Yuichi Wakamoto - Publications

Affiliations: 
Department of Basic Science The University of Tokyo, Bunkyō-ku, Tōkyō-to, Japan 

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Seita A, Nakaoka H, Okura R, Wakamoto Y. Intrinsic growth heterogeneity of mouse leukemia cells underlies differential susceptibility to a growth-inhibiting anticancer drug. Plos One. 16: e0236534. PMID 33524064 DOI: 10.1371/journal.pone.0236534  0.347
2018 Kobayashi-Kirschvink KJ, Nakaoka H, Oda A, Kamei KF, Nosho K, Fukushima H, Kanesaki Y, Yajima S, Masaki H, Ohta K, Wakamoto Y. Linear Regression Links Transcriptomic Data and Cellular Raman Spectra. Cell Systems. PMID 29936183 DOI: 10.1016/J.Cels.2018.05.015  0.318
2018 Nakajima A, Ishida M, Fujimori T, Wakamoto Y, Sawai S. The microfluidic lighthouse: an omnidirectional gradient generator. Lab On a Chip. 16: 4382-4394. PMID 27735954 DOI: 10.1039/C6Lc00898D  0.33
2018 Kobayashi-Kirschvink KJ, Nakaoka H, Kamei KF, Oda A, Nosho K, Fukushima H, Kanesaki Y, Yajima S, Masaki H, Ohta K, Wakamoto Y. Non-Destructive Prediction of Transcriptomes from Single-Cell Raman Microscopy Biophysical Journal. 114: 390a. DOI: 10.1016/J.Bpj.2017.11.2157  0.362
2017 Nakaoka H, Wakamoto Y. Aging, mortality, and the fast growth trade-off of Schizosaccharomyces pombe. Plos Biology. 15: e2001109. PMID 28632741 DOI: 10.1371/Journal.Pbio.2001109  0.389
2017 Nozoe T, Kussell E, Wakamoto Y. Inferring fitness landscapes and selection on phenotypic states from single-cell genealogical data. Plos Genetics. 13: e1006653. PMID 28267748 DOI: 10.1371/Journal.Pgen.1006653  0.449
2016 Hashimoto M, Nozoe T, Nakaoka H, Okura R, Akiyoshi S, Kaneko K, Kussell E, Wakamoto Y. Noise-driven growth rate gain in clonal cellular populations. Proceedings of the National Academy of Sciences of the United States of America. 113: 3251-6. PMID 26951676 DOI: 10.1073/Pnas.1519412113  0.366
2016 Pleška M, Qian L, Okura R, Bergmiller T, Wakamoto Y, Kussell E, Guet CC. Bacterial Autoimmunity Due to a Restriction-Modification System. Current Biology : Cb. PMID 26804559 DOI: 10.1016/J.Cub.2015.12.041  0.505
2016 Wakamoto Y. OB-I-4Techniques for Measuring and Analyzing Single-Cell Histories and Lineage Trees Microscopy. 65: i9.2-i9. DOI: 10.1093/Jmicro/Dfw045  0.37
2014 Nozoe T, Wakamoto Y. 2P274 Detecting the selection acting on heterogeneous cell phenotypes without environmental perturbation(24. Mathematical biology,Poster) Seibutsu Butsuri. 54: S240. DOI: 10.2142/Biophys.54.S240_4  0.348
2014 Nozoe T, Wakamoto Y. 2SAP-05 Single-cell lineage statistics reveals fitness and selection strength for heterogeneous phenotypic states(Scenario of functions from minority and number fluctuations,Symposium,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014)) Seibutsu Butsuri. 54: S130. DOI: 10.2142/Biophys.54.S130_6  0.374
2014 Nozoe T, Wakamoto Y. Experimental Quantification of Fitness Assigned to Cell Lineage Phenotypes Biophysical Journal. 106: 189a. DOI: 10.1016/J.Bpj.2013.11.1129  0.421
2013 Santi I, Dhar N, Bousbaine D, Wakamoto Y, McKinney JD. Single-cell dynamics of the chromosome replication and cell division cycles in mycobacteria Nature Communications. 4. PMID 24036848 DOI: 10.1038/Ncomms3470  0.462
2013 Wakamoto Y, Dhar N, Chait R, Schneider K, Signorino-Gelo F, Leibler S, McKinney JD. Dynamic persistence of antibiotic-stressed mycobacteria. Science (New York, N.Y.). 339: 91-5. PMID 23288538 DOI: 10.1126/Science.1229858  0.605
2013 Ono S, Okura R, Wakamoto Y. 1P137 In vivo realization of the minimal stem cell model in Escherichia coli(09.Development & Differentation,Poster,The 51st Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 53: S128. DOI: 10.2142/Biophys.53.S128_4  0.354
2012 Maruyama A, Wakamoto Y, Nakamura S, Michiue T, Sakai S, Hexig B, Akaike T, Ohnuma K. 1D1400 Single-cell-based analysis of differentiation of mouse ES cells(Development, Differentiation, Neuroscience,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 52: S25. DOI: 10.2142/Biophys.52.S25_1  0.408
2012 Nakamura S, Maruyama A, Wakamoto Y, Sakai S, Hexig B, Akaike T, Ohnuma K. 3PS045 Perfusion device to observe of single ES cells(The 50th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 52: S154. DOI: 10.2142/Biophys.52.S154_1  0.368
2012 Wakamoto Y. 2SF-01 Inconsistency between population and single cell growth rates revealed by dynamics cytometer(2SF Inherent variability and information coding in biological systems,Symposium,The 50th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 52: S13-S14. DOI: 10.2142/Biophys.52.S13_6  0.351
2012 Ono S, Okura R, Wakamoto Y. 1PT215 Synthetic biology of stem cells : creating artificial gene network of "differentiation"(The 50th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 52: S105. DOI: 10.2142/Biophys.52.S105_1  0.321
2012 Nozoe T, Okura R, Wakamoto Y. Single-Cell Level Verification of Relation Between Gene Expression Noise and Phenotypic Adaptation to Antibiotic in Escherichia Coli Biophysical Journal. 102: 197a. DOI: 10.1016/J.Bpj.2011.11.1072  0.309
2012 Hashimoto M, Wakamoto Y. Quantifying Bacterial Growth and Gene Expression using New Long-Term Single-Cell Observation System Biophysical Journal. 102: 195a. DOI: 10.1016/J.Bpj.2011.11.1063  0.469
2011 Tomita T, Sugawara T, Wakamoto Y. Multitude of morphological dynamics of giant multilamellar vesicles in regulated nonequilibrium environments. Langmuir : the Acs Journal of Surfaces and Colloids. 27: 10106-12. PMID 21702436 DOI: 10.1021/La2018456  0.312
2011 Nozoe T, Okura R, Wakamoto Y. 2J1536 Single-Cell Level Observation of Phenotypic Heredity and Adaptation to Antibiotic in Escherichia Coli(Measurements, Miscellaneous topics,The 48th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 51: S92. DOI: 10.2142/Biophys.51.S92_1  0.412
2011 Hashimoto M, Okura R, Wakamoto Y. 2J1524 The relations between cell growth and fluctuations in gene expression(Measurements, Miscellaneous topics,The 48th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 51: S91-S92. DOI: 10.2142/Biophys.51.S91_6  0.368
2011 Maruyama A, Oonuma K, Wakamoto Y. 3C1334 Time-lapse imaging of mES cell monolayer cultured for detection of fluctuation between undifferentiated and differentiated states(3C Molecular genetics & Gene expression, Development & Differentation, Radiobiology & Active oxygen,The 49th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 51: S114-S115. DOI: 10.2142/Biophys.51.S114_6  0.316
2010 Wakamoto Y. 2SA1045 Microbial persistence as spontaneous phenotypic adaptation through stochastic drift(2SA Dynamics of Cell System and Molecular-Machine Components in Bacteria,The 48th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 50: S7. DOI: 10.2142/Biophys.50.S7_1  0.37
2010 Hashimoto M, Wakamoto Y. 2P328 Gene expression in growing cells(The 48th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 50: S140. DOI: 10.2142/Biophys.50.S140_4  0.363
2010 Shirokawa Y, Wakamoto Y, Shimada M. 2P153 Different fates within clonal cells of diatom during sexual induction(The 48th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 50: S109. DOI: 10.2142/Biophys.50.S109_2  0.335
2009 Shirokawa Y, Karino K, Mayama S, Wakamoto Y, Shimada M. 1P-242 Phenotypic plasticity of the cell morphology of the centric diatom (Cyclotella meneghiniana) by the on-chip single-cell cultivation system(Ecology & Environment, The 47th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 49: S100. DOI: 10.2142/Biophys.49.S100_2  0.456
2007 Umehara S, Inoue I, Wakamoto Y, Yasuda K. Origin of individuality of two daughter cells during the division process examined by the simultaneous measurement of growth and swimming property using an on-chip single-cell cultivation system. Biophysical Journal. 93: 1061-7. PMID 17496044 DOI: 10.1529/biophysj.106.098061  0.408
2006 Ayano S, Wakamoto Y, Yamashita S, Yasuda K. Quantitative measurement of damage caused by 1064-nm wavelength optical trapping of Escherichia coli cells using on-chip single cell cultivation system. Biochemical and Biophysical Research Communications. 350: 678-84. PMID 17027921 DOI: 10.1016/J.Bbrc.2006.09.115  0.421
2006 Wakamoto Y, Yasuda K. Quantitative evaluation of cell-to-cell communication effects in cell group class using on-chip individual-cell-based cultivation system. Biochemical and Biophysical Research Communications. 349: 1130-8. PMID 16970916 DOI: 10.1016/J.Bbrc.2006.08.149  0.443
2006 Wakamoto Y, Yasuda K. Epigenetic inheritance of elongated phenotypes between generations revealed by individual-cell-based direct observation Measurement Science and Technology. 17: 3171-3177. DOI: 10.1088/0957-0233/17/12/S09  0.455
2005 Wakamoto Y, Ramsden J, Yasuda K. Single-cell growth and division dynamics showing epigenetic correlations. The Analyst. 130: 311-7. PMID 15724159 DOI: 10.1039/B409860A  0.426
2005 Orita K, Shindou H, Matsumura K, Wakamoto Y, Ishimoto H, Yanagihara K, Kohno S, Yasuda K. 2P326 Analyzing the single cell response of macrophage to the antigen stimulation (II) Processing of acquired information in the single cell Seibutsu Butsuri. 45: S201. DOI: 10.2142/Biophys.45.S201_2  0.367
2004 Hattori A, Umehara S, Wakamoto Y, Yasuda K. 3P309 Simultaneous measurement of growth and movement of swimming cells using onchip single-cell cultivation system Seibutsu Butsuri. 44: S267. DOI: 10.2142/Biophys.44.S267_1  0.427
2004 Umehara S, Hattori A, Wakamoto Y, Yasuda K. Simultaneous Measurement of Growth and Movement of Cells Exploiting On-Chip Single-Cell Cultivation Assay Japanese Journal of Applied Physics. 43: 1214-1217. DOI: 10.1143/Jjap.43.1214  0.459
2004 Wakamoto Y, Inoue I, Moriguchi H, Yasuda K. [On-chip single-cell cultivation system]. Seikagaku. 73: 1439-1443. DOI: 10.1007/978-1-4020-2975-2_9  0.457
2003 Umehara S, Wakamoto Y, Inoue I, Yasuda K. On-chip single-cell microcultivation assay for monitoring environmental effects on isolated cells. Biochemical and Biophysical Research Communications. 305: 534-40. PMID 12763026 DOI: 10.1016/S0006-291X(03)00794-0  0.47
2003 Wakamoto Y, Umehara S, Inoue I, Yasuda K. Measurement of differences in phenotype of single cells through generations in a constant condition Seibutsu Butsuri. 43: S164. DOI: 10.2142/Biophys.43.S164_1  0.399
2003 Umehara S, Wakamoto Y, Hattori A, Inoue I, Yasuda K. Adaptation dynamics of a single Escherichia coli cell visualized by the simultaneous measurement of growth and motility Seibutsu Butsuri. 43: S115. DOI: 10.2142/Biophys.43.S115_2  0.376
2003 Hattori A, Umehara S, Wakamoto Y, Yasuda K. Measurement of Incident Angle Dependence of Swimming Bacterium Reflection Using On-Chip Single-Cell Cultivation Assay Japanese Journal of Applied Physics. 42: L873-L875. DOI: 10.1143/Jjap.42.L873  0.447
2003 Wakamoto Y, Umehara S, Matsumura K, Inoue I, Yasuda K. Development of non-destructive, non-contact single-cell based differential cell assay using on-chip microcultivation and optical tweezers Sensors and Actuators B: Chemical. 96: 693-700. DOI: 10.1016/S0925-4005(03)00549-5  0.498
2003 Moriguchi H, Takahashi K, Sugio Y, Wakamoto Y, Inoue I, Jimbo Y, Yasuda K. On-chip neural cell cultivation using agarose-microchamber array constructed by a photothermal etching method Electrical Engineering in Japan. 146: 37-42. DOI: 10.1002/Eej.10215  0.362
2002 Moriguchi H, Wakamoto Y, Sugio Y, Takahashi K, Inoue I, Yasuda K. An agar-microchamber cell-cultivation system: flexible change of microchamber shapes during cultivation by photo-thermal etching. Lab On a Chip. 2: 125-32. PMID 15100846 DOI: 10.1039/B202569H  0.385
2002 Wakamoto Y, Inoue I, Moriguchi H, Yasuda K. Analysis of single-cell differences by use of an on-chip microculture system and optical trapping. Fresenius' Journal of Analytical Chemistry. 371: 276-81. PMID 11678202 DOI: 10.1007/S002160100999  0.454
2002 Kaneko T, Hattori A, Takahashi K, Inoue I, Yamano Y, Moriguchi H, Sugio Y, Wakamoto Y, Kojima K, Umehara S, Matsumura K, Ayano S, Yasuda K. 1H1650 Time-lapse observation of cell dynamics using on-chip cell-cultivation system Seibutsu Butsuri. 42: S46. DOI: 10.2142/Biophys.42.S46_1  0.415
2002 Matsumura K, Wakamoto Y, Yagi T, Kamiya R, Yasuda K. 3O0945 Analysis of Chlamydomonas cell division cycle to light intensity change using the one-cell long-term cultivation system Seibutsu Butsuri. 42: S200. DOI: 10.2142/Biophys.42.S200_2  0.352
2002 Ayano S, Yamashita S, Wakamoto Y, Yasuda K. 3I1000 Quantitative estimation of optical trap damage to cells Seibutsu Butsuri. 42: S173. DOI: 10.2142/Biophys.42.S173_2  0.323
2002 Hattori A, Wakamoto Y, Yasuda K. 3I0930 Development of pattern analysis system for a variation of single cell movement of E.coli using microfabrication and image processing Seibutsu Butsuri. 42: S172. DOI: 10.2142/Biophys.42.S172_4  0.331
2001 Inoue I, Wakamoto Y, Moriguchi H, Okano K, Yasuda K. On-chip culture system for observation of isolated individual cells. Lab On a Chip. 1: 50-5. PMID 15100889 DOI: 10.1039/B103931H  0.453
2001 Moriguchi H, Wakamoto Y, Sugio Y, Takahashi K, Inoue I, Yasuda K. Agar Micro-chamber : A new approach to the application of micro fabrication to cell culture system Seibutsu Butsuri. 41: S155. DOI: 10.2142/Biophys.41.S155_1  0.329
2000 Ippei I, Wakamoto Y, Ohnuma K, Kashiwagi A, Yomo T, Kaneko K, Yasuda K. Observation of cell division and movility in microculture of a Escherichia coli using novel microchip-microscopy system. Seibutsu Butsuri. 40: S16. DOI: 10.2142/Biophys.40.S16_2  0.442
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