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Matthew L. Scotch, Ph.D. - Publications

Affiliations: 
2006 University of Pittsburgh, Pittsburgh, PA, United States 
Area:
Computer Science, Public Health
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Vaiente MA, Scotch M. Going back to the roots: Evaluating Bayesian phylogeographic models with discrete trait uncertainty. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 85: 104501. PMID 32798768 DOI: 10.1016/J.Meegid.2020.104501  0.366
2020 Magge A, Weissenbacher D, O’Connor K, Tahsin T, Gonzalez-Hernandez G, Scotch M. GeoBoost2: A Natural Language Processing Pipeline for GenBank Metadata Enrichment for Virus Phylogeography. Bioinformatics. 36: 5120-5121. PMID 32683454 DOI: 10.1093/Bioinformatics/Btaa647  0.335
2020 Ngonghala CN, Iboi E, Eikenberry S, Scotch M, MacIntyre CR, Bonds MH, Gumel AB. Mathematical assessment of the impact of non-pharmaceutical interventions on curtailing the 2019 novel Coronavirus. Mathematical Biosciences. 325: 108364. PMID 32360770 DOI: 10.1016/J.Mbs.2020.108364  0.305
2019 Beard R, Scotch M. Identifying current and emerging resources and tools utilized for detection, prediction, and visualization of viral zoonotic disease clusters: a Delphi study. Jamia Open. 2: 306-311. PMID 31709389 DOI: 10.1093/jamiaopen/ooz015  0.302
2019 Adam DC, Scotch M, MacIntyre CR. Phylodynamics of Influenza A/H1N1pdm09 in India Reveals Circulation Patterns and Increased Selection for Clade 6b Residues and Other High Mortality Mutants. Viruses. 11. PMID 31462006 DOI: 10.3390/V11090791  0.339
2019 Scotch M, Tahsin T, Weissenbacher D, O'Connor K, Magge A, Vaiente M, Suchard MA, Gonzalez-Hernandez G. Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography. Virus Evolution. 5: vey043. PMID 30838129 DOI: 10.1093/Ve/Vey043  0.322
2019 Halden R, Terlinden E, Kraberger S, Scotch M, Steele J, Varsani A. Tracking harmful chemicals and pathogens using the Human Health Observatory at ASU Online Journal of Public Health Informatics. 11. DOI: 10.5210/Ojphi.V11I1.9843  0.382
2019 Scotch M, Magge A, Valente M. ZooPhy: A bioinformatics pipeline for virus phylogeography and surveillance Online Journal of Public Health Informatics. 11. DOI: 10.5210/Ojphi.V11I1.9729  0.394
2018 Raina MacIntyre C, Engells TE, Scotch M, Heslop DJ, Gumel AB, Poste G, Chen X, Herche W, Steinhöfel K, Lim S, Broom A. Converging and emerging threats to health security. Environment Systems & Decisions. 38: 198-207. PMID 32288980 DOI: 10.1007/S10669-017-9667-0  0.37
2018 Bui CM, Adam DC, Njoto E, Scotch M, MacIntyre CR. Characterising routes of H5N1 and H7N9 spread in China using Bayesian phylogeographical analysis. Emerging Microbes & Infections. 7: 184. PMID 30459301 DOI: 10.1038/S41426-018-0185-Z  0.331
2018 Beard R, Wentz E, Scotch M. A systematic review of spatial decision support systems in public health informatics supporting the identification of high risk areas for zoonotic disease outbreaks. International Journal of Health Geographics. 17: 38. PMID 30376842 DOI: 10.1186/S12942-018-0157-5  0.408
2018 Adam DC, Scotch M, MacIntyre CR. Bayesian Phylogeography and Pathogenic Characterization of Smallpox Based on HA, ATI, and CrmB Genes. Molecular Biology and Evolution. 35: 2607-2617. PMID 30099520 DOI: 10.1093/Molbev/Msy153  0.336
2018 Magee D, Scotch M. The effects of random taxa sampling schemes in Bayesian virus phylogeography. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 64: 225-230. PMID 29991455 DOI: 10.1016/J.Meegid.2018.07.003  0.329
2018 Morin CW, Stoner-Duncan B, Winker K, Scotch M, Hess JJ, Meschke JS, Ebi KL, Rabinowitz PM. Avian influenza virus ecology and evolution through a climatic lens. Environment International. 119: 241-249. PMID 29980049 DOI: 10.1016/J.Envint.2018.06.018  0.344
2018 Njoto EN, Scotch M, Bui CM, Adam DC, Chughtai AA, MacIntyre CR. Phylogeography of H5N1 avian influenza virus in Indonesia. Transboundary and Emerging Diseases. PMID 29691995 DOI: 10.1111/Tbed.12883  0.355
2018 Magee D, Taylor JE, Scotch M. The Effects of Sampling Location and Predictor Point Estimate Certainty on Posterior Support in Bayesian Phylogeographic Generalized Linear Models. Scientific Reports. 8: 5905. PMID 29651124 DOI: 10.1038/S41598-018-24264-8  0.32
2018 Tahsin T, Weissenbacher D, O'Connor K, Magge A, Scotch M, Gonzalez-Hernandez G. GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records Bioinformatics. 34: 1606-1608. PMID 29240889 DOI: 10.1093/Bioinformatics/Btx799  0.369
2016 Tahsin T, Weissenbacher D, Rivera R, Beard R, Firago M, Wallstrom G, Scotch M, Gonzalez G. A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. Journal of the American Medical Informatics Association : Jamia. PMID 26911818 DOI: 10.1093/Jamia/Ocv172  0.328
2015 Weissenbacher D, Tahsin T, Beard R, Figaro M, Rivera R, Scotch M, Gonzalez G. Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinformatics (Oxford, England). 31: i348-56. PMID 26072502 DOI: 10.1093/Bioinformatics/Btv259  0.42
2015 Veljkovic V, Glisic S, Muller CP, Scotch M, Branch DR, Perovic VR, Sencanski M, Veljkovic N, Colombatti A. In silico analysis suggests interaction between Ebola virus and the extracellular matrix. Frontiers in Microbiology. 6: 135. PMID 25745423 DOI: 10.3389/Fmicb.2015.00135  0.315
2015 Magee D, Beard R, Suchard MA, Lemey P, Scotch M. Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion. Archives of Virology. 160: 215-24. PMID 25355432 DOI: 10.1007/S00705-014-2262-5  0.384
2014 Kane MJ, Price N, Scotch M, Rabinowitz P. Comparison of ARIMA and Random Forest time series models for prediction of avian influenza H5N1 outbreaks. Bmc Bioinformatics. 15: 276. PMID 25123979 DOI: 10.1186/1471-2105-15-276  0.304
2013 Scotch M, Mei C, Makonnen YJ, Pinto J, Ali A, Vegso S, Kane M, Sarkar IN, Rabinowitz P. Phylogeography of influenza A H5N1 clade 2.2.1.1 in Egypt. Bmc Genomics. 14: 871. PMID 24325606 DOI: 10.1186/1471-2164-14-871  0.364
2013 Scotch M, Baarson B, Beard R, Lauder R, Varman A, Halden RU. Examining the differences in format and characteristics of zoonotic virus surveillance data on state agency websites. Journal of Medical Internet Research. 15: e90. PMID 23628771 DOI: 10.2196/Jmir.2487  0.455
2013 Scotch M, Mei C. Phylogeography of swine influenza H3N2 in the United States: Translational public health for zoonotic disease surveillance Infection, Genetics and Evolution. 13: 224-229. PMID 23137647 DOI: 10.1016/J.Meegid.2012.09.015  0.443
2012 Rabinowitz PM, Galusha D, Vegso S, Michalove J, Rinne S, Scotch M, Kane M. Comparison of human and animal surveillance data for H5N1 influenza A in Egypt 2006-2011. Plos One. 7: e43851. PMID 23028474 DOI: 10.1371/Journal.Pone.0043851  0.349
2011 Scotch M, Brownstein JS, Vegso S, Galusha D, Rabinowitz P. Human vs. animal outbreaks of the 2009 swine-origin H1N1 influenza A epidemic. Ecohealth. 8: 376-80. PMID 21912985 DOI: 10.1007/S10393-011-0706-X  0.345
2011 Scotch M, Rabinowitz P, Brandt C. State-level zoonotic disease surveillance in the United States. Zoonoses and Public Health. 58: 523-8. PMID 21824354 DOI: 10.1111/J.1863-2378.2011.01401.X  0.308
2011 Scotch M, Sarkar IN, Mei C, Leaman R, Cheung KH, Ortiz P, Singraur A, Gonzalez G. Enhancing phylogeography by improving geographical information from GenBank. Journal of Biomedical Informatics. 44: S44-7. PMID 21723960 DOI: 10.1016/J.Jbi.2011.06.005  0.34
2011 Scotch M, Mattocks K, Rabinowitz P, Brandt C. A qualitative study of state-level zoonotic disease surveillance in new England. Zoonoses and Public Health. 58: 131-9. PMID 20163575 DOI: 10.1111/J.1863-2378.2009.01319.X  0.389
2011 Scotch M, Mei C, Brandt C, Sarkar IN, Cheung K. Erratum: At the intersection of public-health informatics and bioinformatics: Using advanced web technologies for phylogeography (Epidemiology (2010) 21 (764-768)) Epidemiology. 22. DOI: 10.1097/Ede.0B013E31821Eccd9  0.361
2010 Rabinowitz PM, Scotch ML, Conti LA. Animals as sentinels: using comparative medicine to move beyond the laboratory. Ilar Journal / National Research Council, Institute of Laboratory Animal Resources. 51: 262-7. PMID 21131727 DOI: 10.1093/Ilar.51.3.262  0.376
2010 Scotch M, Mei C, Brandt C, Sarkar IN, Cheung K. At the intersection of public-health informatics and bioinformatics: using advanced Web technologies for phylogeography. Epidemiology (Cambridge, Mass.). 21: 764-8. PMID 20924230 DOI: 10.1097/Ede.0B013E3181F534Dd  0.315
2010 Konovalov S, Scotch M, Post L, Brandt C. Biomedical informatics techniques for processing and analyzing web blogs of military service members. Journal of Medical Internet Research. 12: e45. PMID 20923755 DOI: 10.2196/Jmir.1538  0.315
2009 Scotch M, Odofin L, Rabinowitz P. Linkages between animal and human health sentinel data. Bmc Veterinary Research. 5: 15. PMID 19389228 DOI: 10.1186/1746-6148-5-15  0.382
2008 Scotch M, Yip KY, Cheung KH. Development of grid-like applications for public health using Web 2.0 mashup techniques. Journal of the American Medical Informatics Association : Jamia. 15: 783-6. PMID 18755998 DOI: 10.1197/Jamia.M2731  0.407
2008 Boulos MNK, Scotch M, Cheung KH, Burden D. Web GIS in practice VI: A demo playlist of geo-mashups for public health neogeographers International Journal of Health Geographics. 7. PMID 18638385 DOI: 10.1186/1476-072X-7-38  0.318
2008 Parmanto B, Paramita MV, Sugiantara W, Pramana G, Scotch M, Burke DS. Spatial and multidimensional visualization of Indonesia's village health statistics. International Journal of Health Geographics. 7: 30. PMID 18544174 DOI: 10.1186/1476-072X-7-30  0.653
2008 Scotch M, Parmanto B, Monaco V. Evaluation of SOVAT: an OLAP-GIS decision support system for community health assessment data analysis. Bmc Medical Informatics and Decision Making. 8: 22. PMID 18541037 DOI: 10.1186/1472-6947-8-22  0.655
2008 Cheung KH, Yip KY, Townsend JP, Scotch M. HCLS 2.0/3.0: health care and life sciences data mashup using Web 2.0/3.0. Journal of Biomedical Informatics. 41: 694-705. PMID 18487092 DOI: 10.1016/J.Jbi.2008.04.001  0.378
2007 Scotch M, Parmanto B, Monaco V. Usability Evaluation of the Spatial OLAP Visualization and Analysis Tool (SOVAT). Journal of Usability Studies. 2: 76-95. PMID 26613012  0.533
2006 Scotch M, Parmanto B, Gadd CS, Sharma RK. Exploring the role of GIS during community health assessment problem solving: experiences of public health professionals. International Journal of Health Geographics. 5: 39. PMID 16981996 DOI: 10.1186/1476-072X-5-39  0.629
2006 Scotch M, Parmanto B. Development of SOVAT: a numerical-spatial decision support system for community health assessment research. International Journal of Medical Informatics. 75: 771-84. PMID 16359916 DOI: 10.1016/J.Ijmedinf.2005.10.008  0.628
2005 Parmanto B, Scotch M, Ahmad S. A framework for designing a healthcare outcome data warehouse. Perspectives in Health Information Management / Ahima, American Health Information Management Association. 2: 3. PMID 18066371  0.511
2005 Scotch M, Parmanto B. SOVAT: Spatial OLAP visualization and analysis tool Proceedings of the Annual Hawaii International Conference On System Sciences. 142.  0.632
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