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Adam J. Reid - Publications

Affiliations: 
Wellcome Sanger 
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cunningham DA, Reid AJ, Hosking C, Deroost K, Tumwine-Downey I, Sanders M, Langhorne J. Identification of gametocyte-associated pir genes in the rodent malaria parasite, Plasmodium chabaudi chabaudi AS. Bmc Research Notes. 16: 56. PMID 37076932 DOI: 10.1186/s13104-023-06322-1  0.356
2023 Hoshizaki J, Adjalley SH, Thathy V, Judge K, Berriman M, Reid AJ, Lee MCS. Correction: A manually curated annotation characterises genomic features of P. falciparum lncRNAs. Bmc Genomics. 24: 189. PMID 37024784 DOI: 10.1186/s12864-023-09164-0  0.502
2022 Hoshizaki J, Adjalley SH, Thathy V, Judge K, Berriman M, Reid AJ, Lee MCS. A manually curated annotation characterises genomic features of P. falciparum lncRNAs. Bmc Genomics. 23: 780. PMID 36451097 DOI: 10.1186/s12864-022-09017-2  0.565
2022 Hocking SE, Stewart LB, Freville A, Reid AJ, Tarr SJ, Tetteh KKA, Flueck C, Ahouidi AD, Amambua-Ngwa A, Diakite M, Awandare GA, Conway DJ. Highly Variable Expression of Merozoite Surface Protein MSPDBL2 in Diverse Plasmodium falciparum Clinical Isolates and Transcriptome Scans for Correlating Genes. Mbio. 13: e0194822. PMID 35950755 DOI: 10.1128/mbio.01948-22  0.337
2022 Aunin E, Berriman M, Reid AJ. Characterising genome architectures using genome decomposition analysis. Bmc Genomics. 23: 398. PMID 35610562 DOI: 10.1186/s12864-022-08616-3  0.518
2022 Duque-Correa MA, Goulding D, Rodgers FH, Gillis JA, Cormie C, Rawlinson KA, Bancroft AJ, Bennett HM, Lotkowska ME, Reid AJ, Speak AO, Scott P, Redshaw N, Tolley C, McCarthy C, et al. Defining the early stages of intestinal colonisation by whipworms. Nature Communications. 13: 1725. PMID 35365634 DOI: 10.1038/s41467-022-29334-0  0.584
2022 Addy JWG, Bediako Y, Ndungu FM, Valetta JJ, Reid AJ, Mwacharo J, Ngoi JM, Wambua J, Otieno E, Musyoki J, Said K, Berriman M, Marsh K, Bejon P, Recker M, et al. 10-year longitudinal study of malaria in children: Insights into acquisition and maintenance of naturally acquired immunity. Wellcome Open Research. 6: 79. PMID 35141425 DOI: 10.12688/wellcomeopenres.16562.3  0.529
2021 Valletta JJ, Addy JWG, Reid AJ, Ndungu FM, Bediako Y, Mwacharo J, Mohammed KS, Musyoki J, Ngoi JM, Wambua J, Otieno E, Berriman M, Bejon P, Marsh K, Langhorne J, et al. Individual-level variations in malaria susceptibility and acquisition of clinical protection. Wellcome Open Research. 6: 22. PMID 35310901 DOI: 10.12688/wellcomeopenres.16524.2  0.304
2021 Rawlinson KA, Reid AJ, Lu Z, Driguez P, Wawer A, Coghlan A, Sankaranarayanan G, Buddenborg SK, Soria CD, McCarthy C, Holroyd N, Sanders M, Hoffmann KF, Wilcockson D, Rinaldi G, et al. Daily rhythms in gene expression of the human parasite Schistosoma mansoni. Bmc Biology. 19: 255. PMID 34852797 DOI: 10.1186/s12915-021-01189-9  0.586
2021 Little TS, Cunningham DA, Vandomme A, Lopez CT, Amis S, Alder C, Addy JWG, McLaughlin S, Hosking C, Christophides G, Reid AJ, Langhorne J. Analysis of pir gene expression across the Plasmodium life cycle. Malaria Journal. 20: 445. PMID 34823519 DOI: 10.1186/s12936-021-03979-6  0.398
2021 Aunin E, Böhme U, Blake D, Dove A, Smith M, Corton C, Oliver K, Betteridge E, Quail MA, McCarthy SA, Wood J, Tracey A, Torrance J, Sims Y, Howe K, ... ... Reid A, et al. The complete genome sequence of (Tyzzer 1929), a common gut parasite of chickens. Wellcome Open Research. 6: 225. PMID 34703904 DOI: 10.12688/wellcomeopenres.17100.1  0.544
2021 Minassian AM, Themistocleous Y, Silk SE, Barrett JR, Kemp A, Quinkert D, Nielsen CM, Edwards NJ, Rawlinson TA, Ramos Lopez F, Roobsoong W, Ellis KJ, Cho JS, Aunin E, Otto TD, ... Reid AJ, et al. Controlled human malaria infection with a clone of Plasmodium vivax with high quality genome assembly. Jci Insight. PMID 34609964 DOI: 10.1172/jci.insight.152465  0.44
2021 Milne K, Ivens A, Reid AJ, Lotkowska ME, O'Toole A, Sankaranarayanan G, Munoz Sandoval D, Nahrendorf W, Regnault C, Edwards NJ, Silk SE, Payne RO, Minassian AM, Venkatraman N, Sanders MJ, et al. Mapping immune variation and gene switching in naive hosts infected with . Elife. 10. PMID 33648633 DOI: 10.7554/eLife.62800  0.635
2020 Harrison TE, Reid AJ, Cunningham D, Langhorne J, Higgins MK. Structure of the -interspersed repeat proteins of the malaria parasite. Proceedings of the National Academy of Sciences of the United States of America. PMID 33257570 DOI: 10.1073/pnas.2016775117  0.406
2020 Aunin E, Böhme U, Sanderson T, Simons ND, Goldberg TL, Ting N, Chapman CA, Newbold CI, Berriman M, Reid AJ. Genomic and transcriptomic evidence for descent from Plasmodium and loss of blood schizogony in Hepatocystis parasites from naturally infected red colobus monkeys. Plos Pathogens. 16: e1008717. PMID 32745123 DOI: 10.1371/Journal.Ppat.1008717  0.665
2019 Howick VM, Russell AJC, Andrews T, Heaton H, Reid AJ, Natarajan K, Butungi H, Metcalf T, Verzier LH, Rayner JC, Berriman M, Herren JK, Billker O, Hemberg M, Talman AM, et al. The Malaria Cell Atlas: Single parasite transcriptomes across the complete life cycle. Science (New York, N.Y.). 365. PMID 31439762 DOI: 10.1126/Science.Aaw2619  0.63
2019 Bediako Y, Adams R, Reid AJ, Valletta JJ, Ndungu FM, Sodenkamp J, Mwacharo J, Ngoi JM, Kimani D, Kai O, Wambua J, Nyangweso G, de Villiers EP, Sanders M, Lotkowska ME, et al. Repeated clinical malaria episodes are associated with modification of the immune system in children. Bmc Medicine. 17: 60. PMID 30862316 DOI: 10.1186/S12916-019-1292-Y  0.491
2019 Duque-Correa MA, Karp NA, McCarthy C, Forman S, Goulding D, Sankaranarayanan G, Jenkins TP, Reid AJ, Cambridge EL, Ballesteros Reviriego C, Müller W, Cantacessi C, Dougan G, et al. Exclusive dependence of IL-10Rα signalling on intestinal microbiota homeostasis and control of whipworm infection. Plos Pathogens. 15: e1007265. PMID 30640950 DOI: 10.1371/Journal.Ppat.1007265  0.417
2018 Lin JW, Reid AJ, Cunningham D, Böhme U, Tumwine I, Keller-Mclaughlin S, Sanders M, Berriman M, Langhorne J. Genomic and transcriptomic comparisons of closely related malaria parasites differing in virulence and sequestration pattern. Wellcome Open Research. 3: 142. PMID 30542666 DOI: 10.12688/wellcomeopenres.14797.1  0.644
2018 Otto TD, Böhme U, Sanders M, Reid A, Bruske EI, Duffy CW, Bull PC, Pearson RD, Abdi A, Dimonte S, Stewart LB, Campino S, Kekre M, Hamilton WL, Claessens A, et al. Long read assemblies of geographically dispersed isolates reveal highly structured subtelomeres. Wellcome Open Research. 3: 52. PMID 29862326 DOI: 10.12688/wellcomeopenres.14571.1  0.533
2018 Reid AJ, Talman AM, Bennett HM, Gomes AR, Sanders MJ, Illingworth CJR, Billker O, Berriman M, Lawniczak MK. Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites. Elife. 7. PMID 29580379 DOI: 10.7554/Elife.33105  0.591
2017 Brugat T, Reid AJ, Lin JW, Cunningham D, Tumwine I, Kushinga G, McLaughlin S, Spence P, Böhme U, Sanders M, Conteh S, Bushell E, Metcalf T, Billker O, Duffy PE, et al. Antibody-independent mechanisms regulate the establishment of chronic Plasmodium infection. Nature Microbiology. 2: 16276. PMID 28165471 DOI: 10.1038/Nmicrobiol.2016.276  0.581
2017 Rutledge GG, Böhme U, Sanders M, Reid AJ, Cotton JA, Maiga-Ascofare O, Djimdé AA, Apinjoh TO, Amenga-Etego L, Manske M, Barnwell JW, Renaud F, Ollomo B, Prugnolle F, Anstey NM, et al. Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution. Nature. PMID 28117441 DOI: 10.1038/Nature21038  0.616
2016 Hunt VL, Tsai IJ, Coghlan A, Reid AJ, Holroyd N, Foth BJ, Tracey A, Cotton JA, Stanley EJ, Beasley H, Bennett HM, Brooks K, Harsha B, Kajitani R, Kulkarni A, et al. The genomic basis of parasitism in the Strongyloides clade of nematodes. Nature Genetics. PMID 26829753 DOI: 10.1038/Ng.3495  0.65
2015 Reid AJ. Large, rapidly evolving gene families are at the forefront of host-parasite interactions in Apicomplexa. Parasitology. 142: S57-70. PMID 25257746 DOI: 10.1017/S0031182014001528  0.399
2014 Thorpe P, Mantelin S, Cock PJ, Blok VC, Coke MC, Eves-van den Akker S, Guzeeva E, Lilley CJ, Smant G, Reid AJ, Wright KM, Urwin PE, Jones JT. Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida. Bmc Genomics. 15: 923. PMID 25342461 DOI: 10.1186/1471-2164-15-923  0.364
2014 Reid AJ, Blake DP, Ansari HR, Billington K, Browne HP, Bryant J, Dunn M, Hung SS, Kawahara F, Miranda-Saavedra D, Malas TB, Mourier T, Naghra H, Nair M, Otto TD, et al. Genomic analysis of the causative agents of coccidiosis in domestic chickens. Genome Research. 24: 1676-85. PMID 25015382 DOI: 10.1101/Gr.168955.113  0.639
2014 Foth BJ, Tsai IJ, Reid AJ, Bancroft AJ, Nichol S, Tracey A, Holroyd N, Cotton JA, Stanley EJ, Zarowiecki M, Liu JZ, Huckvale T, Cooper PJ, Grencis RK, Berriman M. Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction. Nature Genetics. 46: 693-700. PMID 24929830 DOI: 10.1038/Ng.3010  0.645
2014 Jackson AP, Otto TD, Darby A, Ramaprasad A, Xia D, Echaide IE, Farber M, Gahlot S, Gamble J, Gupta D, Gupta Y, Jackson L, Malandrin L, Malas TB, Moussa E, ... ... Reid AJ, et al. The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction. Nucleic Acids Research. 42: 7113-31. PMID 24799432 DOI: 10.1093/Nar/Gku322  0.619
2014 Reid AJ, Jones JT. Bioinformatic analysis of expression data to identify effector candidates. Methods in Molecular Biology (Clifton, N.J.). 1127: 17-27. PMID 24643549 DOI: 10.1007/978-1-62703-986-4_2  0.406
2014 Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok V, Cock PJ, Eves-van den Akker S, Holroyd N, Hunt M, Mantelin S, Naghra H, et al. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology. 15: R43. PMID 24580726 DOI: 10.1186/Gb-2014-15-3-R43  0.596
2013 Laing R, Kikuchi T, Martinelli A, Tsai IJ, Beech RN, Redman E, Holroyd N, Bartley DJ, Beasley H, Britton C, Curran D, Devaney E, Gilabert A, Hunt M, Jackson F, ... ... Reid AJ, et al. The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. Genome Biology. 14: R88. PMID 23985316 DOI: 10.1186/Gb-2013-14-8-R88  0.625
2013 Spence PJ, Jarra W, Lévy P, Reid AJ, Chappell L, Brugat T, Sanders M, Berriman M, Langhorne J. Vector transmission regulates immune control of Plasmodium virulence Nature. 498: 228-231. PMID 23719378 DOI: 10.1038/Nature12231  0.613
2013 Reid AJ, Berriman M. Genes involved in host-parasite interactions can be revealed by their correlated expression. Nucleic Acids Research. 41: 1508-18. PMID 23275547 DOI: 10.1093/Nar/Gks1340  0.601
2013 Oakes RD, Kurian D, Bromley E, Ward C, Lal K, Blake DP, Reid AJ, Pain A, Sinden RE, Wastling JM, Tomley FM. The rhoptry proteome of Eimeria tenella sporozoites. International Journal For Parasitology. 43: 181-8. PMID 23262303 DOI: 10.1016/j.ijpara.2012.10.024  0.316
2012 Lawton J, Brugat T, Yan YX, Reid AJ, Böhme U, Otto TD, Pain A, Jackson A, Berriman M, Cunningham D, Preiser P, Langhorne J. Characterization and gene expression analysis of the cir multi-gene family of Plasmodium chabaudi chabaudi (AS). Bmc Genomics. 13: 125. PMID 22458863 DOI: 10.1186/1471-2164-13-125  0.605
2012 Reid AJ, Vermont SJ, Cotton JA, Harris D, Hill-Cawthorne GA, Könen-Waisman S, Latham SM, Mourier T, Norton R, Quail MA, Sanders M, Shanmugam D, Sohal A, Wasmuth JD, Brunk B, et al. Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy. Plos Pathogens. 8: e1002567. PMID 22457617 DOI: 10.1371/Journal.Ppat.1002567  0.657
2011 Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJ, Otto TD, Hunt M, Reid AJ, Sanchez-Flores A, Tsuchihara K, et al. Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. Plos Pathogens. 7: e1002219. PMID 21909270 DOI: 10.1371/Journal.Ppat.1002219  0.621
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