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James Hemp, Ph.D. - Publications

Affiliations: 
University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
theoretical chemistry
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Murali R, Hemp J, Gennis RB. Evolution of quinol oxidation within the heme‑copper oxidoreductase superfamily. Biochimica Et Biophysica Acta. Bioenergetics. 148907. PMID 35944661 DOI: 10.1016/j.bbabio.2022.148907  0.332
2021 Murali R, Gennis RB, Hemp J. Evolution of the cytochrome bd oxygen reductase superfamily and the function of CydAA' in Archaea. The Isme Journal. PMID 34145390 DOI: 10.1038/s41396-021-01019-4  0.354
2019 Soo RM, Hemp J, Hugenholtz P. The evolution of photosynthesis and aerobic respiration in the cyanobacteria. Free Radical Biology & Medicine. PMID 30930297 DOI: 10.1016/J.Freeradbiomed.2019.03.029  0.398
2019 Vuono DC, Read RW, Hemp J, Sullivan BW, Arnone JA, Neveux I, Blank RR, Loney E, Miceli D, Winkler MH, Chakraborty R, Stahl DA, Grzymski JJ. Resource Concentration Modulates the Fate of Dissimilated Nitrogen in a Dual-Pathway Actinobacterium. Frontiers in Microbiology. 10: 3. PMID 30723459 DOI: 10.3389/Fmicb.2019.00003  0.317
2018 Chadwick GL, Hemp J, Fischer WW, Orphan VJ. Convergent evolution of unusual complex I homologs with increased proton pumping capacity: energetic and ecological implications. The Isme Journal. PMID 29991762 DOI: 10.1038/S41396-018-0210-1  0.346
2018 Ward LM, Hemp J, Shih PM, McGlynn SE, Fischer WW. Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer. Frontiers in Microbiology. 9: 260. PMID 29515543 DOI: 10.3389/Fmicb.2018.00260  0.36
2017 Soo RM, Hemp J, Parks DH, Fischer WW, Hugenholtz P. On the origins of oxygenic photosynthesis and aerobic respiration in Cyanobacteria. Science (New York, N.Y.). 355: 1436-1440. PMID 28360330 DOI: 10.1126/Science.Aal3794  0.396
2017 Maker A, Hemp J, Pace LA, Ward LM, Fischer WW. Draft Genome Sequence of Hydrogenibacillus schlegelii MA48, a Deep-Branching Member of the Bacilli Class of Firmicutes. Genome Announcements. 5. PMID 28104644 DOI: 10.1128/Genomea.00380-16  0.394
2016 Shih PM, Hemp J, Ward LM, Matzke NJ, Fischer WW. Crown group Oxyphotobacteria postdate the rise of oxygen. Geobiology. PMID 27392323 DOI: 10.1111/Gbi.12200  0.356
2016 Hemp J, Lücker S, Schott J, Pace LA, Johnson JE, Schink B, Daims H, Fischer WW. Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification. The Isme Journal. PMID 27093047 DOI: 10.1038/Ismej.2016.56  0.401
2016 Fischer WW, Hemp J, Valentine JS. How did life survive Earth's great oxygenation? Current Opinion in Chemical Biology. 31: 166-178. PMID 27043270 DOI: 10.1016/J.Cbpa.2016.03.013  0.352
2016 Fischer WW, Hemp J, Johnson JE. Evolution of Oxygenic Photosynthesis Annual Review of Earth and Planetary Sciences. 44: 647-683. DOI: 10.1146/Annurev-Earth-060313-054810  0.376
2015 Hemp J, Ward LM, Pace LA, Fischer WW. Draft Genome Sequence of Levilinea saccharolytica KIBI-1, a Member of the Chloroflexi Class Anaerolineae. Genome Announcements. 3. PMID 26586894 DOI: 10.1128/Genomea.01357-15  0.366
2015 Ward LM, Hemp J, Pace LA, Fischer WW. Draft Genome Sequence of Leptolinea tardivitalis YMTK-2, a Mesophilic Anaerobe from the Chloroflexi Class Anaerolineae. Genome Announcements. 3. PMID 26586893 DOI: 10.1128/Genomea.01356-15  0.359
2015 Pace LA, Hemp J, Ward LM, Fischer WW. Draft Genome of Thermanaerothrix daxensis GNS-1, a Thermophilic Facultative Anaerobe from the Chloroflexi Class Anaerolineae. Genome Announcements. 3. PMID 26586891 DOI: 10.1128/Genomea.01354-15  0.353
2015 Hemp J, Ward LM, Pace LA, Fischer WW. Draft Genome Sequence of Ornatilinea apprima P3M-1, an Anaerobic Member of the Chloroflexi Class Anaerolineae. Genome Announcements. 3. PMID 26586890 DOI: 10.1128/Genomea.01353-15  0.359
2015 Ward LM, Hemp J, Pace LA, Fischer WW. Draft Genome Sequence of Herpetosiphon geysericola GC-42, a Nonphototrophic Member of the Chloroflexi Class Chloroflexia. Genome Announcements. 3. PMID 26586889 DOI: 10.1128/Genomea.01352-15  0.357
2015 Hemp J, Ward LM, Pace LA, Fischer WW. Draft Genome Sequence of Ardenticatena maritima 110S, a Thermophilic Nitrate- and Iron-Reducing Member of the Chloroflexi Class Ardenticatenia. Genome Announcements. 3. PMID 26586887 DOI: 10.1128/Genomea.01347-15  0.385
2015 Fischer WW, Hemp J, Johnson JE. Manganese and the Evolution of Photosynthesis. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. PMID 26017176 DOI: 10.1007/S11084-015-9442-5  0.373
2013 Schurig-Briccio LA, Venkatakrishnan P, Hemp J, Bricio C, Berenguer J, Gennis RB. Characterization of the nitric oxide reductase from Thermus thermophilus. Proceedings of the National Academy of Sciences of the United States of America. 110: 12613-8. PMID 23858452 DOI: 10.1073/Pnas.1301731110  0.391
2012 Ouyang H, Han H, Roh JH, Hemp J, Hosler JP, Gennis RB. Functional importance of a pair of conserved glutamic acid residues and of Ca(2+) binding in the cbb(3)-type oxygen reductases from Rhodobacter sphaeroides and Vibrio cholerae. Biochemistry. 51: 7290-6. PMID 22913716 DOI: 10.1021/Bi3006847  0.342
2012 Chang HY, Choi SK, Vakkasoglu AS, Chen Y, Hemp J, Fee JA, Gennis RB. Exploring the proton pump and exit pathway for pumped protons in cytochrome ba3 from Thermus thermophilus. Proceedings of the National Academy of Sciences of the United States of America. 109: 5259-64. PMID 22431640 DOI: 10.1073/Pnas.1107345109  0.339
2012 Mahinthichaichan P, Hemp J, Gennis RB, Tajkhorshid E. Probing Gas Diffusion Pathways in Cytochrome C Oxidase with Explicit and Implicit Ligand Samplings Biophysical Journal. 102: 713a. DOI: 10.1016/J.Bpj.2011.11.3870  0.311
2012 Hemp J, Pace LA, Gennis RB. The heme-copper oxidoreductase superfamily: Diversity, evolution and ecology Biochimica Et Biophysica Acta (Bba) - Bioenergetics. 1817: S107-S108. DOI: 10.1016/J.Bbabio.2012.06.290  0.305
2011 Han H, Hemp J, Pace LA, Ouyang H, Ganesan K, Roh JH, Daldal F, Blanke SR, Gennis RB. Adaptation of aerobic respiration to low O2 environments. Proceedings of the National Academy of Sciences of the United States of America. 108: 14109-14. PMID 21844375 DOI: 10.1073/Pnas.1018958108  0.399
2011 Borisov VB, Gennis RB, Hemp J, Verkhovsky MI. The cytochrome bd respiratory oxygen reductases. Biochimica Et Biophysica Acta. 1807: 1398-413. PMID 21756872 DOI: 10.1016/J.Bbabio.2011.06.016  0.438
2010 Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, Brochier-Armanet C, Chain PS, Chan PP, Gollabgir A, Hemp J, Hügler M, Karr EA, Könneke M, Shin M, et al. Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proceedings of the National Academy of Sciences of the United States of America. 107: 8818-23. PMID 20421470 DOI: 10.1073/Pnas.0913533107  0.378
2009 Chang HY, Hemp J, Chen Y, Fee JA, Gennis RB. The cytochrome ba3 oxygen reductase from Thermus thermophilus uses a single input channel for proton delivery to the active site and for proton pumping. Proceedings of the National Academy of Sciences of the United States of America. 106: 16169-73. PMID 19805275 DOI: 10.1073/Pnas.0905264106  0.432
2008 Hemp J, Gennis RB. Diversity of the heme-copper superfamily in archaea: insights from genomics and structural modeling. Results and Problems in Cell Differentiation. 45: 1-31. PMID 18183358 DOI: 10.1007/400_2007_046  0.456
2008 Sievert SM, Scott KM, Klotz MG, Chain PS, Hauser LJ, Hemp J, Hügler M, Land M, Lapidus A, Larimer FW, Lucas S, Malfatti SA, Meyer F, Paulsen IT, Ren Q, et al. Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. Applied and Environmental Microbiology. 74: 1145-56. PMID 18065616 DOI: 10.1128/Aem.01844-07  0.385
2007 Hemp J, Han H, Roh JH, Kaplan S, Martinez TJ, Gennis RB. Comparative genomics and site-directed mutagenesis support the existence of only one input channel for protons in the C-family (cbb3 oxidase) of heme-copper oxygen reductases. Biochemistry. 46: 9963-72. PMID 17676874 DOI: 10.1021/Bi700659Y  0.522
2007 Yang K, Zhang J, Vakkasoglu AS, Hielscher R, Osborne JP, Hemp J, Miyoshi H, Hellwig P, Gennis RB. Glutamate 107 in subunit I of the cytochrome bd quinol oxidase from Escherichia coli is protonated and near the heme d/heme b595 binuclear center. Biochemistry. 46: 3270-8. PMID 17305364 DOI: 10.1021/Bi061946+  0.383
2006 Hemp J, Robinson DE, Ganesan KB, Martinez TJ, Kelleher NL, Gennis RB. Evolutionary migration of a post-translationally modified active-site residue in the proton-pumping heme-copper oxygen reductases. Biochemistry. 45: 15405-10. PMID 17176062 DOI: 10.1021/Bi062026U  0.555
2005 Hemp J, Christian C, Barquera B, Gennis RB, Martínez TJ. Helix switching of a key active-site residue in the cytochrome cbb3 oxidases. Biochemistry. 44: 10766-75. PMID 16086579 DOI: 10.1021/Bi050464F  0.537
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