| Year |
Citation |
Score |
| 2023 |
Mehta A, Kamal AHM, Cornelius S, Chowdhury SM. Protein-Protein Interaction Network Mapping by Affinity Purification Cross-Linking Mass Spectrometry (AP-XL-MS) based Proteomics. Methods in Molecular Biology (Clifton, N.J.). 2690: 255-267. PMID 37450153 DOI: 10.1007/978-1-0716-3327-4_22 |
0.412 |
|
| 2022 |
Shahinuzzaman ADA, Kamal AHM, Chakrabarty JK, Rahman A, Chowdhury SM. Identification of Inflammatory Proteomics Networks of Toll-like Receptor 4 through Immunoprecipitation-Based Chemical Cross-Linking Proteomics. Proteomes. 10. PMID 36136309 DOI: 10.3390/proteomes10030031 |
0.351 |
|
| 2021 |
Fang Z, Wanigasekara MSK, Yepremyan A, Lam B, Thapa P, Foss FW, Chowdhury SM. Mass Spectrometry-Cleavable Protein N-Terminal Tagging Strategy for System-Level Protease Activity Profiling. Journal of the American Society For Mass Spectrometry. PMID 34928623 DOI: 10.1021/jasms.1c00350 |
0.395 |
|
| 2021 |
Fang Z, Chowdhury SM. Dual-Stage Neutral Loss Tandem Mass Spectrometric Strategy for Confident Identification of Protein Prenylation. Analytical Chemistry. 93: 13169-13176. PMID 34558911 DOI: 10.1021/acs.analchem.1c01617 |
0.46 |
|
| 2020 |
Zacharias AO, Fang Z, Rahman A, Talukdar A, Cornelius S, Chowdhury SM. Affinity and chemical enrichment strategies for mapping low-abundance protein modifications and protein-interaction networks. Journal of Separation Science. PMID 33289315 DOI: 10.1002/jssc.202000930 |
0.38 |
|
| 2020 |
Chakrabarty JK, Kamal AHM, Shahinuzzaman ADA, Chowdhury SM. Proteomics Network Analysis of Polarized Macrophages. Methods in Molecular Biology (Clifton, N.J.). 2184: 61-75. PMID 32808218 DOI: 10.1007/978-1-0716-0802-9_5 |
0.354 |
|
| 2020 |
Chakrabarty JK, Bugarin A, Chowdhury SM. Evaluating the performance of an ETD-cleavable cross-linking strategy for elucidating protein structures. Journal of Proteomics. 103846. PMID 32480079 DOI: 10.1016/J.Jprot.2020.103846 |
0.519 |
|
| 2020 |
Shahinuzzaman DA, Chakrabarty JK, Fang Z, Smith D, Kamal AHM, Chowdhury SM. Improved in-solution trypsin digestion method for Methanol-Chloroform precipitated cellular proteomics sample. Journal of Separation Science. PMID 32073721 DOI: 10.1002/Jssc.201901273 |
0.427 |
|
| 2020 |
Chakrabarty JK, Sadananda SC, Bhat A, Naik AJ, Ostwal DV, Chowdhury SM. High Confidence Identification of Cross-Linked Peptides by an Enrichment-Based Dual Cleavable Cross-Linking Technology and Data Analysis tool Cleave-XL. Journal of the American Society For Mass Spectrometry. 31: 173-182. PMID 32031390 DOI: 10.1021/Jasms.9B00111 |
0.526 |
|
| 2019 |
Kamal AHM, Aloor JJ, Fessler MB, Chowdhury SM. Cross-linking Proteomics Indicates Effects of Simvastatin on the TLR2 interactome and Reveals ACTR1A as a Novel Regulator of the TLR2 Signal Cascade. Molecular & Cellular Proteomics : McP. PMID 31221720 DOI: 10.1074/Mcp.Ra119.001377 |
0.359 |
|
| 2019 |
Fang Z, Baghdady YZ, Schug KA, Chowdhury SM. Evaluation of Different Stationary Phases in the Separation of Inter-crosslinked Peptides. Journal of Proteome Research. PMID 30786713 DOI: 10.1021/Acs.Jproteome.9B00114 |
0.481 |
|
| 2018 |
Wanigasekara MSK, Huang X, Chakrabarty JK, Bugarin A, Chowdhury SM. Arginine-Selective Chemical Labeling Approach for Identification and Enrichment of Reactive Arginine Residues in Proteins. Acs Omega. 3: 14229-14235. PMID 31458113 DOI: 10.1021/acsomega.8b01729 |
0.455 |
|
| 2018 |
Kamal AHM, Fessler MB, Chowdhury SM. Comparative and network-based proteomic analysis of low dose ethanol- and lipopolysaccharide-induced macrophages. Plos One. 13: e0193104. PMID 29481576 DOI: 10.1371/Journal.Pone.0193104 |
0.346 |
|
| 2018 |
Kamal AHM, Chakrabarty JK, Udden SMN, Zaki MH, Chowdhury SM. Inflammatory Proteomic Network Analysis of Statin-treated and Lipopolysaccharide-activated Macrophages. Scientific Reports. 8: 164. PMID 29317699 DOI: 10.1038/S41598-017-18533-1 |
0.387 |
|
| 2016 |
Bhawal RP, Shahinuzzaman AD, Chowdhury SM. Gas-Phase Fragmentation Behavior of Oxidized Prenyl Peptides by CID and ETD Tandem Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 27785692 DOI: 10.1007/S13361-016-1503-0 |
0.495 |
|
| 2016 |
Chakrabarty JK, Naik AG, Fessler MB, Munske GR, Chowdhury SM. Differential tandem mass spectrometry-based cross-linker: a new approach for high confidence in identifying protein cross-linking. Analytical Chemistry. PMID 27649375 DOI: 10.1021/Acs.Analchem.6B02886 |
0.568 |
|
| 2016 |
Wanigasekara MS, Chowdhury SM. Evaluation of chemical labeling methods for identifying functional arginine residues of proteins by mass spectrometry. Analytica Chimica Acta. 935: 197-206. PMID 27543028 DOI: 10.1016/J.Aca.2016.06.051 |
0.525 |
|
| 2015 |
Chowdhury SM, Zhu X, Aloor JJ, Azzam KM, Gabor KA, Ge W, Addo KA, Tomer KB, Parks JS, Fessler MB. Proteomic Analysis of ABCA1-Null Macrophages Reveals a Role for Stomatin-Like Protein-2 in Raft Composition and Toll-Like Receptor Signaling. Molecular & Cellular Proteomics : McP. 14: 1859-70. PMID 25910759 DOI: 10.1074/Mcp.M114.045179 |
0.34 |
|
| 2015 |
Bhawal RP, Sadananda SC, Bugarin A, Laposa B, Chowdhury SM. Mass spectrometry cleavable strategy for identification and differentiation of prenylated peptides. Analytical Chemistry. 87: 2178-86. PMID 25616024 DOI: 10.1021/Ac503794S |
0.451 |
|
| 2014 |
Chowdhury SM, Munske GR, Yang J, Zhukova D, Nguyen H, Bruce JE. Solid-phase N-terminal peptide enrichment study by optimizing trypsin proteolysis on homoarginine-modified proteins by mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 28: 635-44. PMID 24519826 DOI: 10.1002/Rcm.6820 |
0.593 |
|
| 2011 |
Du X, Chowdhury SM, Manes NP, Wu S, Mayer MU, Adkins JN, Anderson GA, Smith RD. Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry. Journal of Proteome Research. 10: 923-31. PMID 21175198 DOI: 10.1021/Pr100848A |
0.548 |
|
| 2009 |
Shi L, Chowdhury SM, Smallwood HS, Yoon H, Mottaz-Brewer HM, Norbeck AD, McDermott JE, Clauss TR, Heffron F, Smith RD, Adkins JN. Proteomic investigation of the time course responses of RAW 264.7 macrophages to infection with Salmonella enterica. Infection and Immunity. 77: 3227-33. PMID 19528222 DOI: 10.1128/Iai.00063-09 |
0.356 |
|
| 2009 |
Chowdhury SM, Du X, Toli? N, Wu S, Moore RJ, Mayer MU, Smith RD, Adkins JN. Identification of cross-linked peptides after click-based enrichment using sequential collision-induced dissociation and electron transfer dissociation tandem mass spectrometry. Analytical Chemistry. 81: 5524-32. PMID 19496583 DOI: 10.1021/Ac900853K |
0.543 |
|
| 2009 |
Chowdhury SM, Shi L, Yoon H, Ansong C, Rommereim LM, Norbeck AD, Auberry KJ, Moore RJ, Adkins JN, Heffron F, Smith RD. A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis. Journal of Proteome Research. 8: 1504-14. PMID 19206470 DOI: 10.1021/Pr800865D |
0.422 |
|
| 2008 |
Rodland KD, Adkins JN, Ansong C, Chowdhury S, Manes NP, Shi L, Yoon H, Smith RD, Heffron F. Use of high-throughput mass spectrometry to elucidate host-pathogen interactions in Salmonella. Future Microbiology. 3: 625-34. PMID 19072180 DOI: 10.2217/17460913.3.6.625 |
0.418 |
|
| 2007 |
Chowdhury SM, Munske GR, Ronald RC, Bruce JE. Evaluation of low energy CID and ECD fragmentation behavior of mono-oxidized thio-ether bonds in peptides. Journal of the American Society For Mass Spectrometry. 18: 493-501. PMID 17126025 DOI: 10.1016/J.Jasms.2006.10.019 |
0.577 |
|
| 2006 |
Chowdhury SM, Munske GR, Tang X, Bruce JE. Collisionally activated dissociation and electron capture dissociation of several mass spectrometry-identifiable chemical cross-linkers. Analytical Chemistry. 78: 8183-93. PMID 17165806 DOI: 10.1021/Ac060789H |
0.619 |
|
| 2005 |
Chowdhury SM, Munske GR, Siems WF, Bruce JE. A new maleimide-bound acid-cleavable solid-support reagent for profiling phosphorylation. Rapid Communications in Mass Spectrometry : Rcm. 19: 899-909. PMID 15739244 DOI: 10.1002/Rcm.1869 |
0.57 |
|
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