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Dong-Guk Shin - Publications

Affiliations: 
University of Connecticut, Storrs, CT, United States 
Area:
Bioinformatics Biology, Computer Science
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Joshi P, Basso B, Wang H, Hong SH, Giardina C, Shin DG. rPAC: Route based Pathway Analysis for Cohorts of Gene Expression Data Sets. Methods (San Diego, Calif.). PMID 34628030 DOI: 10.1016/j.ymeth.2021.10.002  0.327
2021 Caba E, Sherman MD, Farizatto KLG, Alcira B, Wang HW, Giardina C, Shin DG, Sandefur CI, Bahr BA. Excitotoxic stimulation activates distinct pathogenic and protective expression signatures in the hippocampus. Journal of Cellular and Molecular Medicine. PMID 34414662 DOI: 10.1111/jcmm.16864  0.314
2020 Zhao Y, Piekos S, Hoang TH, Shin DG. A framework using topological pathways for deeper analysis of transcriptome data. Bmc Genomics. 21: 834. PMID 32138666 DOI: 10.1186/S12864-019-6155-6  0.479
2019 Zhao Y, Shin DG. Deep Pathway Analysis V2.0: A Pathway Analysis Framework Incorporating Multi-dimensional Omics Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31603796 DOI: 10.1109/Tcbb.2019.2945959  0.427
2019 Hoang TH, Zhao Y, Lam Y, Piekos S, Han YC, Reilly C, Joshi P, Hong SH, Sung CO, Giardina C, Shin DG. BioTarget: A Computational Framework Identifying Cancer Type Specific Transcriptional Targets of Immune Response Pathways. Scientific Reports. 9: 9029. PMID 31227749 DOI: 10.1038/S41598-019-45304-X  0.344
2019 Shin DJ, Joshi P, Shin DG, Wang L. Genome-Wide Analysis for Identifying FOXO Protein-Binding Sites. Methods in Molecular Biology (Clifton, N.J.). 1890: 193-203. PMID 30414155 DOI: 10.1007/978-1-4939-8900-3_16  0.359
2018 Thibodeau A, Shin DG. TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators. Bioinformatics (Oxford, England). PMID 30566622 DOI: 10.1093/Bioinformatics/Bty998  0.425
2018 Becker T, Lee WP, Leone J, Zhu Q, Zhang C, Liu S, Sargent J, Shanker K, Mil-Homens A, Cerveira E, Ryan M, Cha J, Navarro FCP, Galeev T, Gerstein M, ... ... Shin DG, et al. FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods. Genome Biology. 19: 38. PMID 29559002 DOI: 10.1186/S13059-018-1404-6  0.338
2017 Thibodeau A, Márquez EJ, Shin DG, Vera-Licona P, Ucar D. Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin. Scientific Reports. 7: 14466. PMID 29089515 DOI: 10.1038/S41598-017-14389-7  0.3
2017 Zhao Y, Hoang TH, Joshi P, Hong SH, Giardina C, Shin DG. A Route-Based Pathway Analysis Framework Integrating Mutation Information and Gene Expression Data. Methods (San Diego, Calif.). PMID 28647608 DOI: 10.1016/J.Ymeth.2017.06.016  0.423
2016 Thibodeau A, Márquez EJ, Luo O, Ruan Y, Menghi F, Shin DG, Stitzel ML, Vera-Licona P, Ucar D. QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. Plos Computational Biology. 12: e1004809. PMID 27336171 DOI: 10.1371/Journal.Pcbi.1004809  0.379
2014 Bayarsaihan D, Shin DG. Epigenetic drug therapy based on bromodomain inhibition. Epigenomics. 6: 473-6. PMID 25431940 DOI: 10.2217/Epi.14.45  0.326
2012 Zhao Y, Chen MH, Pei B, Rowe D, Shin DG, Xie W, Yu F, Kuo L. A Bayesian Approach to Pathway Analysis by Integrating Gene-Gene Functional Directions and Microarray Data. Statistics in Biosciences. 4: 105-131. PMID 23482678 DOI: 10.1007/S12561-011-9046-1  0.64
2012 Pei B, Shin DG. Reconstruction of biological networks by incorporating prior knowledge into Bayesian network models. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 1324-34. PMID 23210479 DOI: 10.1089/Cmb.2011.0194  0.591
2012 Makeyev AV, Enkhmandakh B, Hong SH, Joshi P, Shin DG, Bayarsaihan D. Diversity and complexity in chromatin recognition by TFII-I transcription factors in pluripotent embryonic stem cells and embryonic tissues. Plos One. 7: e44443. PMID 22970219 DOI: 10.1371/Journal.Pone.0044443  0.387
2010 Pei B, Rowe DW, Shin DG. Learning Bayesian networks with integration of indirect prior knowledge. International Journal of Data Mining and Bioinformatics. 4: 505-19. PMID 21133038 DOI: 10.1504/IJDMB.2010.035897  0.56
2010 Kazmi SA, Kim YA, Shin DG. Meta analysis algorithms for microarray gene expression data using gene regulatory networks. International Journal of Data Mining and Bioinformatics. 4: 487-504. PMID 21133037 DOI: 10.1504/IJDMB.2010.035896  0.672
2009 Shin DG, Kazmi SA, Pei B, Kim YA, Maddox J, Nori R, Wong A, Krueger W, Rowe D. Computing consistency between microarray data and known gene regulation relationships. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 13: 1075-82. PMID 19783507 DOI: 10.1109/TITB.2009.2032540  0.698
2009 Paic F, Igwe JC, Nori R, Kronenberg MS, Franceschetti T, Harrington P, Kuo L, Shin DG, Rowe DW, Harris SE, Kalajzic I. Identification of differentially expressed genes between osteoblasts and osteocytes. Bone. 45: 682-92. PMID 19539797 DOI: 10.1016/J.Bone.2009.06.010  0.315
2008 Pei B, Rowe DW, Shin DG. Reverse engineering of gene regulatory network by integration of prior global gene regulatory information Proceedings - Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2008. 129-134. DOI: 10.1109/BIBM.2008.55  0.591
2008 Kazmi SA, Kim YA, Pei B, Ravi N, Rowe DW, Wang HW, Wong A, Shin DG. Meta analysis of microarray data using gene regulation pathways Proceedings - Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2008. 37-42. DOI: 10.1109/BIBM.2008.32  0.678
2006 Kazmi SA, Ghosh S, Shin DG, Hill DW, Grant DF. Alignment of high resolution mass spectra: Development of a heuristic approach for metabolomics Metabolomics. 2: 75-83. DOI: 10.1007/S11306-006-0021-7  0.545
2000 Olendzenski L, Liu L, Zhaxybayeva O, Murphey R, Shin DG, Gogarten JP. Horizontal transfer of archaeal genes into the deinococcaceae: detection by molecular and computer-based approaches. Journal of Molecular Evolution. 51: 587-99. PMID 11116332 DOI: 10.1007/s002390010122  0.304
1998 Lim J, Shin D. A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogeneous Database Environment Journal of Database Management. 9: 4-11. DOI: 10.4018/Jdm.1998100101  0.343
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