Erika A. Lindquist, Ph.D. - Publications

Affiliations: 
2000 University of California, Berkeley, Berkeley, CA 
Area:
Molecular Biology, Microbiology Biology

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Peter M, Kohler A, Ohm RA, Kuo A, Krützmann J, Morin E, Arend M, Barry KW, Binder M, Choi C, Clum A, Copeland A, Grisel N, Haridas S, Kipfer T, ... ... Lindquist E, et al. Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nature Communications. 7: 12662. PMID 27601008 DOI: 10.1038/Ncomms12662  0.32
2016 Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, ... ... Lindquist EA, et al. Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535936 DOI: 10.1073/Pnas.1603941113  0.32
2016 Arango Isaza RE, Diaz-Trujillo C, Dhillon B, Aerts A, Carlier J, Crane CF, V de Jong T, de Vries I, Dietrich R, Farmer AD, Fortes Fereira C, Garcia S, Guzman M, Hamelin RC, Lindquist EA, et al. Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control. Plos Genetics. 12: e1005876. PMID 27512984 DOI: 10.1371/journal.pgen.1005876  0.32
2016 Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev IV, Singer SW, et al. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology. 7: 238. PMID 26973616 DOI: 10.3389/Fmicb.2016.00238  0.32
2015 Doré J, Perraud M, Dieryckx C, Kohler A, Morin E, Henrissat B, Lindquist E, Zimmermann SD, Girard V, Kuo A, Grigoriev IV, Martin F, Marmeisse R, Gay G. Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis. The New Phytologist. PMID 26171947 DOI: 10.1111/nph.13546  0.32
2015 Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canbäck B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Doré J, Floudas D, ... ... Lindquist EA, et al. Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature Genetics. 47: 410-5. PMID 25706625 DOI: 10.1038/Ng.3223  0.32
2014 Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, et al. Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential. Proceedings of the National Academy of Sciences of the United States of America. 111: 16995-7002. PMID 25362047 DOI: 10.1073/Pnas.1418963111  0.32
2014 Riley R, Salamov AA, Brown DW, Nagy LG, Floudas D, Held BW, Levasseur A, Lombard V, Morin E, Otillar R, Lindquist EA, Sun H, LaButti KM, Schmutz J, Jabbour D, et al. Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. Proceedings of the National Academy of Sciences of the United States of America. 111: 9923-8. PMID 24958869 DOI: 10.1073/Pnas.1400592111  0.32
2013 Burow LC, Woebken D, Marshall IP, Lindquist EA, Bebout BM, Prufert-Bebout L, Hoehler TM, Tringe SG, Pett-Ridge J, Weber PK, Spormann AM, Singer SW. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics. The Isme Journal. 7: 817-29. PMID 23190731 DOI: 10.1038/Ismej.2012.150  0.32
2012 Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, et al. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. Plos Pathogens. 8: e1003037. PMID 23236275 DOI: 10.1371/Journal.Ppat.1003037  0.32
2012 Morin E, Kohler A, Baker AR, Foulongne-Oriol M, Lombard V, Nagy LG, Ohm RA, Patyshakuliyeva A, Brun A, Aerts AL, Bailey AM, Billette C, Coutinho PM, Deakin G, Doddapaneni H, ... ... Lindquist EA, et al. Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proceedings of the National Academy of Sciences of the United States of America. 109: 17501-6. PMID 23045686 DOI: 10.1073/Pnas.1206847109  0.32
2012 Suzuki H, MacDonald J, Syed K, Salamov A, Hori C, Aerts A, Henrissat B, Wiebenga A, VanKuyk PA, Barry K, Lindquist E, LaButti K, Lapidus A, Lucas S, Coutinho P, et al. Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize. Bmc Genomics. 13: 444. PMID 22937793 DOI: 10.1186/1471-2164-13-444  0.32
2012 Lamour KH, Mudge J, Gobena D, Hurtado-Gonzales OP, Schmutz J, Kuo A, Miller NA, Rice BJ, Raffaele S, Cano LM, Bharti AK, Donahoo RS, Finley S, Huitema E, Hulvey J, ... ... Lindquist EA, et al. Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. Molecular Plant-Microbe Interactions : Mpmi. 25: 1350-60. PMID 22712506 DOI: 10.1094/Mpmi-02-12-0028-R  0.32
2012 Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP. Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus. Proceedings of the National Academy of Sciences of the United States of America. 109: E2173-82. PMID 22586090 DOI: 10.1073/Pnas.1112750109  0.32
2012 Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, ... ... Lindquist EA, et al. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proceedings of the National Academy of Sciences of the United States of America. 109: 5458-63. PMID 22434909 DOI: 10.1073/Pnas.1119912109  0.32
2012 Chan CX, Blouin NA, Zhuang Y, Zäuner S, Prochnik SE, Lindquist E, Lin S, Benning C, Lohr M, Yarish C, Gantt E, Grossman AR, Lu S, Müller K, Stiller J, et al. Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism Journal of Phycology. 48: 1328-1342. DOI: 10.1111/j.1529-8817.2012.01229.x  0.32
2011 Grbić M, Van Leeuwen T, Clark RM, Rombauts S, Rouzé P, Grbić V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernández-Crespo P, Diaz I, Martinez M, Navajas M, Sucena É, ... ... Lindquist E, et al. The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature. 479: 487-92. PMID 22113690 DOI: 10.1038/Nature10640  0.32
2011 Ellison CE, Stajich JE, Jacobson DJ, Natvig DO, Lapidus A, Foster B, Aerts A, Riley R, Lindquist EA, Grigoriev IV, Taylor JW. Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma. Genetics. 189: 55-69. PMID 21750257 DOI: 10.1534/Genetics.111.130690  0.32
2011 Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, ... ... Lindquist EA, et al. Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Sciences of the United States of America. 108: 9166-71. PMID 21536894 DOI: 10.1073/Pnas.1019315108  0.32
2011 Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, ... ... Lindquist E, et al. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biology. 12: R40. PMID 21501500 DOI: 10.1186/Gb-2011-12-4-R40  0.32
2011 Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, Zhang Y, Collier JL, Wurch LL, Kustka AB, Dill BD, Shah M, VerBerkmoes NC, Kuo A, Terry A, ... ... Lindquist EA, et al. Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proceedings of the National Academy of Sciences of the United States of America. 108: 4352-7. PMID 21368207 DOI: 10.1073/Pnas.1016106108  0.32
2011 Sucgang R, Kuo A, Tian X, Salerno W, Parikh A, Feasley CL, Dalin E, Tu H, Huang E, Barry K, Lindquist E, Shapiro H, Bruce D, Schmutz J, Salamov A, et al. Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum. Genome Biology. 12: R20. PMID 21356102 DOI: 10.1186/Gb-2011-12-2-R20  0.32
2011 Swarbreck SM, Lindquist EA, Ackerly DD, Andersen GL. Analysis of leaf and root transcriptomes of soil-grown Avena barbata plants. Plant & Cell Physiology. 52: 317-32. PMID 21310848 DOI: 10.1093/pcp/pcq188  0.32
2010 He S, Wurtzel O, Singh K, Froula JL, Yilmaz S, Tringe SG, Wang Z, Chen F, Lindquist EA, Sorek R, Hugenholtz P. Validation of two ribosomal RNA removal methods for microbial metatranscriptomics. Nature Methods. 7: 807-12. PMID 20852648 DOI: 10.1038/Nmeth.1507  0.32
2010 Wang S, Peatman E, Abernathy J, Waldbieser G, Lindquist E, Richardson P, Lucas S, Wang M, Li P, Thimmapuram J, Liu L, Vullaganti D, Kucuktas H, Murdock C, Small BC, et al. Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies. Genome Biology. 11: R8. PMID 20096101 DOI: 10.1186/Gb-2010-11-1-R8  0.32
2009 Worden AZ, Lee JH, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, ... ... Lindquist EA, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (New York, N.Y.). 324: 268-72. PMID 19359590 DOI: 10.1126/Science.1167222  0.32
2009 Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, et al. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences of the United States of America. 106: 1954-9. PMID 19193860 DOI: 10.1073/Pnas.0809575106  0.32
2008 Bluhm BH, Dhillon B, Lindquist EA, Kema GH, Goodwin SB, Dunkle LD. Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth. Bmc Genomics. 9: 523. PMID 18983654 DOI: 10.1186/1471-2164-9-523  0.32
2008 Satou Y, Mineta K, Ogasawara M, Sasakura Y, Shoguchi E, Ueno K, Yamada L, Matsumoto J, Wasserscheid J, Dewar K, Wiley GB, Macmil SL, Roe BA, Zeller RW, Hastings KE, ... ... Lindquist E, et al. Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations. Genome Biology. 9: R152. PMID 18854010 DOI: 10.1186/Gb-2008-9-10-R152  0.32
2008 Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (New York, N.Y.). 319: 64-9. PMID 18079367 DOI: 10.1126/Science.1150646  0.32
2006 Stillman JH, Teranishi KS, Tagmount A, Lindquist EA, Brokstein PB. Construction and characterization of EST libraries from the porcelain crab, Petrolisthes cinctipes. Integrative and Comparative Biology. 46: 919-30. PMID 21672796 DOI: 10.1093/icb/icl007  0.32
2002 Kleba BJ, Banta E, Lindquist EA, Stephens RS. Recruitment of mammalian cell fibronectin to the surface of Chlamydia trachomatis. Infection and Immunity. 70: 3935-8. PMID 12065538 DOI: 10.1128/Iai.70.7.3935-3938.2002  0.4
2002 Lindquist EA, Marks JD, Kleba BJ, Stephens RS. Phage-display antibody detection of Chlamydia trachomatis-associated antigens Microbiology. 148: 443-451. PMID 11832508 DOI: 10.1099/00221287-148-2-443  0.32
1996 Zhao Q, Lammel CJ, Lindquist EA, Stephens RS. Recall of original serologic response after challenge with homologous and heterologous Chlamydia trachomatis serovars. The Journal of Infectious Diseases. 173: 609-18. PMID 8627024 DOI: 10.1093/Infdis/173.3.609  0.44
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