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Rob Ness - Publications

Affiliations: 
University of Edinburgh, Edinburgh, Scotland, United Kingdom 
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35/49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Johnson MTJ, Arif I, Marchetti F, Munshi-South J, Ness RW, Szulkin M, Verrelli BC, Yauk CL, Anstett DN, Booth W, Caizergues AE, Carlen EJ, Dant A, González J, Lagos CG, et al. Effects of urban-induced mutations on ecology, evolution and health. Nature Ecology & Evolution. PMID 38641700 DOI: 10.1038/s41559-024-02401-z  0.37
2024 Caizergues AE, Santangelo JS, Ness RW, Angeoletto F, Anstett DN, Anstett J, Baena-Diaz F, Carlen EJ, Chaves JA, Comerford MS, Dyson K, Falahati-Anbaran M, Fellowes MDE, Hodgins KA, Hood GR, et al. Does urbanisation lead to parallel demographic shifts across the world in a cosmopolitan plant? Molecular Ecology. e17311. PMID 38468155 DOI: 10.1111/mec.17311  0.749
2024 Balogun EJ, Ness RW. The Effects of De Novo Mutation on Gene Expression and the Consequences for Fitness in Chlamydomonas reinhardtii. Molecular Biology and Evolution. 41. PMID 38366781 DOI: 10.1093/molbev/msae035  0.316
2023 Santangelo JS, Battlay P, Hendrickson BT, Kuo WH, Olsen KM, Kooyers NJ, Johnson MTJ, Hodgins KA, Ness RW. Haplotype-resolved, chromosome-level assembly of white clover (Trifolium repens L., Fabaceae). Genome Biology and Evolution. PMID 37542471 DOI: 10.1093/gbe/evad146  0.729
2022 Hasan AR, Lachapelle J, El-Shawa SA, Potjewyd R, Ford SA, Ness RW. Salt stress alters the spectrum of de novo mutation available to selection during experimental adaptation of Chlamydomonas reinhardtii. Evolution; International Journal of Organic Evolution. PMID 36036481 DOI: 10.1111/evo.14604  0.681
2022 Böndel KB, Samuels T, Craig RJ, Ness RW, Colegrave N, Keightley PD. The distribution of fitness effects of spontaneous mutations in Chlamydomonas reinhardtii inferred using frequency changes under experimental evolution. Plos Genetics. 18: e1009840. PMID 35704655 DOI: 10.1371/journal.pgen.1009840  0.636
2022 Santangelo JS, Ness RW, Cohan B, Fitzpatrick CR, Innes SG, Koch S, Miles LS, Munim S, Peres-Neto PR, Prashad C, Tong AT, Aguirre WE, Akinwole PO, Alberti M, Álvarez J, et al. Global urban environmental change drives adaptation in white clover. Science (New York, N.Y.). 375: 1275-1281. PMID 35298255 DOI: 10.1126/science.abk0989  0.756
2022 Oman M, Alam A, Ness RW. How Sequence Context-Dependent Mutability Drives Mutation Rate Variation in the Genome. Genome Biology and Evolution. 14. PMID 35218359 DOI: 10.1093/gbe/evac032  0.393
2021 López-Cortegano E, Craig RJ, Chebib J, Samuels T, Morgan AD, Kraemer SA, Böndel KB, Ness RW, Colegrave N, Keightley PD. De novo mutation rate variation and its determinants in Chlamydomonas. Molecular Biology and Evolution. PMID 33950243 DOI: 10.1093/molbev/msab140  0.778
2021 Craig RJ, Hasan AR, Ness RW, Keightley PD. Comparative genomics of Chlamydomonas. The Plant Cell. PMID 33793842 DOI: 10.1093/plcell/koab026  0.706
2020 Santangelo JS, Thompson KA, Cohan B, Syed J, Ness RW, Johnson MTJ. Predicting the strength of urban-rural clines in a Mendelian polymorphism along a latitudinal gradient. Evolution Letters. 4: 212-225. PMID 32547782 DOI: 10.1002/evl3.163  0.734
2020 Hasan AR, Ness RW. Recombination rate variation and infrequent sex influence genetic diversity in Chlamydomonas reinhardtii. Genome Biology and Evolution. PMID 32181819 DOI: 10.1093/gbe/evaa057  0.67
2019 Craig RJ, Böndel KB, Arakawa K, Nakada T, Ito T, Bell G, Colegrave N, Keightley PD, Ness RW. Patterns of population structure and complex haplotype sharing among field isolates of the green alga Chlamydomonas reinhardtii. Molecular Ecology. PMID 31338894 DOI: 10.1111/Mec.15193  0.626
2019 Böndel KB, Kraemer SA, Samuels T, McClean D, Lachapelle J, Ness RW, Colegrave N, Keightley PD. Inferring the distribution of fitness effects of spontaneous mutations in Chlamydomonas reinhardtii. Plos Biology. 17: e3000192. PMID 31242179 DOI: 10.1371/Journal.Pbio.3000192  0.663
2019 Hasan AR, Duggal JK, Ness RW. Consequences of recombination for the evolution of the mating type locus in Chlamydomonas reinhardtii. The New Phytologist. PMID 31222749 DOI: 10.1111/nph.16003  0.608
2018 Santangelo JS, Johnson MTJ, Ness RW. Modern spandrels: the roles of genetic drift, gene flow and natural selection in the evolution of parallel clines. Proceedings. Biological Sciences. 285. PMID 29743253 DOI: 10.1098/Rspb.2018.0230  0.759
2018 Exposito-Alonso M, Becker C, Schuenemann VJ, Reiter E, Setzer C, Slovak R, Brachi B, Hagmann J, Grimm DG, Chen J, Busch W, Bergelson J, Ness RW, Krause J, Burbano HA, et al. The rate and potential relevance of new mutations in a colonizing plant lineage. Plos Genetics. 14: e1007155. PMID 29432421 DOI: 10.1371/Journal.Pgen.1007155  0.461
2017 Booker TR, Ness RW, Keightley PD. The Recombination Landscape in Wild House Mice Inferred Using Population Genomic Data. Genetics. PMID 28751421 DOI: 10.1534/genetics.117.300063  0.616
2017 Trivedi J, Lachapelle J, Vanderwolf KJ, Misra V, Willis CKR, Ratcliffe JM, Ness RW, Anderson JB, Kohn LM. Fungus Causing White-Nose Syndrome in Bats Accumulates Genetic Variability in North America with No Sign of Recombination. Msphere. 2. PMID 28713859 DOI: 10.1128/mSphereDirect.00271-17  0.358
2015 Kraemer SA, Morgan AD, Ness RW, Keightley PD, Colegrave N. Fitness effects of new mutations in Chlamydomonas reinhardtii across two stress gradients. Journal of Evolutionary Biology. PMID 26663473 DOI: 10.1111/Jeb.12807  0.604
2015 Ness RW, Kraemer SA, Colegrave N, Keightley PD. Direct estimate of the spontaneous mutation rate uncovers the effects of drift and recombination in the Chlamydomonas reinhardtii plastid genome. Molecular Biology and Evolution. PMID 26615203 DOI: 10.1093/Molbev/Msv272  0.683
2015 Wiberg RA, Halligan DL, Ness RW, Necsulea A, Kaessmann H, Keightley PD. Assessing Recent Selection and Functionality at Long Noncoding RNA Loci in the Mouse Genome. Genome Biology and Evolution. 7: 2432-44. PMID 26272717 DOI: 10.1093/gbe/evv155  0.756
2015 Ness RW, Morgan AD, Vasanthakrishnan RB, Colegrave N, Keightley PD. Extensive de novo mutation rate variation between individuals and across the genome of Chlamydomonas reinhardtii. Genome Research. 25: 1739-49. PMID 26260971 DOI: 10.1101/Gr.191494.115  0.678
2015 Deinum EE, Halligan DL, Ness RW, Zhang YH, Cong L, Zhang JX, Keightley PD. Recent Evolution in Rattus norvegicus Is Shaped by Declining Effective Population Size. Molecular Biology and Evolution. PMID 26037536 DOI: 10.1093/molbev/msv126  0.78
2015 Arunkumar R, Ness RW, Wright SI, Barrett SC. The evolution of selfing is accompanied by reduced efficacy of selection and purging of deleterious mutations. Genetics. 199: 817-29. PMID 25552275 DOI: 10.1534/Genetics.114.172809  0.357
2015 Keightley PD, Pinharanda A, Ness RW, Simpson F, Dasmahapatra KK, Mallet J, Davey JW, Jiggins CD. Estimation of the spontaneous mutation rate in Heliconius melpomene. Molecular Biology and Evolution. 32: 239-43. PMID 25371432 DOI: 10.1093/Molbev/Msu302  0.633
2015 Keightley PD, Pinharanda A, Ness RW, Simpson F, Dasmahapatra KK, Mallet J, Davey JW, Jiggins CD. Estimation of the Spontaneous Mutation Rate in Heliconius melpomene Molecular Biology and Evolution. 32: 239-243. DOI: 10.1093/molbev/msu302  0.599
2014 Morgan AD, Ness RW, Keightley PD, Colegrave N. Spontaneous mutation accumulation in multiple strains of the green alga, Chlamydomonas reinhardtii. Evolution; International Journal of Organic Evolution. 68: 2589-602. PMID 24826801 DOI: 10.1111/evo.12448  0.656
2014 Keightley PD, Ness RW, Halligan DL, Haddrill PR. Estimation of the spontaneous mutation rate per nucleotide site in a Drosophila melanogaster full-sib family. Genetics. 196: 313-20. PMID 24214343 DOI: 10.1534/genetics.113.158758  0.761
2013 Halligan DL, Kousathanas A, Ness RW, Harr B, Eöry L, Keane TM, Adams DJ, Keightley PD. Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents. Plos Genetics. 9: e1003995. PMID 24339797 DOI: 10.1371/Journal.Pgen.1003995  0.745
2013 Kelleher J, Ness RW, Halligan DL. Processing genome scale tabular data with wormtable. Bmc Bioinformatics. 14: 356. PMID 24308302 DOI: 10.1186/1471-2105-14-356  0.648
2012 Ness RW, Zhang YH, Cong L, Wang Y, Zhang JX, Keightley PD. Nuclear gene variation in wild brown rats. G3 (Bethesda, Md.). 2: 1661-4. PMID 23275888 DOI: 10.1534/g3.112.004713  0.614
2012 Ness RW, Siol M, Barrett SC. Genomic consequences of transitions from cross- to self-fertilization on the efficacy of selection in three independently derived selfing plants. Bmc Genomics. 13: 611. PMID 23145563 DOI: 10.1186/1471-2164-13-611  0.3
2012 Ness RW, Morgan AD, Colegrave N, Keightley PD. Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii. Genetics. 192: 1447-54. PMID 23051642 DOI: 10.1534/genetics.112.145078  0.643
2008 Wright SI, Ness RW, Foxe JP, Barretty SCH. Genomic consequences of outcrossing and selfing in plants International Journal of Plant Sciences. 169: 105-118. DOI: 10.1086/523366  0.422
Low-probability matches (unlikely to be authored by this person)
2022 Garrett P, Becher H, Gussarova G, dePamphilis CW, Ness RW, Gopalakrishnan S, Twyford AD. Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (, Orobanchaceae). Frontiers in Plant Science. 13: 869583. PMID 35720561 DOI: 10.3389/fpls.2022.869583  0.3
2013 Hazzouri KM, Escobar JS, Ness RW, Killian Newman L, Randle AM, Kalisz S, Wright SI. Comparative population genomics in Collinsia sister species reveals evidence for reduced effective population size, relaxed selection, and evolution of biased gene conversion with an ongoing mating system shift. Evolution; International Journal of Organic Evolution. 67: 1263-78. PMID 23617907 DOI: 10.1111/Evo.12027  0.295
2010 Ness RW, Wright SI, Barrett SC. Mating-system variation, demographic history and patterns of nucleotide diversity in the Tristylous plant Eichhornia paniculata. Genetics. 184: 381-92. PMID 19917767 DOI: 10.1534/Genetics.109.110130  0.27
2016 Twyford AD, Ness RW. Strategies for complete plastid genome sequencing. Molecular Ecology Resources. PMID 27790830 DOI: 10.1111/1755-0998.12626  0.258
2015 Booker T, Ness RW, Charlesworth D. Molecular evolution: breakthroughs and mysteries in Batesian mimicry. Current Biology : Cb. 25: R506-8. PMID 26079083 DOI: 10.1016/J.Cub.2015.04.024  0.257
2011 Ness RW, Graham SW, Barrett SC. Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae. Molecular Biology and Evolution. 28: 3009-18. PMID 21633114 DOI: 10.1093/Molbev/Msr119  0.243
2011 Ness RW, Siol M, Barrett SC. De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants. Bmc Genomics. 12: 298. PMID 21649902 DOI: 10.1186/1471-2164-12-298  0.223
2022 Ford SA, Craig RJ, Ness RW. A novel method for identifying Chlamydomonas reinhardtii (Chlorophyta) and closely related species from nature. Journal of Phycology. PMID 36453860 DOI: 10.1111/jpy.13306  0.175
2009 Barrett SC, Ness RW, Vallejo-Marín M. Evolutionary pathways to self-fertilization in a tristylous plant species. The New Phytologist. 183: 546-56. PMID 19594695 DOI: 10.1111/J.1469-8137.2009.02937.X  0.158
2015 Booker T, Ness RW, Charlesworth D. Molecular Evolution: Breakthroughs and Mysteries in Batesian Mimicry Current Biology. 25: R506-R508. DOI: 10.1016/j.cub.2015.04.024  0.13
2019 Cheng AH, Bouchard-Cannon P, Ness RW, Cheng HM. RNA-sequencing data highlighting the time-of-day-dependent transcriptome of the central circadian pacemaker in -deficient mice. Data in Brief. 24: 103909. PMID 31061857 DOI: 10.1016/J.Dib.2019.103909  0.13
2017 Murray RL, Herridge EJ, Ness RW, Bussière LF. Are sex ratio distorting endosymbionts responsible for mating system variation among dance flies (Diptera: Empidinae)? Plos One. 12: e0178364. PMID 28609446 DOI: 10.1371/journal.pone.0178364  0.125
2020 Murray RL, Herridge EJ, Ness RW, Wiberg RAW, Bussière LF. Competition for access to mates predicts female-specific ornamentation and male investment in relative testis size. Evolution; International Journal of Organic Evolution. PMID 32352568 DOI: 10.1111/evo.13986  0.105
2019 Cheng AH, Bouchard-Cannon P, Hegazi S, Lowden C, Fung SW, Chiang CK, Ness RW, Cheng HM. SOX2-Dependent Transcription in Clock Neurons Promotes the Robustness of the Central Circadian Pacemaker. Cell Reports. 26: 3191-3202.e8. PMID 30893593 DOI: 10.1016/J.Celrep.2019.02.068  0.092
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