| Year |
Citation |
Score |
| 2024 |
Chen LG, Lan T, Zhang S, Zhao M, Luo G, Gao Y, Zhang Y, Du Q, Lu H, Li B, Jiao B, Hu Z, Ma Y, Zhao Q, Wang Y, ... ... Dai J, et al. A designer synthetic chromosome fragment functions in moss. Nature Plants. PMID 38278952 DOI: 10.1038/s41477-023-01595-7 |
0.324 |
|
| 2023 |
Zhang W, Lazar-Stefanita L, Yamashita H, Shen MJ, Mitchell LA, Kurasawa H, Lobzaev E, Fanfani V, Haase MAB, Sun X, Jiang Q, Goldberg GW, Ichikawa DM, Lauer SL, McCulloch LH, ... ... Dai J, et al. Manipulating the 3D organization of the largest synthetic yeast chromosome. Molecular Cell. PMID 37944526 DOI: 10.1016/j.molcel.2023.10.015 |
0.304 |
|
| 2021 |
Jiang S, Luo Z, Dai J. Use YeastFab to Construct Genetic Parts and Multicomponent Pathways for Metabolic Engineering. Methods in Molecular Biology (Clifton, N.J.). 2196: 167-180. PMID 32889720 DOI: 10.1007/978-1-0716-0868-5_13 |
0.332 |
|
| 2021 |
Luo Z, Jiang S, Dai J. Chromosomal Rearrangements of Synthetic Yeast by SCRaMbLE. Methods in Molecular Biology (Clifton, N.J.). 2196: 153-165. PMID 32889719 DOI: 10.1007/978-1-0716-0868-5_12 |
0.368 |
|
| 2020 |
Swidah R, Auxillos J, Liu W, Jones S, Chan TF, Dai J, Cai Y. SCRaMbLE-in: A Fast and Efficient Method to Diversify and Improve the Yields of Heterologous Pathways in Synthetic Yeast. Methods in Molecular Biology (Clifton, N.J.). 2205: 305-327. PMID 32809206 DOI: 10.1007/978-1-0716-0908-8_17 |
0.453 |
|
| 2020 |
Dai J, Boeke JD, Luo Z, Jiang S, Cai Y. Sc3.0: revamping and minimizing the yeast genome. Genome Biology. 21: 205. PMID 32791980 DOI: 10.1186/S13059-020-02130-Z |
0.377 |
|
| 2020 |
Lu Z, Fu T, Li T, Liu Y, Zhang S, Li J, Dai J, Koonin EV, Li G, Chu H, Li M. Coevolution of Eukaryote-like Vps4 and ESCRT-III Subunits in the Asgard Archaea. Mbio. 11. PMID 32430468 DOI: 10.1128/Mbio.00417-20 |
0.378 |
|
| 2020 |
Zhang J, Luo J, Chen J, Dai J, Montell C. The Role of Y Chromosome Genes in Male Fertility in . Genetics. PMID 32404399 DOI: 10.1534/Genetics.120.303324 |
0.352 |
|
| 2020 |
Luo Z, Hoffmann SA, Jiang S, Cai Y, Dai J. Probing eukaryotic genome functions with synthetic chromosomes. Experimental Cell Research. 111936. PMID 32165165 DOI: 10.1016/J.Yexcr.2020.111936 |
0.41 |
|
| 2019 |
Lin Y, Zou X, Zheng Y, Cai YP, Dai J. Improving chromosome synthesis with a semi-quantitative phenotypic assay and refined assembly strategy. Acs Synthetic Biology. PMID 31532633 DOI: 10.1021/Acssynbio.8B00505 |
0.408 |
|
| 2019 |
Jiang Q, Zhang W, Liu C, Lin Y, Wu Q, Dai J. Dissecting PCNA function with a systematically designed mutant library in yeast. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 31281030 DOI: 10.1016/J.Jgg.2019.03.014 |
0.369 |
|
| 2019 |
Dai J. Investigating loss of heterozygosity in a SCRaMbLEd yeast genome. Science China. Life Sciences. PMID 30927172 DOI: 10.1007/S11427-019-9517-5 |
0.356 |
|
| 2019 |
Auxillos J, Garcia-Ruiz E, Jones S, Li T, Jiang S, Dai J, Cai Y. Multiplex genome engineering for optimizing bio-production in Saccharomyces cerevisiae. Biochemistry. PMID 30817136 DOI: 10.1021/Acs.Biochem.8B01086 |
0.32 |
|
| 2018 |
Zhang W, Zhang X, Xue Z, Li Y, Ma Q, Ren X, Zhang J, Yang S, Yang L, Wu M, Ren M, Xi R, Wu Z, Liu JL, Matunis E, ... Dai J, et al. Probing the Function of Metazoan Histones with a Systematic Library of H3 and H4 Mutants. Developmental Cell. PMID 30595536 DOI: 10.1016/J.Devcel.2018.11.047 |
0.38 |
|
| 2018 |
Luo Z, Yang Q, Geng B, Jiang S, Yang S, Li X, Cai Y, Dai J. Whole genome engineering by synthesis. Science China. Life Sciences. PMID 30465231 DOI: 10.1007/S11427-018-9403-Y |
0.376 |
|
| 2018 |
Lv X, Liu J, Qin Y, Liu Y, Jin M, Dai J, Chua BT, Yang H, Li P. Identification of gene products that control lipid droplet size in yeast using a high-throughput quantitative image analysis. Biochimica Et Biophysica Acta. Molecular and Cell Biology of Lipids. PMID 30414449 DOI: 10.1016/J.Bbalip.2018.11.001 |
0.32 |
|
| 2018 |
Garcia-Ruiz E, Auxillos J, Li T, Dai J, Cai Y. YeastFab: High-Throughput Genetic Parts Construction, Measurement, and Pathway Engineering in Yeast. Methods in Enzymology. 608: 277-306. PMID 30173765 DOI: 10.1016/Bs.Mie.2018.05.003 |
0.329 |
|
| 2018 |
Li T, Chen X, Cai Y, Dai J. Artificial Protein Scaffold System (AProSS): An Efficient Method to Optimize Exogenous Metabolic Pathways in Saccharomyces cerevisiae. Metabolic Engineering. PMID 30010058 DOI: 10.1016/J.Ymben.2018.07.006 |
0.366 |
|
| 2018 |
Cheng L, Liu C, Jiang SY, Hou S, Huang JG, Chen ZQ, Sun Y, Qi H, Jiang HW, Wang J, Zhou YM, Czajkowsky DM, Dai JB, Tao SC. Cell Lysate Microarray for Mapping the Network of Genetic Regulators for Histone Marks. Molecular & Cellular Proteomics : McP. PMID 29871872 DOI: 10.1074/Mcp.Ra117.000550 |
0.391 |
|
| 2018 |
Liu Y, Yang F, Li S, Dai J, Deng H. Glutaredoxin Deletion Shortens Chronological Life span in Saccharomyces Cerevisiae via ROS Mediated Ras/PKA Activation. Journal of Proteome Research. PMID 29790350 DOI: 10.1021/Acs.Jproteome.8B00012 |
0.32 |
|
| 2018 |
Liu W, Luo Z, Wang Y, Pham NT, Tuck L, Pérez-Pi I, Liu L, Shen Y, French C, Auer M, Marles-Wright J, Dai J, Cai Y. Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods. Nature Communications. 9: 1936. PMID 29789543 DOI: 10.1038/S41467-018-04254-0 |
0.396 |
|
| 2018 |
Luo Z, Wang L, Wang Y, Zhang W, Guo Y, Shen Y, Jiang L, Wu Q, Zhang C, Cai Y, Dai J. Identifying and characterizing SCRaMbLEd synthetic yeast using ReSCuES. Nature Communications. 9: 1930. PMID 29789541 DOI: 10.1038/S41467-017-00806-Y |
0.343 |
|
| 2018 |
Schindler D, Dai J, Cai Y. Synthetic genomics: a new venture to dissect genome fundamentals and engineer new functions. Current Opinion in Chemical Biology. 46: 56-62. PMID 29751161 DOI: 10.1016/J.Cbpa.2018.04.002 |
0.372 |
|
| 2018 |
Hou S, Qin Q, Dai J. Wicket: a versatile tool for the integration and optimization of exogenous pathways in Saccharomyces cerevisiae. Acs Synthetic Biology. PMID 29474063 DOI: 10.1021/Acssynbio.7B00391 |
0.417 |
|
| 2017 |
Cai Y, Dai J. Corrigendum: Methods to Synthesize Large DNA Fragments for a Synthetic Yeast Genome. Cold Spring Harbor Protocols. 2017: pdb.corr103473. PMID 29196596 DOI: 10.1101/Pdb.Corr103473 |
0.37 |
|
| 2017 |
Huang H, Luo Z, Qi S, Huang J, Xu P, Wang X, Gao L, Li F, Wang J, Zhao W, Gu W, Chen Z, Dai L, Dai J, Zhao Y. Landscape of the regulatory elements for lysine 2-hydroxyisobutyrylation pathway. Cell Research. PMID 29192674 DOI: 10.1038/Cr.2017.149 |
0.385 |
|
| 2017 |
Xie ZX, Liu D, Li BZ, Zhao M, Zeng BX, Wu Y, Shen Y, Lin T, Yang P, Dai J, Cai Y, Yang H, Yuan YJ. Design and chemical synthesis of eukaryotic chromosomes. Chemical Society Reviews. PMID 29094136 DOI: 10.1039/C7Cs00208D |
0.388 |
|
| 2017 |
Jiang S, Liu Y, Wang A, Qin Y, Luo M, Wu Q, Boeke JD, Dai J. Construction of Comprehensive Dosage-Matching Core Histone Mutant Libraries for Saccharomyces cerevisiae. Genetics. PMID 29084817 DOI: 10.1534/Genetics.117.300450 |
0.412 |
|
| 2017 |
Jiang S, Liu Y, Xu C, Wang Y, Gong J, Shen Y, Wu Q, Boeke JD, Dai J. Dissecting Nucleosome Function with a Comprehensive Histone H2A and H2B Mutant Library. G3 (Bethesda, Md.). PMID 29038170 DOI: 10.1534/G3.117.300252 |
0.369 |
|
| 2017 |
Luo Z, Dai J. [Synthetic genomics: the art of design and synthesis]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 33: 331-342. PMID 28941334 DOI: 10.13345/J.Cjb.160411 |
0.38 |
|
| 2017 |
Huang J, Luo Z, Ying W, Cao Q, Huang H, Dong J, Wu Q, Zhao Y, Qian X, Dai J. 2-Hydroxyisobutyrylation on histone H4K8 is regulated by glucose homeostasis in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. PMID 28768809 DOI: 10.1073/Pnas.1700796114 |
0.349 |
|
| 2017 |
Wu XL, Li BZ, Zhang WZ, Song K, Qi H, Dai JB, Yuan YJ. Genome-wide landscape of position effects on heterogeneous gene expression in Saccharomyces cerevisiae. Biotechnology For Biofuels. 10: 189. PMID 28729884 DOI: 10.1186/S13068-017-0872-3 |
0.359 |
|
| 2017 |
Mitchell LA, Wang A, Stracquadanio G, Kuang Z, Wang X, Yang K, Richardson S, Martin JA, Zhao Y, Walker R, Luo Y, Dai H, Dong K, Tang Z, Yang Y, ... ... Dai J, et al. Synthesis, debugging, and effects of synthetic chromosome consolidation: synVI and beyond. Science (New York, N.Y.). 355. PMID 28280154 DOI: 10.1126/Science.Aaf4831 |
0.379 |
|
| 2017 |
Shen Y, Wang Y, Chen T, Gao F, Gong J, Abramczyk D, Walker R, Zhao H, Chen S, Liu W, Luo Y, Müller CA, Paul-Dubois-Taine A, Alver B, Stracquadanio G, ... ... Dai J, et al. Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome. Science (New York, N.Y.). 355. PMID 28280153 DOI: 10.1126/Science.Aaf4791 |
0.365 |
|
| 2017 |
Wu Y, Li BZ, Zhao M, Mitchell LA, Xie ZX, Lin QH, Wang X, Xiao WH, Wang Y, Zhou X, Liu H, Li X, Ding MZ, Liu D, Zhang L, ... ... Dai J, et al. Bug mapping and fitness testing of chemically synthesized chromosome X. Science (New York, N.Y.). 355. PMID 28280152 DOI: 10.1126/Science.Aaf4706 |
0.369 |
|
| 2017 |
Mercy G, Mozziconacci J, Scolari VF, Yang K, Zhao G, Thierry A, Luo Y, Mitchell LA, Shen M, Shen Y, Walker R, Zhang W, Wu Y, Xie ZX, Luo Z, ... ... Dai J, et al. 3D organization of synthetic and scrambled chromosomes. Science (New York, N.Y.). 355. PMID 28280150 DOI: 10.1126/Science.Aaf4597 |
0.382 |
|
| 2017 |
Zhang W, Zhao G, Luo Z, Lin Y, Wang L, Guo Y, Wang A, Jiang S, Jiang Q, Gong J, Wang Y, Hou S, Huang J, Li T, Qin Y, ... ... Dai J, et al. Engineering the ribosomal DNA in a megabase synthetic chromosome. Science (New York, N.Y.). 355. PMID 28280149 DOI: 10.1126/Science.Aaf3981 |
0.376 |
|
| 2017 |
Cai Y, Dai J. Methods to Synthesize Large DNA Fragments for a Synthetic Yeast Genome. Cold Spring Harbor Protocols. 2017: pdb.prot080978. PMID 28250211 DOI: 10.1101/Pdb.Prot080978 |
0.333 |
|
| 2017 |
Yuan T, Guo Y, Dong J, Li T, Zhou T, Sun K, Zhang M, Wu Q, Xie Z, Cai Y, Cao L, Dai J. Construction, characterization and application of a genome-wide promoter library in Saccharomyces cerevisiae Frontiers of Chemical Science and Engineering. 11: 107-116. DOI: 10.1007/S11705-017-1621-7 |
0.376 |
|
| 2016 |
Xu P, Li C, Chen Z, Jiang S, Fan S, Wang J, Dai J, Zhu P, Chen Z. The NuA4 Core Complex Acetylates Nucleosomal Histone H4 through a Double Recognition Mechanism. Molecular Cell. PMID 27594449 DOI: 10.1016/J.Molcel.2016.07.024 |
0.322 |
|
| 2016 |
Wen K, Yang L, Xiong T, Di C, Ma D, Wu M, Xue Z, Zhang X, Long L, Zhang W, Zhang J, Bi X, Dai J, Zhang Q, Lu ZJ, et al. Critical roles of long noncoding RNAs in Drosophila spermatogenesis. Genome Research. PMID 27516619 DOI: 10.1101/Gr.199547.115 |
0.301 |
|
| 2016 |
Qin Y, Tan C, Lin J, Qin Q, He J, Wu Q, Cai Y, Chen Z, Dai J. EcoExpress - a highly efficient construction and expression of multicomponent protein complexes in Escherichia coli. Acs Synthetic Biology. PMID 27345099 DOI: 10.1021/Acssynbio.5B00291 |
0.303 |
|
| 2016 |
Martella A, Pollard SM, Dai J, Cai Y. Mammalian synthetic biology: time for Big MACs. Acs Synthetic Biology. PMID 27076218 DOI: 10.1021/Acssynbio.6B00074 |
0.394 |
|
| 2015 |
Liu K, Hou S, Dai J, Sun Z. PyMut: a web tool for overlapping gene loss-of-function mutation design. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 26661787 DOI: 10.1109/Tcbb.2015.2505290 |
0.315 |
|
| 2015 |
Yan D, Wang Y, Murakami T, Shen Y, Gong J, Jiang H, Smith DR, Pombert JF, Dai J, Wu Q. Erratum: Auxenochlorella protothecoides and Prototheca wickerhamii plastid genome sequences give insight into the origins of non-photosynthetic algae. Scientific Reports. 5: 17211. PMID 26656875 DOI: 10.1038/Srep17211 |
0.373 |
|
| 2015 |
Sen P, Dang W, Donahue G, Dai J, Dorsey J, Cao X, Liu W, Cao K, Perry R, Lee JY, Wasko BM, Carr DT, He C, Robison B, Wagner J, et al. H3K36 methylation promotes longevity by enhancing transcriptional fidelity. Genes & Development. 29: 1362-1376. PMID 26159996 DOI: 10.1101/Gad.263707.115 |
0.325 |
|
| 2015 |
Guo Y, Dong J, Zhou T, Auxillos J, Li T, Zhang W, Wang L, Shen Y, Luo Y, Zheng Y, Lin J, Chen GQ, Wu Q, Cai Y, Dai J. YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae. Nucleic Acids Research. PMID 25956650 DOI: 10.1093/Nar/Gkv464 |
0.365 |
|
| 2015 |
Simoneau A, Delgoshaie N, Celic I, Dai J, Abshiru N, Costantino S, Thibault P, Boeke JD, Verreault A, Wurtele H. Interplay between histone H3 lysine 56 deacetylation and chromatin modifiers in response to DNA damage. Genetics. 200: 185-205. PMID 25786853 DOI: 10.1534/Genetics.115.175919 |
0.374 |
|
| 2015 |
Wu C, Xiong W, Dai J, Wu Q. Genome-based metabolic mapping and 13C flux analysis reveal systematic properties of an oleaginous microalga Chlorella protothecoides. Plant Physiology. 167: 586-99. PMID 25511434 DOI: 10.1104/Pp.114.250688 |
0.318 |
|
| 2014 |
Zhao L, Dai J, Wu Q. Autophagy-like processes are involved in lipid droplet degradation in Auxenochlorella protothecoides during the heterotrophy-autotrophy transition. Frontiers in Plant Science. 5: 400. PMID 25177326 DOI: 10.3389/Fpls.2014.00400 |
0.363 |
|
| 2014 |
Wei W, Xin H, Roy B, Dai J, Miao Y, Gao G. Heritable genome editing with CRISPR/Cas9 in the silkworm, Bombyx mori. Plos One. 9: e101210. PMID 25013902 DOI: 10.1371/Journal.Pone.0101210 |
0.378 |
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| 2014 |
Gao C, Wang Y, Shen Y, Yan D, He X, Dai J, Wu Q. Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes. Bmc Genomics. 15: 582. PMID 25012212 DOI: 10.1186/1471-2164-15-582 |
0.407 |
|
| 2014 |
Zhang H, Li J, Hou S, Wang G, Jiang M, Sun C, Hu X, Zhuang F, Dai Z, Dai J, Xi JJ. Engineered TAL Effector modulators for the large-scale gain-of-function screening. Nucleic Acids Research. 42: e114. PMID 24939900 DOI: 10.1093/Nar/Gku535 |
0.361 |
|
| 2014 |
Xue Z, Ren M, Wu M, Dai J, Rong YS, Gao G. Efficient gene knock-out and knock-in with transgenic Cas9 in Drosophila. G3 (Bethesda, Md.). 4: 925-9. PMID 24657904 DOI: 10.1534/G3.114.010496 |
0.362 |
|
| 2013 |
Ng TM, Lenstra TL, Duggan N, Jiang S, Ceto S, Holstege FC, Dai J, Boeke JD, Biggins S. Kinetochore function and chromosome segregation rely on critical residues in histones H3 and H4 in budding yeast. Genetics. 195: 795-807. PMID 24037263 DOI: 10.1534/Genetics.113.152082 |
0.383 |
|
| 2012 |
Jiang Q, Zhao L, Dai J, Wu Q. Analysis of autophagy genes in microalgae: Chlorella as a potential model to study mechanism of autophagy. Plos One. 7: e41826. PMID 22848622 DOI: 10.1371/Journal.Pone.0041826 |
0.371 |
|
| 2012 |
Xie Z, Dai J, Dai L, Tan M, Cheng Z, Wu Y, Boeke JD, Zhao Y. Lysine succinylation and lysine malonylation in histones. Molecular & Cellular Proteomics : McP. 11: 100-7. PMID 22389435 DOI: 10.1074/Mcp.M111.015875 |
0.339 |
|
| 2012 |
Dai J, Boeke JD. Strain construction and screening methods for a yeast histone H3/H4 mutant library. Methods in Molecular Biology (Clifton, N.J.). 833: 1-14. PMID 22183584 DOI: 10.1007/978-1-61779-477-3_1 |
0.306 |
|
| 2011 |
Dymond JS, Richardson SM, Coombes CE, Babatz T, Muller H, Annaluru N, Blake WJ, Schwerzmann JW, Dai J, Lindstrom DL, Boeke AC, Gottschling DE, Chandrasegaran S, Bader JS, Boeke JD. Synthetic chromosome arms function in yeast and generate phenotypic diversity by design. Nature. 477: 471-6. PMID 21918511 DOI: 10.1038/Nature10403 |
0.438 |
|
| 2011 |
Peng C, Lu Z, Xie Z, Cheng Z, Chen Y, Tan M, Luo H, Zhang Y, He W, Yang K, Zwaans BM, Tishkoff D, Ho L, Lombard D, He TC, ... Dai J, et al. The first identification of lysine malonylation substrates and its regulatory enzyme. Molecular & Cellular Proteomics : McP. 10: M111.012658. PMID 21908771 DOI: 10.1074/Mcp.M111.012658 |
0.346 |
|
| 2011 |
Hyland EM, Molina H, Poorey K, Jie C, Xie Z, Dai J, Qian J, Bekiranov S, Auble DT, Pandey A, Boeke JD. An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae. Genes & Development. 25: 1306-19. PMID 21685365 DOI: 10.1101/Gad.2050311 |
0.359 |
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| 2010 |
Dai J, Hyland EM, Norris A, Boeke JD. Yin and Yang of histone H2B roles in silencing and longevity: a tale of two arginines. Genetics. 186: 813-28. PMID 20713692 DOI: 10.1534/Genetics.110.118489 |
0.321 |
|
| 2009 |
Huang H, Maertens AM, Hyland EM, Dai J, Norris A, Boeke JD, Bader JS. HistoneHits: a database for histone mutations and their phenotypes. Genome Research. 19: 674-81. PMID 19218532 DOI: 10.1101/Gr.083402.108 |
0.368 |
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| 2008 |
Dai J, Hyland EM, Yuan DS, Huang H, Bader JS, Boeke JD. Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants. Cell. 134: 1066-78. PMID 18805098 DOI: 10.1016/J.Cell.2008.07.019 |
0.379 |
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| 2007 |
Dai J, Xie W, Brady TL, Gao J, Voytas DF. Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin. Molecular Cell. 27: 289-99. PMID 17643377 DOI: 10.1016/J.Molcel.2007.06.010 |
0.637 |
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| 2003 |
Zhu Y, Dai J, Fuerst PG, Voytas DF. Controlling integration specificity of a yeast retrotransposon. Proceedings of the National Academy of Sciences of the United States of America. 100: 5891-5. PMID 12730380 DOI: 10.1073/Pnas.1036705100 |
0.742 |
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| 2000 |
Dai J, Wu Q, Wang R, Peng W, Shen G, Fu J. Molecular source of biomarkers by genetic engineering techniques Chinese Science Bulletin. 45: 1025-1030. DOI: 10.1007/Bf02884985 |
0.32 |
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