2011 |
Fuentes D, Meneses M, Nunes-Nesi A, Araújo WL, Tapia R, Gómez I, Holuigue L, Gutiérrez RA, Fernie AR, Jordana X. A deficiency in the flavoprotein of Arabidopsis mitochondrial complex II results in elevated photosynthesis and better growth in nitrogen-limiting conditions. Plant Physiology. 157: 1114-27. PMID 21921116 DOI: 10.1104/Pp.111.183939 |
0.381 |
|
| 2010 |
Vidal EA, Tamayo KP, Gutierrez RA. Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 683-93. PMID 20890965 DOI: 10.1002/wsbm.87 |
0.793 |
|
| 2010 |
Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutiérrez RA. VirtualPlant: a software platform to support systems biology research. Plant Physiology. 152: 500-15. PMID 20007449 DOI: 10.1104/Pp.109.147025 |
0.802 |
|
| 2008 |
Bender J, Benfey P, Bergmann D, Borevitz J, Coruzzi G, Dangl J, Dean C, Ecker J, Estelle M, Glazebrook J, Grant S, Guerinot ML, Gutierrez R, Long J, Nordborg M, et al. 2020 vision for biology: the role of plants in addressing grand challenges in biology. Molecular Plant. 1: 561-3. PMID 19825561 DOI: 10.1093/Mp/Ssn040 |
0.813 |
|
| 2008 |
Gifford ML, Dean A, Gutierrez RA, Coruzzi GM, Birnbaum KD. Cell-specific nitrogen responses mediate developmental plasticity. Proceedings of the National Academy of Sciences of the United States of America. 105: 803-8. PMID 18180456 DOI: 10.1073/Pnas.0709559105 |
0.807 |
|
| 2007 |
Poultney CS, Gutiérrez RA, Katari MS, Gifford ML, Paley WB, Coruzzi GM, Shasha DE. Sungear: interactive visualization and functional analysis of genomic datasets. Bioinformatics (Oxford, England). 23: 259-61. PMID 17018536 DOI: 10.1093/Bioinformatics/Btl496 |
0.777 |
|
| 2006 |
Gifford ML, Gutierrez RA, Birnbaum KD, Coruzzi GM. A systems approach to understanding N_control of gene networks in the Arabidopsis root Developmental Biology. 295: 334. DOI: 10.1016/J.Ydbio.2006.04.041 |
0.817 |
|
| 2005 |
Li C, Potuschak T, Colón-Carmona A, Gutiérrez RA, Doerner P. Arabidopsis TCP20 links regulation of growth and cell division control pathways. Proceedings of the National Academy of Sciences of the United States of America. 102: 12978-83. PMID 16123132 DOI: 10.1073/Pnas.0504039102 |
0.307 |
|
| 2005 |
Gutiérrez RA, Shasha DE, Coruzzi GM. Systems biology for the virtual plant. Plant Physiology. 138: 550-4. PMID 15955912 DOI: 10.1104/Pp.104.900150 |
0.751 |
|
| 2004 |
Wang R, Tischner R, Gutiérrez RA, Hoffman M, Xing X, Chen M, Coruzzi G, Crawford NM. Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiology. 136: 2512-22. PMID 15333754 DOI: 10.1104/Pp.104.044610 |
0.804 |
|
| 2004 |
Gutiérrez RA, Larson MD, Wilkerson C. The plant-specific database. Classification of Arabidopsis proteins based on their phylogenetic profile. Plant Physiology. 135: 1888-92. PMID 15326280 DOI: 10.1104/Pp.104.043687 |
0.326 |
|
| 2004 |
Gutiérrez RA, Green PJ, Keegstra K, Ohlrogge JB. Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms? Genome Biology. 5: R53. PMID 15287975 DOI: 10.1186/Gb-2004-5-8-R53 |
0.609 |
|
| 2002 |
Gutierrez RA, Ewing RM, Cherry JM, Green PJ. Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes. Proceedings of the National Academy of Sciences of the United States of America. 99: 11513-8. PMID 12167669 DOI: 10.1073/Pnas.152204099 |
0.652 |
|
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