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Haiwei Luo, Ph.D. - Publications

Affiliations: 
2010 Biological Sciences University of South Carolina, Columbia, SC 
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zhang H, Hellweger FL, Luo H. Genome reduction occurred in early Prochlorococcus with an unusually low effective population size. The Isme Journal. 18. PMID 38365237 DOI: 10.1093/ismejo/wrad035  0.382
2023 Nowinski B, Feng X, Preston CM, Birch JM, Luo H, Whitman WB, Moran MA. Ecological divergence of syntopic marine bacterial species is shaped by gene content and expression. The Isme Journal. PMID 36871069 DOI: 10.1038/s41396-023-01390-4  0.346
2022 Chu X, Wang X, Cheung LS, Feng X, Ang P, Lee SY, Crowe SA, Luo H. Coastal Transient Niches Shape the Microdiversity Pattern of a Bacterioplankton Population with Reduced Genomes. Mbio. e0057122. PMID 35880883 DOI: 10.1128/mbio.00571-22  0.434
2021 Lin X, McNichol J, Chu X, Qian Y, Luo H. Cryptic niche differentiation of novel sediment ecotypes of Rugeria pomeroyi correlates with nitrate respiration. Environmental Microbiology. PMID 34964547 DOI: 10.1111/1462-2920.15882  0.317
2021 Chen Z, Wang X, Song Y, Zeng Q, Zhang Y, Luo H. Prochlorococcus have low global mutation rate and small effective population size. Nature Ecology & Evolution. PMID 34949817 DOI: 10.1038/s41559-021-01591-0  0.335
2021 Zhang H, Sun Y, Zeng Q, Crowe SA, Luo H. Snowball Earth, population bottleneck and evolution. Proceedings. Biological Sciences. 288: 20211956. PMID 34784770 DOI: 10.1098/rspb.2021.1956  0.362
2021 Feng X, Chu X, Qian Y, Henson MW, Lanclos VC, Qin F, Barnes S, Zhao Y, Thrash JC, Luo H. Mechanisms driving genome reduction of a novel Roseobacter lineage. The Isme Journal. PMID 34145391 DOI: 10.1038/s41396-021-01036-3  0.419
2021 Luo D, Wang X, Feng X, Tian M, Wang S, Tang SL, Ang P, Yan A, Luo H. Population differentiation of Rhodobacteraceae along with coral compartments. The Isme Journal. PMID 34017056 DOI: 10.1038/s41396-021-01009-6  0.387
2021 Tao J, Wang S, Liao T, Luo H. Evolutionary origin and ecological implication of a unique nif island in free-living Bradyrhizobium lineages. The Isme Journal. PMID 33990706 DOI: 10.1038/s41396-021-01002-z  0.369
2021 Gu J, Wang X, Ma X, Sun Y, Xiao X, Luo H. Unexpectedly high mutation rate of a deep-sea hyperthermophilic anaerobic archaeon. The Isme Journal. PMID 33452477 DOI: 10.1038/s41396-020-00888-5  0.312
2020 Chu X, Li S, Wang S, Luo D, Luo H. Gene loss through pseudogenization contributes to the ecological diversification of a generalist Roseobacter lineage. The Isme Journal. PMID 32999421 DOI: 10.1038/s41396-020-00790-0  0.404
2020 Wang X, Zhang Y, Ren M, Xia T, Chu X, Liu C, Lin X, Huang Y, Chen Z, Yan A, Luo H. Cryptic speciation of a pelagic Roseobacter population varying at a few thousand nucleotide sites. The Isme Journal. PMID 32814868 DOI: 10.1038/S41396-020-00743-7  0.446
2020 Wang S, Meade A, Lam HM, Luo H. Evolutionary Timeline and Genomic Plasticity Underlying the Lifestyle Diversity in . Msystems. 5. PMID 32665328 DOI: 10.1128/mSystems.00438-20  0.354
2020 Xue CX, Zhang H, Lin HY, Sun Y, Luo D, Huang Y, Zhang XH, Luo H. Ancestral Niche Separation and Evolutionary Rate Differentiation Between Sister Marine Flavobacteria Lineages. Environmental Microbiology. PMID 32390223 DOI: 10.1111/1462-2920.15065  0.377
2019 Zhang Z, Chen F, Chu X, Zhang H, Luo H, Qin F, Zhai Z, Yang M, Sun J, Zhao Y. Diverse, Abundant, and Novel Viruses Infecting the Marine RCA Lineage. Msystems. 4. PMID 31848303 DOI: 10.1128/mSystems.00494-19  0.35
2019 Luo H, Tolar BB, Swan BK, Zhang CL, Stepanauskas R, Moran MA, Hollibaugh JT. Correction: Single-cell genomics shedding light on marine Thaumarchaeota diversification. The Isme Journal. PMID 31748708 DOI: 10.1038/S41396-019-0558-X  0.362
2019 Ren M, Feng X, Huang Y, Wang H, Hu Z, Clingenpeel S, Swan BK, Fonseca MM, Posada D, Stepanauskas R, Hollibaugh JT, Foster PG, Woyke T, Luo H. Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution. The Isme Journal. PMID 31024152 DOI: 10.1038/S41396-019-0418-8  0.324
2018 Zhang H, Yoshizawa S, Sun Y, Huang Y, Chu X, González JM, Pinhassi J, Luo H. Repeated Evolutionary Transitions of Flavobacteria from Marine to Non-Marine Habitats. Environmental Microbiology. PMID 30565818 DOI: 10.1111/1462-2920.14509  0.416
2018 Sun Y, Luo H. Homologous Recombination in Core Genomes Facilitates Marine Bacterial Adaptation. Applied and Environmental Microbiology. PMID 29572211 DOI: 10.1128/Aem.02545-17  0.543
2018 Hellweger FL, Huang Y, Luo H. Carbon limitation drives GC content evolution of a marine bacterium in an individual-based genome-scale model. The Isme Journal. PMID 29330536 DOI: 10.1038/S41396-017-0023-7  0.459
2018 Long H, Sung W, Kucukyildirim S, Williams E, Miller SF, Guo W, Patterson C, Gregory C, Strauss C, Stone C, Berne C, Kysela D, Shoemaker WR, Muscarella ME, Luo H, et al. Evolutionary determinants of genome-wide nucleotide composition. Nature Ecology & Evolution. PMID 29292397 DOI: 10.1038/S41559-017-0425-Y  0.431
2017 Xie W, Luo H, Murugapiran SK, Dodsworth JA, Chen S, Sun Y, Hedlund BP, Wang P, Fang H, Deng M, Zhang C. Localized high abundance of Marine group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation. Environmental Microbiology. PMID 29235710 DOI: 10.1111/1462-2920.14004  0.363
2017 Luo H, Huang Y, Stepanauskas R, Tang J. Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes. Nature Microbiology. 2: 17091. PMID 28604700 DOI: 10.1038/Nmicrobiol.2017.91  0.49
2017 Bullock HA, Luo H, Whitman WB. Evolution of Dimethylsulfoniopropionate Metabolism in Marine Phytoplankton and Bacteria. Frontiers in Microbiology. 8: 637. PMID 28469605 DOI: 10.3389/Fmicb.2017.00637  0.365
2017 Sun Y, Powell KE, Sung W, Lynch M, Moran MA, Luo H. Spontaneous mutations of a model heterotrophic marine bacterium. The Isme Journal. PMID 28323279 DOI: 10.1038/Ismej.2017.20  0.403
2017 Sun Y, Zhang Y, Hollibaugh JT, Luo H. Ecotype Diversification of an Abundant Roseobacter Lineage. Environmental Microbiology. PMID 28142225 DOI: 10.1111/1462-2920.13683  0.357
2016 Zhang W, Ding W, Yang B, Tian R, Gu S, Luo H, Qian PY. Genomic and Transcriptomic Evidence for Carbohydrate Consumption among Microorganisms in a Cold Seep Brine Pool. Frontiers in Microbiology. 7: 1825. PMID 27895636 DOI: 10.3389/Fmicb.2016.01825  0.519
2016 Luo H, Sun Y, Hollibaugh JT, Moran MA. Low Genome Content Diversity of Marine Planktonic Thaumarchaeota. Environmental Microbiology Reports. PMID 27120311 DOI: 10.1111/1758-2229.12417  0.52
2016 Zhang Y, Sun Y, Jiao N, Stepanauskas R, Luo H. Ecological Genomics of the Uncultivated Marine Roseobacter Lineage CHAB-I-5. Applied and Environmental Microbiology. PMID 26826224 DOI: 10.1128/Aem.03678-15  0.502
2015 Luo H, Thompson LR, Stingl U, Hughes AL. Selection maintains low genomic GC content in marine SAR11 lineages. Molecular Biology and Evolution. PMID 26116859 DOI: 10.1093/Molbev/Msv149  0.606
2015 Luo H, Moran MA. How do divergent ecological strategies emerge among marine bacterioplankton lineages? Trends in Microbiology. 23: 577-84. PMID 26051014 DOI: 10.1016/J.Tim.2015.05.004  0.483
2015 Labonté JM, Swan BK, Poulos B, Luo H, Koren S, Hallam SJ, Sullivan MB, Woyke T, Eric Wommack K, Stepanauskas R. Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton. The Isme Journal. PMID 25848873 DOI: 10.1038/Ismej.2015.48  0.402
2015 Luo H. The use of evolutionary approaches to understand single cell genomes. Frontiers in Microbiology. 6: 174. PMID 25806025 DOI: 10.3389/Fmicb.2015.00191  0.47
2015 Durham BP, Sharma S, Luo H, Smith CB, Amin SA, Bender SJ, Dearth SP, Van Mooy BA, Campagna SR, Kujawinski EB, Armbrust EV, Moran MA. Cryptic carbon and sulfur cycling between surface ocean plankton. Proceedings of the National Academy of Sciences of the United States of America. 112: 453-7. PMID 25548163 DOI: 10.1073/Pnas.1413137112  0.358
2015 Luo H. Evolutionary origin of a streamlined marine bacterioplankton lineage. The Isme Journal. 9: 1423-33. PMID 25431989 DOI: 10.1038/Ismej.2014.227  0.445
2014 Luo H, Moran MA. Evolutionary ecology of the marine Roseobacter clade. Microbiology and Molecular Biology Reviews : Mmbr. 78: 573-87. PMID 25428935 DOI: 10.1128/Mmbr.00020-14  0.369
2014 Durham BP, Grote J, Whittaker KA, Bender SJ, Luo H, Grim SL, Brown JM, Casey JR, Dron A, Florez-Leiva L, Krupke A, Luria CM, Mine AH, Nigro OD, Pather S, et al. Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome. Standards in Genomic Sciences. 9: 632-45. PMID 25197450 DOI: 10.4056/Sigs.4998989  0.477
2014 Lin MF, Kitahara MV, Luo H, Tracey D, Geller J, Fukami H, Miller DJ, Chen CA. Mitochondrial genome rearrangements in the scleractinia/corallimorpharia complex: implications for coral phylogeny. Genome Biology and Evolution. 6: 1086-95. PMID 24769753 DOI: 10.1093/Gbe/Evu084  0.453
2014 Luo H, Swan BK, Stepanauskas R, Hughes AL, Moran MA. Comparing effective population sizes of dominant marine alphaproteobacteria lineages. Environmental Microbiology Reports. 6: 167-72. PMID 24596290 DOI: 10.1111/1758-2229.12129  0.54
2014 Luo H, Swan BK, Stepanauskas R, Hughes AL, Moran MA. Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters. The Isme Journal. 8: 1428-39. PMID 24451207 DOI: 10.1038/Ismej.2013.248  0.615
2014 Luo H, Tolar BB, Swan BK, Zhang CL, Stepanauskas R, Ann Moran M, Hollibaugh JT. Single-cell genomics shedding light on marine Thaumarchaeota diversification Isme Journal. 8: 732-736. PMID 24196320 DOI: 10.1038/Ismej.2013.202  0.452
2013 Luo H, Moran MA. Assembly-free metagenomic analysis reveals new metabolic capabilities in surface ocean bacterioplankton. Environmental Microbiology Reports. 5: 686-96. PMID 24115619 DOI: 10.1111/1758-2229.12068  0.399
2013 Luo H, Csuros M, Hughes AL, Moran MA. Evolution of divergent life history strategies in marine alphaproteobacteria. Mbio. 4. PMID 23839216 DOI: 10.1128/Mbio.00373-13  0.623
2013 Swan BK, Tupper B, Sczyrba A, Lauro FM, Martinez-Garcia M, González JM, Luo H, Wright JJ, Landry ZC, Hanson NW, Thompson BP, Poulton NJ, Schwientek P, Acinas SG, Giovannoni SJ, et al. Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean. Proceedings of the National Academy of Sciences of the United States of America. 110: 11463-8. PMID 23801761 DOI: 10.1073/Pnas.1304246110  0.516
2013 Akram N, Palovaara J, Forsberg J, Lindh MV, Milton DL, Luo H, González JM, Pinhassi J. Regulation of proteorhodopsin gene expression by nutrient limitation in the marine bacterium Vibrio sp. AND4. Environmental Microbiology. 15: 1400-15. PMID 23379752 DOI: 10.1111/1462-2920.12085  0.325
2012 Luo H, Hughes AL. d(N)/d(S) does not show positive selection drives separation of polar-tropical SAR11 populations. Molecular Systems Biology. 8: 625. PMID 23169001 DOI: 10.1038/Msb.2012.58  0.509
2012 Luo H, Arndt W, Zhang Y, Shi G, Alekseyev MA, Tang J, Hughes AL, Friedman R. Phylogenetic analysis of genome rearrangements among five mammalian orders. Molecular Phylogenetics and Evolution. 65: 871-82. PMID 22929217 DOI: 10.1016/J.Ympev.2012.08.008  0.678
2012 Luo H. Predicted protein subcellular localization in dominant surface ocean bacterioplankton. Applied and Environmental Microbiology. 78: 6550-7. PMID 22773648 DOI: 10.1128/Aem.01406-12  0.394
2012 Luo H, Löytynoja A, Moran MA. Genome content of uncultivated marine Roseobacters in the surface ocean Environmental Microbiology. 14: 41-51. PMID 21854517 DOI: 10.1111/J.1462-2920.2011.02528.X  0.5
2011 Luo H, Friedman R, Tang J, Hughes AL. Genome reduction by deletion of paralogs in the marine cyanobacterium Prochlorococcus. Molecular Biology and Evolution. 28: 2751-60. PMID 21531921 DOI: 10.1093/Molbev/Msr081  0.677
2011 Luo H, Tang J, Friedman R, Hughes AL. Ongoing purifying selection on intergenic spacers in group A streptococcus. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 343-8. PMID 21115137 DOI: 10.1016/J.Meegid.2010.11.005  0.666
2011 Luo H, Zhang H, Long RA, Benner R. Depth distributions of alkaline phosphatase and phosphonate utilization genes in the North Pacific Subtropical Gyre Aquatic Microbial Ecology. 62: 61-69. DOI: 10.3354/Ame01458  0.314
2010 Shi J, Zhang Y, Luo H, Tang J. Using jackknife to assess the quality of gene order phylogenies. Bmc Bioinformatics. 11: 168. PMID 20370914 DOI: 10.1186/1471-2105-11-168  0.347
2009 Luo H, Benner R, Long RA, Hu J. Subcellular localization of marine bacterial alkaline phosphatases. Proceedings of the National Academy of Sciences of the United States of America. 106: 21219-23. PMID 19926862 DOI: 10.1073/Pnas.0907586106  0.338
2009 Luo H, Sun Z, Arndt W, Shi J, Friedman R, Tang J. Gene order phylogeny and the evolution of methanogens. Plos One. 4: e6069. PMID 19562076 DOI: 10.1371/Journal.Pone.0006069  0.569
2008 Luo H, Shi J, Arndt W, Tang J, Friedman R. Gene order phylogeny of the genus Prochlorococcus. Plos One. 3: e3837. PMID 19050756 DOI: 10.1371/Journal.Pone.0003837  0.577
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