Stefanie Hartmann, Ph.D. - Publications

Affiliations: 
2001 University of Iowa, Iowa City, IA 
Area:
Ecology Biology, Botany Biology, Entomology Biology

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hartmann S, Preick M, Abelt S, Scheffel A, Hofreiter M. Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea. Bmc Research Notes. 13: 426. PMID 32912303 DOI: 10.1186/S13104-020-05254-4  0.445
2020 Hofreiter M, Hartmann S. Reconstructing protein-coding sequences from ancient DNA. Methods in Enzymology. 642: 21-33. PMID 32828254 DOI: 10.1016/Bs.Mie.2020.05.008  0.364
2020 Dennis AB, Ballesteros GI, Robin S, Schrader L, Bast J, Berghöfer J, Beukeboom LW, Belghazi M, Bretaudeau A, Buellesbach J, Cash E, Colinet D, Dumas Z, Errbii M, Falabella P, ... ... Hartmann S, et al. Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum. Bmc Genomics. 21: 376. PMID 32471448 DOI: 10.1186/S12864-020-6764-0  0.317
2020 Westbury MV, Hartmann S, Barlow A, Preick M, Ridush B, Nagel D, Rathgeber T, Ziegler R, Baryshnikov G, Sheng G, Ludwig A, Wiesel I, Dalen L, Bibi F, Werdelin L, et al. Hyena paleogenomes reveal a complex evolutionary history of cross-continental gene flow between spotted and cave hyena. Science Advances. 6: eaay0456. PMID 32201717 DOI: 10.1126/Sciadv.Aay0456  0.384
2020 Barlow A, Hartmann S, Gonzalez J, Hofreiter M, Paijmans JLA. Consensify: A Method for Generating Pseudohaploid Genome Sequences from Palaeogenomic Datasets with Reduced Error Rates. Genes. 11. PMID 31906474 DOI: 10.3390/Genes11010050  0.409
2019 Paraskevopoulou S, Dennis AB, Weithoff G, Hartmann S, Tiedemann R. Within species expressed genetic variability and gene expression response to different temperatures in the rotifer Brachionus calyciflorus sensu stricto. Plos One. 14: e0223134. PMID 31568501 DOI: 10.1371/Journal.Pone.0223134  0.393
2019 Sheng GL, Basler N, Ji XP, Paijmans JLA, Alberti F, Preick M, Hartmann S, Westbury MV, Yuan JX, Jablonski NG, Xenikoudakis G, Hou XD, Xiao B, Liu JH, Hofreiter M, et al. Paleogenome Reveals Genetic Contribution of Extinct Giant Panda to Extant Populations. Current Biology : Cb. PMID 31080081 DOI: 10.1016/J.Cub.2019.04.021  0.336
2018 Barlow A, Cahill JA, Hartmann S, Theunert C, Xenikoudakis G, Fortes GG, Paijmans JLA, Rabeder G, Frischauf C, Grandal-d'Anglade A, García-Vázquez A, Murtskhvaladze M, Saarma U, Anijalg P, Skrbinšek T, et al. Partial genomic survival of cave bears in living brown bears. Nature Ecology & Evolution. PMID 30150744 DOI: 10.1038/S41559-018-0654-8  0.42
2018 Autenrieth M, Hartmann S, Lah L, Roos A, Dennis AB, Tiedemann R. High quality whole genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena). Molecular Ecology Resources. PMID 30035363 DOI: 10.1111/1755-0998.12932  0.443
2018 Hilgers L, Hartmann S, Hofreiter M, von Rintelen T. Novel genes, ancient genes, and gene co-option contributed to the genetic basis of the radula, a molluscan innovation. Molecular Biology and Evolution. PMID 29672732 DOI: 10.1093/Molbev/Msy052  0.341
2018 Westbury MV, Hartmann S, Barlow A, Wiesel I, Leo V, Welch R, Parker DM, Sicks F, Ludwig A, Dalén L, Hofreiter M. Extended and continuous decline in effective population size results in low genomic diversity in the world's rarest hyena species, the brown hyena. Molecular Biology and Evolution. PMID 29528428 DOI: 10.1093/Molbev/Msy037  0.388
2017 Westbury M, Baleka S, Barlow A, Hartmann S, Paijmans JLA, Kramarz A, Forasiepi AM, Bond M, Gelfo JN, Reguero MA, López-Mendoza P, Taglioretti M, Scaglia F, Rinderknecht A, Jones W, et al. A mitogenomic timetree for Darwin's enigmatic South American mammal Macrauchenia patachonica. Nature Communications. 8: 15951. PMID 28654082 DOI: 10.1038/Ncomms15951  0.388
2017 Lah L, Löber U, Hsiang T, Hartmann S. A genomic comparison of putative pathogenicity-related gene families in five members of the Ophiostomatales with different lifestyles. Fungal Biology. 121: 234-252. PMID 28215351 DOI: 10.1016/J.Funbio.2016.12.002  0.44
2016 Węcek K, Hartmann S, Paijmans JL, Taron U, Xenikoudakis G, Cahill JA, Heintzman PD, Shapiro B, Baryshnikov G, Bunevich AN, Crees JJ, Dobosz R, Manaserian N, Okarma H, Tokarska M, et al. Complex admixture preceded and followed the extinction of wisent in the wild. Molecular Biology and Evolution. PMID 28007976 DOI: 10.1093/Molbev/Msw254  0.377
2015 Hartmann S, Hasenkamp N, Mayer J, Michaux J, Morand S, Mazzoni CJ, Roca AL, Greenwood AD. Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse. Bmc Genomics. 16: 613. PMID 26282858 DOI: 10.1186/S12864-015-1766-Z  0.429
2014 Schedina IM, Pfautsch S, Hartmann S, Dolgener N, Polgar A, Bianco PG, Tiedemann R, Ketmaier V. Isolation and characterization of eight microsatellite loci in the brook lamprey Lampetra planeri (Petromyzontiformes) using 454 sequence data. Journal of Fish Biology. 85: 960-4. PMID 25059996 DOI: 10.1111/Jfb.12470  0.36
2014 Zulawski M, Schulze G, Braginets R, Hartmann S, Schulze WX. The Arabidopsis Kinome: phylogeny and evolutionary insights into functional diversification. Bmc Genomics. 15: 548. PMID 24984858 DOI: 10.1186/1471-2164-15-548  0.328
2014 Schedina IM, Hartmann S, Groth D, Schlupp I, Tiedemann R. Comparative analysis of the gonadal transcriptomes of the all-female species Poecilia formosa and its maternal ancestor Poecilia mexicana. Bmc Research Notes. 7: 249. PMID 24742317 DOI: 10.1186/1756-0500-7-249  0.371
2013 Hill N, Leow A, Bleidorn C, Groth D, Tiedemann R, Selbig J, Hartmann S. Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information. Theory in Biosciences = Theorie in Den Biowissenschaften. 132: 93-104. PMID 23248024 DOI: 10.1007/S12064-012-0173-0  0.477
2013 Hartmann S, Mayer J, Mazzoni C, Greenwood AD. Retroviral diversity of laboratory and wild mice M. musculus domesticus Embnet.Journal. 19: 48. DOI: 10.14806/Ej.19.A.616  0.405
2012 Hartmann S, Helm C, Nickel B, Meyer M, Struck TH, Tiedemann R, Selbig J, Bleidorn C. Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data. Plos One. 7: e29843. PMID 22276131 DOI: 10.1371/Journal.Pone.0029843  0.448
2012 Bartel M, Hartmann S, Lehmann K, Postel K, Quesada H, Philipp EER, Heilmann K, Micheel B, Stuckas H. Identification of sperm proteins as candidate biomarkers for the analysis of reproductive isolation in Mytilus: A case study for the enkurin locus Marine Biology. 159: 2195-2207. DOI: 10.1007/S00227-012-2005-7  0.325
2011 Bonizzoni M, Bourjea J, Chen B, Crain BJ, Cui L, Fiorentino V, Hartmann S, Hendricks S, Ketmaier V, Ma X, Muths D, Pavesi L, Pfautsch S, Rieger MA, et al. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2011-31 May 2011. Molecular Ecology Resources. 11: 935-6. PMID 21777398 DOI: 10.1111/J.1755-0998.2011.03046.X  0.301
2011 Struck TH, Paul C, Hill N, Hartmann S, Hösel C, Kube M, Lieb B, Meyer A, Tiedemann R, Purschke G, Bleidorn C. Phylogenomic analyses unravel annelid evolution. Nature. 471: 95-8. PMID 21368831 DOI: 10.1038/Nature09864  0.369
2011 Burleigh JG, Bansal MS, Eulenstein O, Hartmann S, Wehe A, Vision TJ. Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees. Systematic Biology. 60: 117-25. PMID 21186249 DOI: 10.1093/Sysbio/Syq072  0.649
2010 Fiorentino V, Hartmann S, Pavesi L, Pfautsch S, Tiedemann R, Ketmaier V. Identification of thousands of microsatellite loci from 454 sequencing in non-model organisms F1000research. 1. DOI: 10.7490/F1000Research.198.1  0.38
2009 Bleidorn C, Podsiadlowski L, Zhong M, Eeckhaut I, Hartmann S, Halanych KM, Tiedemann R. On the phylogenetic position of Myzostomida: can 77 genes get it wrong? Bmc Evolutionary Biology. 9: 150. PMID 19570199 DOI: 10.1186/1471-2148-9-150  0.395
2009 Schröder C, Bleidorn C, Hartmann S, Tiedemann R. Occurrence of Can-SINEs and intron sequence evolution supports robust phylogeny of pinniped carnivores and their terrestrial relatives. Gene. 448: 221-6. PMID 19563867 DOI: 10.1016/J.Gene.2009.06.012  0.464
2009 Cheng F, Hartmann S, Gupta M, Ibrahim JG, Vision TJ. A hierarchical model for incomplete alignments in phylogenetic inference. Bioinformatics (Oxford, England). 25: 592-8. PMID 19147663 DOI: 10.1093/Bioinformatics/Btp015  0.656
2008 Groth D, Hartmann S, Panopoulou G, Poustka AJ, Hennig S. GOblet: annotation of anonymous sequence data with gene ontology and pathway terms. Journal of Integrative Bioinformatics. 5. PMID 20134064 DOI: 10.2390/Biecoll-Jib-2008-104  0.35
2008 Hartmann S, Vision TJ. Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment? Bmc Evolutionary Biology. 8: 95. PMID 18366758 DOI: 10.1186/1471-2148-8-95  0.665
2006 Hartmann S, Lu D, Phillips J, Vision TJ. Phytome: a platform for plant comparative genomics. Nucleic Acids Research. 34: D724-30. PMID 16381967 DOI: 10.1093/Nar/Gkj045  0.669
2003 Stegemann S, Hartmann S, Ruf S, Bock R. High-frequency gene transfer from the chloroplast genome to the nucleus. Proceedings of the National Academy of Sciences of the United States of America. 100: 8828-33. PMID 12817081 DOI: 10.1073/Pnas.1430924100  0.389
2002 Hartmann S, Nason JD, Bhattacharya D. Phylogenetic origins of Lophocereus (Cactaceae) and the senita cactus-senita moth pollination mutualism. American Journal of Botany. 89: 1085-92. PMID 21665708 DOI: 10.3732/Ajb.89.7.1085  0.591
2001 Hartmann S, Nason JD, Bhattacharya D. Extensive ribosomal DNA genic variation in the columnar cactus Lophocereus. Journal of Molecular Evolution. 53: 124-34. PMID 11479683 DOI: 10.1007/S002390010200  0.586
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