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Xiangqin Cui - Publications

Affiliations: 
Biostatistics University of Alabama, Birmingham, Birmingham, AL, United States 
Area:
Biostatistics Biology
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kim S, Park HJ, Cui X, Zhi D. Collective effects of long-range DNA methylations predict gene expressions and estimate phenotypes in cancer. Scientific Reports. 10: 3920. PMID 32127627 DOI: 10.1038/S41598-020-60845-2  0.303
2017 Peng Y, Yan S, Chen D, Cui X, Jiao K. Pdgfrb is a direct regulatory target of TGFβ signaling in atrioventricular cushion mesenchymal cells. Plos One. 12: e0175791. PMID 28426709 DOI: 10.1371/Journal.Pone.0175791  0.359
2015 Yang C, Bartolucci AA, Cui X. Multigroup Equivalence Analysis for High-Dimensional Expression Data. Cancer Informatics. 14: 253-263. PMID 26628859 DOI: 10.4137/Cin.S17304  0.322
2015 Mrug M, Zhou J, Yang C, Aronow BJ, Cui X, Schoeb TR, Siegal GP, Yoder BK, Guay-Woodford LM. Genetic and Informatic Analyses Implicate Kif12 as a Candidate Gene within the Mpkd2 Locus That Modulates Renal Cystic Disease Severity in the Cys1cpk Mouse. Plos One. 10: e0135678. PMID 26295839 DOI: 10.1371/Journal.Pone.0135678  0.347
2015 Plyler ZE, Hill AE, McAtee CW, Cui X, Moseley LA, Sorscher EJ. SNP Formation Bias in the Murine Genome Provides Evidence for Parallel Evolution. Genome Biology and Evolution. PMID 26253317 DOI: 10.1093/Gbe/Evv150  0.312
2015 Cui X, Yu S, Tamhane A, Causey ZL, Steg A, Danila MI, Reynolds RJ, Wang J, Wanzeck KC, Tang Q, Ledbetter SS, Redden DT, Johnson MR, Bridges SL. Simple regression for correcting ΔCt bias in RT-qPCR low-density array data normalization. Bmc Genomics. 16: 82. PMID 25888492 DOI: 10.1186/S12864-015-1274-1  0.397
2015 Cuna A, Halloran B, Faye-Petersen O, Kelly D, Crossman DK, Cui X, Pandit K, Kaminski N, Bhattacharya S, Ahmad A, Mariani TJ, Ambalavanan N. Alterations in Gene Expression and DNA Methylation during Murine and Human Lung Alveolar Septation. American Journal of Respiratory Cell and Molecular Biology. 53: 60-73. PMID 25387348 DOI: 10.1542/Peds.137.Supplement_3.434A  0.359
2014 Boddu R, Yang C, O'Connor AK, Hendrickson RC, Boone B, Cui X, Garcia-Gonzalez M, Igarashi P, Onuchic LF, Germino GG, Guay-Woodford LM. Intragenic motifs regulate the transcriptional complexity of Pkhd1/PKHD1. Journal of Molecular Medicine (Berlin, Germany). 92: 1045-56. PMID 24984783 DOI: 10.1007/S00109-014-1185-7  0.358
2014 Qiu J, Qi Y, Cui X. Applying shrinkage variance estimators to the TOST test in high dimensional settings. Statistical Applications in Genetics and Molecular Biology. 13: 323-41. PMID 24864302 DOI: 10.1515/Sagmb-2013-0045  0.394
2014 Yan Q, Tiwari HK, Yi N, Lin WY, Gao G, Lou XY, Cui X, Liu N. Kernel-machine testing coupled with a rank-truncation method for genetic pathway analysis. Genetic Epidemiology. 38: 447-56. PMID 24849109 DOI: 10.1002/Gepi.21813  0.339
2013 Thalacker-Mercer A, Stec M, Cui X, Cross J, Windham S, Bamman M. Cluster analysis reveals differential transcript profiles associated with resistance training-induced human skeletal muscle hypertrophy Physiological Genomics. 45: 499-507. PMID 23632419 DOI: 10.1152/Physiolgenomics.00167.2012  0.332
2013 Reynolds RJ, Cui X, Vaughan LK, Redden DT, Causey Z, Perkins E, Shah T, Hughes LB, Damle A, Kern M, Gregersen PK, Johnson MR, Bridges SL. Gene expression patterns in peripheral blood cells associated with radiographic severity in African Americans with early rheumatoid arthritis. Rheumatology International. 33: 129-37. PMID 22238028 DOI: 10.1007/S00296-011-2355-3  0.337
2012 Tan CK, Carey AJ, Cui X, Webb RI, Ipe D, Crowley M, Cripps AW, Benjamin WH, Ulett KB, Schembri MA, Ulett GC. Genome-wide mapping of cystitis due to Streptococcus agalactiae and Escherichia coli in mice identifies a unique bladder transcriptome that signifies pathogen-specific antimicrobial defense against urinary tract infection. Infection and Immunity. 80: 3145-60. PMID 22733575 DOI: 10.1128/Iai.00023-12  0.366
2012 Fang Z, Du R, Cui X. Uniform approximation is more appropriate for Wilcoxon Rank-Sum Test in gene set analysis. Plos One. 7: e31505. PMID 22347488 DOI: 10.1371/Journal.Pone.0031505  0.454
2012 Duarte CW, Willey CD, Zhi D, Cui X, Harris JJ, Vaughan LK, Mehta T, McCubrey RO, Khodarev NN, Weichselbaum RR, Gillespie GY. Expression signature of IFN/STAT1 signaling genes predicts poor survival outcome in glioblastoma multiforme in a subtype-specific manner. Plos One. 7: e29653. PMID 22242177 DOI: 10.1371/Journal.Pone.0029653  0.396
2012 Duell BL, Carey AJ, Tan CK, Cui X, Webb RI, Totsika M, Schembri MA, Derrington P, Irving-Rodgers H, Brooks AJ, Cripps AW, Crowley M, Ulett GC. Innate transcriptional networks activated in bladder in response to uropathogenic Escherichia coli drive diverse biological pathways and rapid synthesis of IL-10 for defense against bacterial urinary tract infection. Journal of Immunology (Baltimore, Md. : 1950). 188: 781-92. PMID 22184725 DOI: 10.4049/Jimmunol.1101231  0.309
2011 Fang Z, Cui X. Design and validation issues in RNA-seq experiments. Briefings in Bioinformatics. 12: 280-7. PMID 21498551 DOI: 10.1093/Bib/Bbr004  0.311
2011 Chen YW, Pat B, Gladden JD, Zheng J, Powell P, Wei CC, Cui X, Husain A, Dell'italia LJ. Dynamic molecular and histopathological changes in the extracellular matrix and inflammation in the transition to heart failure in isolated volume overload. American Journal of Physiology. Heart and Circulatory Physiology. 300: H2251-60. PMID 21421827 DOI: 10.1152/Ajpheart.01104.2010  0.338
2011 Gao L, Fang Z, Zhang K, Zhi D, Cui X. Length bias correction for RNA-seq data in gene set analyses. Bioinformatics (Oxford, England). 27: 662-9. PMID 21252076 DOI: 10.1093/Bioinformatics/Btr005  0.407
2011 Wu X, Patki A, Lara-Castro C, Cui X, Zhang K, Walton RG, Osier MV, Gadbury GL, Allison DB, Martin M, Garvey WT. Genes and biochemical pathways in human skeletal muscle affecting resting energy expenditure and fuel partitioning. Journal of Applied Physiology (Bethesda, Md. : 1985). 110: 746-55. PMID 21109598 DOI: 10.1152/Japplphysiol.00293.2010  0.428
2010 Qiu J, Cui X. Evaluation of a statistical equivalence test applied to microarray data. Journal of Biopharmaceutical Statistics. 20: 240-66. PMID 20309757 DOI: 10.1080/10543400903572738  0.444
2009 Zhu H, Li GJ, Ding L, Cui X, Berg H, Assmann SM, Xia Y. Arabidopsis extra large G-protein 2 (XLG2) interacts with the Gbeta subunit of heterotrimeric G protein and functions in disease resistance. Molecular Plant. 2: 513-25. PMID 19825634 DOI: 10.1093/Mp/Ssp001  0.623
2009 Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, Mangion J, Mehta T, Nitzberg M, Page GP, Petretto E, et al. Repeatability of published microarray gene expression analyses. Nature Genetics. 41: 149-55. PMID 19174838 DOI: 10.1038/Ng.295  0.368
2009 Cui X, Loraine AE. Consistency analysis of redundant probe sets on affymetrix three-prime expression arrays and applications to differential mRNA processing. Plos One. 4: e4229. PMID 19165320 DOI: 10.1371/Journal.Pone.0004229  0.346
2008 Mrug M, Zhou J, Woo Y, Cui X, Szalai AJ, Novak J, Churchill GA, Guay-Woodford LM. Overexpression of innate immune response genes in a model of recessive polycystic kidney disease Kidney International. 73: 63-76. PMID 17960140 DOI: 10.1038/Sj.Ki.5002627  0.328
2008 Mrug M, Zhou J, Woo Y, Cui X, Szalai AJ, Novak J, Churchill GA, Guay-Woodford LM. Response to 'Overexpression of complement-component genes in Han:SPRD rats a model of polycystic kidney disease' Kidney International. 73: 1325. DOI: 10.1038/Ki.2008.52  0.375
2007 Wu X, Wang J, Cui X, Maianu L, Rhees B, Rosinski J, So WV, Willi SM, Osier MV, Hill HS, Page GP, Allison DB, Martin M, Garvey WT. The effect of insulin on expression of genes and biochemical pathways in human skeletal muscle. Endocrine. 31: 5-17. PMID 17709892 DOI: 10.1007/S12020-007-0007-X  0.319
2006 Laudencia-Chingcuanco DL, Stamova BS, Lazo GR, Cui X, Anderson OD. Analysis of the wheat endosperm transcriptome. Journal of Applied Genetics. 47: 287-302. PMID 17132893 DOI: 10.1007/Bf03194638  0.453
2006 Cui X, Affourtit J, Shockley KR, Woo Y, Churchill GA. Inheritance patterns of transcript levels in F1 hybrid mice Genetics. 174: 627-637. PMID 16888332 DOI: 10.1534/Genetics.106.060251  0.349
2006 Allison DB, Cui X, Page GP, Sabripour M. Microarray data analysis: from disarray to consolidation and consensus. Nature Reviews. Genetics. 7: 55-65. PMID 16369572 DOI: 10.1038/Nrg1749  0.326
2005 Yao H, Guo L, Fu Y, Borsuk LA, Wen TJ, Skibbe DS, Cui X, Scheffler BE, Cao J, Emrich SJ, Ashlock DA, Schnable PS. Evaluation of five ab initio gene prediction programs for the discovery of maize genes. Plant Molecular Biology. 57: 445-60. PMID 15830133 DOI: 10.1007/S11103-005-0271-1  0.602
2005 Mrug M, Li R, Cui X, Schoeb TR, Churchill GA, Guay-Woodford LM. Kinesin family member 12 is a candidate polycystic kidney disease modifier in the cpk mouse. Journal of the American Society of Nephrology : Jasn. 16: 905-16. PMID 15728779 DOI: 10.1681/Asn.2004121083  0.349
2005 Cui X, Hwang JT, Qiu J, Blades NJ, Churchill GA. Improved statistical tests for differential gene expression by shrinking variance components estimates. Biostatistics (Oxford, England). 6: 59-75. PMID 15618528 DOI: 10.1093/Biostatistics/Kxh018  0.379
2004 Lobenhofer EK, Cui X, Bennett L, Cable PL, Merrick BA, Churchill GA, Afshari CA. Exploration of low-dose estrogen effects: Identification of No Observed Transcriptional Effect Level (NOTEL) Toxicologic Pathology. 32: 482-492. PMID 15223774 DOI: 10.1080/01926230490483324  0.34
2003 Cui X, Hsia AP, Liu F, Ashlock DA, Wise RP, Schnable PS. Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize. Genetics. 163: 685-98. PMID 12618406  0.704
2002 Skibbe DS, Liu F, Wen TJ, Yandeau MD, Cui X, Cao J, Simmons CR, Schnable PS. Characterization of the aldehyde dehydrogenase gene families of Zea mays and Arabidopsis. Plant Molecular Biology. 48: 751-64. PMID 11999848 DOI: 10.1023/A:1014870429630  0.681
2001 Liu F, Cui X, Horner HT, Weiner H, Schnable PS. Mitochondrial aldehyde dehydrogenase activity is required for male fertility in maize. The Plant Cell. 13: 1063-78. PMID 11340182 DOI: 10.1105/Tpc.13.5.1063  0.635
1996 Cui X, Wise RP, Schnable PS. The rf2 nuclear restorer gene of male-sterile T-cytoplasm maize. Science (New York, N.Y.). 272: 1334-6. PMID 8650543 DOI: 10.1126/Science.272.5266.1334  0.594
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