| Year |
Citation |
Score |
| 2019 |
Schloss PD. Reintroducing mothur: 10 years later. Applied and Environmental Microbiology. PMID 31704678 DOI: 10.1128/Aem.02343-19 |
0.363 |
|
| 2019 |
Sze MA, Topçuoğlu BD, Lesniak NA, Ruffin MT, Schloss PD. Fecal Short-Chain Fatty Acids Are Not Predictive of Colonic Tumor Status and Cannot Be Predicted Based on Bacterial Community Structure. Mbio. 10. PMID 31266879 DOI: 10.1128/Mbio.01454-19 |
0.336 |
|
| 2018 |
Hannigan GD, Duhaime MB, Ruffin MT, Koumpouras CC, Schloss PD. Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer Virome. Mbio. 9. PMID 30459201 DOI: 10.1128/Mbio.02248-18 |
0.307 |
|
| 2018 |
Sze MA, Schloss PD. Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors. Mbio. 9. PMID 29871916 DOI: 10.1128/Mbio.00630-18 |
0.333 |
|
| 2018 |
Hannigan GD, Duhaime MB, Koutra D, Schloss PD. Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome. Plos Computational Biology. 14: e1006099. PMID 29668682 DOI: 10.1371/Journal.Pcbi.1006099 |
0.315 |
|
| 2018 |
Flynn KJ, Ruffin MT, Turgeon DK, Schloss PD. Spatial variation of the native colon microbiota in healthy adults. Cancer Prevention Research (Philadelphia, Pa.). PMID 29636352 DOI: 10.1158/1940-6207.Capr-17-0370 |
0.352 |
|
| 2018 |
Doherty MK, Ding T, Koumpouras C, Telesco SE, Monast C, Das A, Brodmerkel C, Schloss PD. Fecal Microbiota Signatures Are Associated with Response to Ustekinumab Therapy among Crohn's Disease Patients. Mbio. 9. PMID 29535202 DOI: 10.1128/Mbio.02120-17 |
0.315 |
|
| 2016 |
Abdul Majid S, Graw MF, Chatziefthimiou AD, Nguyen H, Richer R, Louge M, Sultan AA, Schloss P, Hay AG. Microbial Characterization of Qatari Barchan Sand Dunes. Plos One. 11: e0161836. PMID 27655399 DOI: 10.1371/Journal.Pone.0161836 |
0.404 |
|
| 2016 |
Schloss PD, Girard RA, Martin T, Edwards J, Thrash JC. Status of the Archaeal and Bacterial Census: an Update. Mbio. 7. PMID 27190214 DOI: 10.1128/Mbio.00201-16 |
0.377 |
|
| 2016 |
Schloss PD, Jenior ML, Koumpouras CC, Westcott SL, Highlander SK. Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system. Peerj. 4: e1869. PMID 27069806 DOI: 10.7717/Peerj.1869 |
0.345 |
|
| 2016 |
Baxter NT, Ruffin MT, Rogers MA, Schloss PD. Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions. Genome Medicine. 8: 37. PMID 27056827 DOI: 10.1186/S13073-016-0290-3 |
0.31 |
|
| 2015 |
Westcott SL, Schloss PD. De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units. Peerj. 3: e1487. PMID 26664811 DOI: 10.7717/Peerj.1487 |
0.313 |
|
| 2015 |
Schubert AM, Sinani H, Schloss PD. Antibiotic-Induced Alterations of the Murine Gut Microbiota and Subsequent Effects on Colonization Resistance against Clostridium difficile. Mbio. 6: e00974. PMID 26173701 DOI: 10.1128/Mbio.00974-15 |
0.322 |
|
| 2015 |
Carmody LA, Zhao J, Kalikin LM, LeBar W, Simon RH, Venkataraman A, Schmidt TM, Abdo Z, Schloss PD, LiPuma JJ. The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation. Microbiome. 3: 12. PMID 25834733 DOI: 10.1186/S40168-015-0074-9 |
0.305 |
|
| 2015 |
Baxter NT, Wan JJ, Schubert AM, Jenior ML, Myers P, Schloss PD. Intra- and interindividual variations mask interspecies variation in the microbiota of sympatric peromyscus populations. Applied and Environmental Microbiology. 81: 396-404. PMID 25362056 DOI: 10.1128/Aem.02303-14 |
0.387 |
|
| 2014 |
Zackular JP, Rogers MA, Ruffin MT, Schloss PD. The human gut microbiome as a screening tool for colorectal cancer. Cancer Prevention Research (Philadelphia, Pa.). 7: 1112-21. PMID 25104642 DOI: 10.1158/1940-6207.Capr-14-0129 |
0.31 |
|
| 2014 |
Baxter NT, Zackular JP, Chen GY, Schloss PD. Structure of the gut microbiome following colonization with human feces determines colonic tumor burden. Microbiome. 2: 20. PMID 24967088 DOI: 10.1186/2049-2618-2-20 |
0.301 |
|
| 2014 |
Schubert AM, Rogers MA, Ring C, Mogle J, Petrosino JP, Young VB, Aronoff DM, Schloss PD. Microbiome data distinguish patients with Clostridium difficile infection and non-C. difficile-associated diarrhea from healthy controls. Mbio. 5: e01021-14. PMID 24803517 DOI: 10.1128/Mbio.01021-14 |
0.363 |
|
| 2014 |
Ding T, Schloss PD. Dynamics and associations of microbial community types across the human body. Nature. 509: 357-60. PMID 24739969 DOI: 10.1038/Nature13178 |
0.359 |
|
| 2014 |
Marino S, Baxter NT, Huffnagle GB, Petrosino JF, Schloss PD. Mathematical modeling of primary succession of murine intestinal microbiota. Proceedings of the National Academy of Sciences of the United States of America. 111: 439-44. PMID 24367073 DOI: 10.1073/Pnas.1311322111 |
0.37 |
|
| 2013 |
Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, et al. Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis. Microbiome. 1: 9. PMID 24451366 DOI: 10.1186/2049-2618-1-9 |
0.354 |
|
| 2013 |
Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Applied and Environmental Microbiology. 79: 5112-20. PMID 23793624 DOI: 10.1128/Aem.01043-13 |
0.381 |
|
| 2013 |
Morris A, Beck JM, Schloss PD, Campbell TB, Crothers K, Curtis JL, Flores SC, Fontenot AP, Ghedin E, Huang L, Jablonski K, Kleerup E, Lynch SV, Sodergren E, Twigg H, et al. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. American Journal of Respiratory and Critical Care Medicine. 187: 1067-75. PMID 23491408 DOI: 10.1164/Rccm.201210-1913Oc |
0.305 |
|
| 2013 |
Schloss PD. Secondary structure improves OTU assignments of 16S rRNA gene sequences. The Isme Journal. 7: 457-60. PMID 23018771 DOI: 10.1038/Ismej.2012.102 |
0.314 |
|
| 2012 |
Gevers D, Pop M, Schloss PD, Huttenhower C. Bioinformatics for the Human Microbiome Project. Plos Computational Biology. 8: e1002779. PMID 23209389 DOI: 10.1371/Journal.Pcbi.1002779 |
0.359 |
|
| 2012 |
Ward DV, Gevers D, Giannoukos G, Earl AM, Methé BA, Sodergren E, Feldgarden M, Ciulla DM, Tabbaa D, Arze C, Appelbaum E, Aird L, Anderson S, Ayvaz T, Belter E, ... ... Schloss PD, et al. Evaluation of 16s rDNA-based community profiling for human microbiome research Plos One. 7. PMID 22720093 DOI: 10.1371/Journal.Pone.0039315 |
0.37 |
|
| 2012 |
Abubucker S, Segata N, Goll J, Schubert AM, Izard J, Cantarel BL, Rodriguez-Mueller B, Zucker J, Thiagarajan M, Henrissat B, White O, Kelley ST, Methé B, Schloss PD, Gevers D, et al. Metabolic reconstruction for metagenomic data and its application to the human microbiome. Plos Computational Biology. 8: e1002358. PMID 22719234 DOI: 10.1371/Journal.Pcbi.1002358 |
0.387 |
|
| 2012 |
Lesniewski RA, Jain S, Anantharaman K, Schloss PD, Dick GJ. The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs. The Isme Journal. 6: 2257-68. PMID 22695860 DOI: 10.1038/Ismej.2012.63 |
0.324 |
|
| 2012 |
Schloss PD, Schubert AM, Zackular JP, Iverson KD, Young VB, Petrosino JF. Stabilization of the murine gut microbiome following weaning. Gut Microbes. 3: 383-93. PMID 22688727 DOI: 10.4161/Gmic.21008 |
0.376 |
|
| 2012 |
Zhao J, Schloss PD, Kalikin LM, Carmody LA, Foster BK, Petrosino JF, Cavalcoli JD, VanDevanter DR, Murray S, Li JZ, Young VB, LiPuma JJ. Decade-long bacterial community dynamics in cystic fibrosis airways. Proceedings of the National Academy of Sciences of the United States of America. 109: 5809-14. PMID 22451929 DOI: 10.1073/Pnas.1120577109 |
0.39 |
|
| 2012 |
Zhao J, Carmody LA, Kalikin LM, Li J, Petrosino JF, Schloss PD, Young VB, LiPuma JJ. Impact of enhanced Staphylococcus DNA extraction on microbial community measures in cystic fibrosis sputum. Plos One. 7: e33127. PMID 22412992 DOI: 10.1371/Journal.Pone.0033127 |
0.348 |
|
| 2011 |
Schloss PD, Gevers D, Westcott SL. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. Plos One. 6: e27310. PMID 22194782 DOI: 10.1371/Journal.Pone.0027310 |
0.377 |
|
| 2011 |
Zhao J, Li J, Schloss PD, Kalikin LM, Raymond TA, Petrosino JF, Young VB, LiPuma JJ. Effect of sample storage conditions on culture-independent bacterial community measures in cystic fibrosis sputum specimens. Journal of Clinical Microbiology. 49: 3717-8. PMID 21865433 DOI: 10.1128/Jcm.01189-11 |
0.352 |
|
| 2011 |
Reeves AE, Theriot CM, Bergin IL, Huffnagle GB, Schloss PD, Young VB. The interplay between microbiome dynamics and pathogen dynamics in a murine model of Clostridium difficile Infection. Gut Microbes. 2: 145-58. PMID 21804357 DOI: 10.4161/Gmic.2.3.16333 |
0.331 |
|
| 2011 |
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Schloss PD, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823 |
0.339 |
|
| 2011 |
Schloss PD, Westcott SL. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Applied and Environmental Microbiology. 77: 3219-26. PMID 21421784 DOI: 10.1128/Aem.02810-10 |
0.348 |
|
| 2010 |
Schloss PD. The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies. Plos Computational Biology. 6: e1000844. PMID 20628621 DOI: 10.1371/Journal.Pcbi.1000844 |
0.357 |
|
| 2010 |
Robinson CJ, Schloss P, Ramos Y, Raffa K, Handelsman J. Robustness of the bacterial community in the cabbage white butterfly larval midgut. Microbial Ecology. 59: 199-211. PMID 19924467 DOI: 10.1007/S00248-009-9595-8 |
0.388 |
|
| 2009 |
Schloss PD. A high-throughput DNA sequence aligner for microbial ecology studies. Plos One. 4: e8230. PMID 20011594 DOI: 10.1371/Journal.Pone.0008230 |
0.318 |
|
| 2009 |
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology. 75: 7537-41. PMID 19801464 DOI: 10.1128/Aem.01541-09 |
0.374 |
|
| 2008 |
Vasanthakumar A, Handelsman J, Schloss PD, Bauer LS, Raffa KF. Gut microbiota of an invasive subcortical beetle, Agrilus planipennis Fairmaire, across various life stages. Environmental Entomology. 37: 1344-53. PMID 19036215 DOI: 10.1603/0046-225X(2008)37[1344:Gmoais]2.0.Co;2 |
0.383 |
|
| 2008 |
Elshahed MS, Youssef NH, Spain AM, Sheik C, Najar FZ, Sukharnikov LO, Roe BA, Davis JP, Schloss PD, Bailey VL, Krumholz LR. Novelty and uniqueness patterns of rare members of the soil biosphere Applied and Environmental Microbiology. 74: 5422-5428. PMID 18606799 DOI: 10.1128/Aem.00410-08 |
0.343 |
|
| 2008 |
Schloss PD. Evaluating different approaches that test whether microbial communities have the same structure. The Isme Journal. 2: 265-75. PMID 18239608 DOI: 10.1038/Ismej.2008.5 |
0.39 |
|
| 2008 |
Schloss PD, Handelsman J. A statistical toolbox for metagenomics: assessing functional diversity in microbial communities. Bmc Bioinformatics. 9: 34. PMID 18215273 DOI: 10.1186/1471-2105-9-34 |
0.401 |
|
| 2007 |
Schloss PD, Handelsman J. The last word: books as a statistical metaphor for microbial communities. Annual Review of Microbiology. 61: 23-34. PMID 17439361 DOI: 10.1146/Annurev.Micro.61.011507.151712 |
0.364 |
|
| 2006 |
Curtis TP, Head IM, Lunn M, Woodcock S, Schloss PD, Sloan WT. What is the extent of prokaryotic diversity? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 2023-37. PMID 17028084 DOI: 10.1098/Rstb.2006.1921 |
0.357 |
|
| 2006 |
Schloss PD, Handelsman J. Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Applied and Environmental Microbiology. 72: 6773-9. PMID 17021230 DOI: 10.1128/Aem.00474-06 |
0.37 |
|
| 2006 |
Schloss PD, Handelsman J. Toward a census of bacteria in soil. Plos Computational Biology. 2: e92. PMID 16848637 DOI: 10.1371/Journal.Pcbi.0020092 |
0.383 |
|
| 2006 |
Schloss PD, Handelsman J. Introducing TreeClimber, a test to compare microbial community structures. Applied and Environmental Microbiology. 72: 2379-84. PMID 16597933 DOI: 10.1128/Aem.72.4.2379-2384.2006 |
0.364 |
|
| 2006 |
Schloss PD, Delalibera I, Handelsman J, Raffa KF. Bacteria associated with the guts of two wood-boring beetles: Anoplophora glabripennis and Saperda vestita (Cerambycidae) Environmental Entomology. 35: 625-629. DOI: 10.1603/0046-225X-35.3.625 |
0.389 |
|
| 2006 |
Vasanthakumar A, Delalibera I, Handelsman J, Klepzig KD, Schloss PD, Raffa KF. Characterization of Gut-Associated Bacteria in Larvae and Adults of the Southern Pine Beetle, Dendroctonus frontalis Zimmermann Environmental Entomology. 35: 1710-1717. DOI: 10.1603/0046-225X(2006)35[1710:Cogbil]2.0.Co;2 |
0.382 |
|
| 2005 |
Hansgate AM, Schloss PD, Hay AG, Walker LP. Molecular characterization of fungal community dynamics in the initial stages of composting. Fems Microbiology Ecology. 51: 209-14. PMID 16329869 DOI: 10.1016/J.Femsec.2004.08.009 |
0.597 |
|
| 2005 |
Schloss PD, Handelsman J. Metagenomics for studying unculturable microorganisms: cutting the Gordian knot. Genome Biology. 6: 229. PMID 16086859 DOI: 10.1186/Gb-2005-6-8-229 |
0.351 |
|
| 2005 |
Schloss PD, Handelsman J. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology. 71: 1501-6. PMID 15746353 DOI: 10.1128/Aem.71.3.1501-1506.2005 |
0.372 |
|
| 2005 |
Schloss PD, Hay AG, Wilson DB, Gossett JM, Walker LP. Quantifying bacterial population dynamics in compost using 16S rRNA gene probes. Applied Microbiology and Biotechnology. 66: 457-63. PMID 15368083 DOI: 10.1007/S00253-004-1727-Y |
0.556 |
|
| 2004 |
Schloss PD, Handelsman J. Status of the microbial census. Microbiology and Molecular Biology Reviews : Mmbr. 68: 686-91. PMID 15590780 DOI: 10.1128/Mmbr.68.4.686-691.2004 |
0.367 |
|
| 2004 |
Riesenfeld CS, Schloss PD, Handelsman J. Metagenomics: genomic analysis of microbial communities. Annual Review of Genetics. 38: 525-52. PMID 15568985 DOI: 10.1146/Annurev.Genet.38.072902.091216 |
0.334 |
|
| 2004 |
Schloss PD, Larget BR, Handelsman J. Integration of microbial ecology and statistics: a test to compare gene libraries. Applied and Environmental Microbiology. 70: 5485-92. PMID 15345436 DOI: 10.1128/Aem.70.9.5485-5492.2004 |
0.403 |
|
| 2003 |
Schloss PD, Hay AG, Wilson DB, Walker LP. Tracking temporal changes of bacterial community fingerprints during the initial stages of composting. Fems Microbiology Ecology. 46: 1-9. PMID 19719577 DOI: 10.1016/S0168-6496(03)00153-3 |
0.586 |
|
| 2003 |
Schloss PD, Handelsman J. Biotechnological prospects from metagenomics. Current Opinion in Biotechnology. 14: 303-10. PMID 12849784 DOI: 10.1016/S0958-1669(03)00067-3 |
0.316 |
|
| 2003 |
Schloss PD, Hay AG, Wilson DB, Walker LP. Molecular assessment of inoculum efficacy and process reproducibility in composting using ARISA Transactions of the American Society of Agricultural Engineers. 46: 919-927. DOI: 10.13031/2013.13568 |
0.603 |
|
| 2001 |
Schloss PD, Walker LP. Assessment and improvement of process variable reproducibility in composting reactors Transactions of the American Society of Agricultural Engineers. 44: 1021-1030. DOI: 10.13031/2013.6223 |
0.558 |
|
| 2001 |
Schloss PD, Walker LP. Assessment and improvement of process variable reproducibility in composting reactors Transactions of the American Society of Agricultural Engineers. 44: 1021-1030. |
0.47 |
|
| 2000 |
Schloss PD, Walker LP. Measurement of process performance and variability in inoculated composting reactors using ANOVA and power analysis Process Biochemistry. 35: 931-942. DOI: 10.1016/S0032-9592(99)00156-9 |
0.546 |
|
| 2000 |
Schloss PD, Chaves B, Walker LP. The use of the analysis of variance to assess the influence of mixing during composting Process Biochemistry. 35: 675-684. DOI: 10.1016/S0032-9592(99)00117-X |
0.538 |
|
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