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Ozlem Uzuner - Publications

Affiliations: 
Informatics-Information Science State University of New York, Albany, Albany, NY, United States 
Area:
Information Science, Computer Science, Bioinformatics Biology
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57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Dobbins NJ, Han B, Zhou W, Lan KF, Kim HN, Harrington R, Uzuner Ö, Yetisgen M. LeafAI: query generator for clinical cohort discovery rivaling a human programmer. Journal of the American Medical Informatics Association : Jamia. PMID 37550244 DOI: 10.1093/jamia/ocad149  0.308
2023 Lybarger K, Yetisgen M, Uzuner Ö. The 2022 n2c2/UW shared task on extracting social determinants of health. Journal of the American Medical Informatics Association : Jamia. PMID 36795066 DOI: 10.1093/jamia/ocad012  0.314
2022 Dobbins NJ, Mullen T, Uzuner Ö, Yetisgen M. The Leaf Clinical Trials Corpus: a new resource for query generation from clinical trial eligibility criteria. Scientific Data. 9: 490. PMID 35953524 DOI: 10.1038/s41597-022-01521-0  0.355
2022 Gao Y, Dligach D, Christensen L, Tesch S, Laffin R, Xu D, Miller T, Uzuner O, Churpek MM, Afshar M. A scoping review of publicly available language tasks in clinical natural language processing. Journal of the American Medical Informatics Association : Jamia. PMID 35923088 DOI: 10.1093/jamia/ocac127  0.345
2021 Henry S, Wang Y, Shen F, Uzuner O. Corrigendum to: The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. Journal of the American Medical Informatics Association : Jamia. PMID 34401908 DOI: 10.1093/jamia/ocab153  0.359
2021 Mulyar A, Uzuner O, McInnes B. MT-clinical BERT: scaling clinical information extraction with multitask learning. Journal of the American Medical Informatics Association : Jamia. PMID 34333635 DOI: 10.1093/jamia/ocab126  0.313
2020 Wang Y, Fu S, Shen F, Henry S, Uzuner O, Liu H. The 2019 n2c2/OHNLP Track on Clinical Semantic Textual Similarity: Overview. Jmir Medical Informatics. 8: e23375. PMID 33245291 DOI: 10.2196/23375  0.377
2020 Henry S, Wang Y, Shen F, Uzuner O. The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. Journal of the American Medical Informatics Association : Jamia. PMID 32968800 DOI: 10.1093/jamia/ocaa106  0.415
2020 Sutphin C, Lee K, Yepes AJ, Uzuner Ö, McInnes BT. Adverse drug event detection using reason assignments in FDA drug labels. Journal of Biomedical Informatics. 103552. PMID 32890727 DOI: 10.1016/J.Jbi.2020.103552  0.32
2019 Wang Y, Xu H, Uzuner O. Editorial: The second international workshop on health natural language processing (HealthNLP 2019). Bmc Medical Informatics and Decision Making. 19: 233. PMID 31801516 DOI: 10.1186/S12911-019-0930-9  0.333
2019 Spasić I, Uzuner Ö, Zhou L. Emerging clinical applications of text analytics. International Journal of Medical Informatics. 103974. PMID 31630961 DOI: 10.1016/J.Ijmedinf.2019.103974  0.462
2019 Henry S, Buchan K, Filannino M, Stubbs A, Uzuner O. 2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records. Journal of the American Medical Informatics Association : Jamia. PMID 31584655 DOI: 10.1093/Jamia/Ocz166  0.418
2019 Stubbs A, Filannino M, Soysal E, Henry S, Uzuner Ö. Cohort selection for clinical trials: n2c2 2018 shared task track 1. Journal of the American Medical Informatics Association : Jamia. PMID 31562516 DOI: 10.1093/Jamia/Ocz163  0.412
2019 Tao C, Lee K, Filannino M, Uzuner Ö. An Exploratory Study on Pseudo-Data Generation in Prescription and Adverse Drug Reaction Extraction. Studies in Health Technology and Informatics. 264: 388-392. PMID 31437951 DOI: 10.3233/Shti190249  0.385
2019 Lee K, Filannino M, Uzuner Ö. An Empirical Test of GRUs and Deep Contextualized Word Representations on De-Identification. Studies in Health Technology and Informatics. 264: 218-222. PMID 31437917 DOI: 10.3233/Shti190215  0.366
2018 Tao C, Filannino M, Uzuner Ö. FABLE: A Semi-Supervised Prescription Information Extraction System. Amia ... Annual Symposium Proceedings. Amia Symposium. 2018: 1534-1543. PMID 30815199  0.316
2018 Filannino M, Stubbs A, Uzuner Ö. Corrigendum to "Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2" [J Biomed Inform. 2017 Nov;75S:S62-S70]. Journal of Biomedical Informatics. 85: 204. PMID 30213376 DOI: 10.1016/J.Jbi.2018.08.015  0.344
2018 Filannino M, Uzuner Ö. Advancing the State of the Art in Clinical Natural Language Processing through Shared Tasks. Yearbook of Medical Informatics. 27: 184-192. PMID 30157522 DOI: 10.1055/S-0038-1667079  0.457
2017 Uzuner O, Stubbs A, Filannino M. A Natural Language Processing Challenge for Clinical Records: Research Domains Criteria (RDoC) for Psychiatry. Journal of Biomedical Informatics. PMID 29042245 DOI: 10.1016/J.Jbi.2017.10.005  0.417
2017 Luo Y, Cheng Y, Uzuner Ö, Szolovits P, Starren J. Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes. Journal of the American Medical Informatics Association : Jamia. PMID 29025149 DOI: 10.1093/Jamia/Ocx090  0.405
2017 Tao C, Filannino M, Uzuner Ö. Prescription Extraction Using CRFs and Word Embeddings. Journal of Biomedical Informatics. PMID 28684255 DOI: 10.1016/j.jbi.2017.07.002  0.321
2017 Stubbs A, Filannino M, Uzuner Ö. De-identification of psychiatric intake records: Overview of 2016 CEGS N-GRID Shared Tasks Track 1. Journal of Biomedical Informatics. PMID 28614702 DOI: 10.1016/J.Jbi.2017.06.011  0.382
2017 Filannino M, Stubbs A, Uzuner Ö. Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID Shared Tasks Track 2. Journal of Biomedical Informatics. PMID 28455151 DOI: 10.1016/J.Jbi.2017.04.017  0.422
2016 Dernoncourt F, Lee JY, Uzuner O, Szolovits P. De-identification of patient notes with recurrent neural networks. Journal of the American Medical Informatics Association : Jamia. PMID 28040687 DOI: 10.1093/Jamia/Ocw156  0.326
2016 Luo Y, Uzuner Ö, Szolovits P. Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations. Briefings in Bioinformatics. PMID 26851224 DOI: 10.1093/Bib/Bbw001  0.45
2016 Hagen L, Harrison TM, Uzuner Ö, May W, Fake T, Katragadda S. E-petition popularity: Do linguistic and semantic factors matter? Government Information Quarterly. 33: 783-795. DOI: 10.1016/J.Giq.2016.07.006  0.366
2016 Goel S, Uzuner O. Do Sentiments Matter in Fraud Detection? Estimating Semantic Orientation of Annual Reports Intelligent Systems in Accounting, Finance and Management. DOI: 10.1002/Isaf.1392  0.315
2015 Uzuner Ö, Stubbs A. Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks. Journal of Biomedical Informatics. 58: S1-5. PMID 26515500 DOI: 10.1016/J.Jbi.2015.10.007  0.427
2015 Kumar V, Stubbs A, Shaw S, Uzuner O. Creation of a new longitudinal corpus of clinical narratives. Journal of Biomedical Informatics. PMID 26433122 DOI: 10.1016/J.Jbi.2015.09.018  0.383
2015 Stubbs A, Uzuner Ö. Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus. Journal of Biomedical Informatics. 58: S20-9. PMID 26319540 DOI: 10.1016/J.Jbi.2015.07.020  0.446
2015 Kotfila C, Uzuner Ö. A systematic comparison of feature space effects on disease classifier performance for phenotype identification of five diseases. Journal of Biomedical Informatics. 58: S92-S102. PMID 26241355 DOI: 10.1016/J.Jbi.2015.07.016  0.343
2015 Stubbs A, Kotfila C, Uzuner Ö. Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1. Journal of Biomedical Informatics. 58: S11-9. PMID 26225918 DOI: 10.1016/J.Jbi.2015.06.007  0.468
2015 Stubbs A, Kotfila C, Xu H, Uzuner Ö. Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2. Journal of Biomedical Informatics. 58: S67-77. PMID 26210362 DOI: 10.1016/J.Jbi.2015.07.001  0.352
2015 Zheng K, Vydiswaran VG, Liu Y, Wang Y, Stubbs A, Uzuner O, Gururaj AE, Bayer S, Aberdeen J, Rumshisky A, Pakhomov S, Liu H, Xu H. Ease of adoption of clinical natural language processing software: An evaluation of five systems. Journal of Biomedical Informatics. PMID 26210361 DOI: 10.1016/J.Jbi.2015.07.008  0.421
2015 Stubbs A, Uzuner Ö. Annotating risk factors for heart disease in clinical narratives for diabetic patients. Journal of Biomedical Informatics. 58: S78-91. PMID 26004790 DOI: 10.1016/J.Jbi.2015.05.009  0.398
2015 Sun W, Rumshisky A, Uzuner O. Normalization of relative and incomplete temporal expressions in clinical narratives. Journal of the American Medical Informatics Association : Jamia. PMID 25868462 DOI: 10.1093/Jamia/Ocu004  0.648
2015 Luo Y, Xin Y, Hochberg E, Joshi R, Uzuner O, Szolovits P. Subgraph Augmented Non-Negative Tensor Factorization (SANTF) for Modeling Clinical Narrative Text. Journal of the American Medical Informatics Association : Jamia. PMID 25862765 DOI: 10.1093/Jamia/Ocv016  0.391
2015 Stubbs A, Uzuner O, Kotfila C, Goldstein I, Szolovits P. Challenges in synthesizing surrogate PHI in narrative EMRs Medical Data Privacy Handbook. 717-735. DOI: 10.1007/978-3-319-23633-9_27  0.668
2014 Chasin R, Rumshisky A, Uzuner O, Szolovits P. Word sense disambiguation in the clinical domain: A comparison of knowledge-rich and knowledgepoor unsupervised methods Journal of the American Medical Informatics Association. 21: 842-849. PMID 24441986 DOI: 10.1136/Amiajnl-2013-002133  0.423
2013 Uzuner Ö, Stubbs A, Sun W. Chronology of your health events: approaches to extracting temporal relations from medical narratives. Journal of Biomedical Informatics. 46: S1-4. PMID 24286753 DOI: 10.1016/J.Jbi.2013.11.005  0.716
2013 Sun W, Rumshisky A, Uzuner O. Annotating temporal information in clinical narratives Journal of Biomedical Informatics. 46: S5-S12. PMID 23872518 DOI: 10.1016/J.Jbi.2013.07.004  0.706
2013 Sun W, Rumshisky A, Uzuner O. Temporal reasoning over clinical text: The state of the art Journal of the American Medical Informatics Association. 20: 814-819. PMID 23676245 DOI: 10.1136/Amiajnl-2013-001760  0.709
2013 Sun W, Rumshisky A, Uzuner O. Evaluating temporal relations in clinical text: 2012 i2b2 Challenge Journal of the American Medical Informatics Association. 20: 806-813. PMID 23564629 DOI: 10.1136/Amiajnl-2013-001628  0.712
2012 Bodnari A, Szolovits P, Uzuner Ö. MCORES: a system for noun phrase coreference resolution for clinical records. Journal of the American Medical Informatics Association : Jamia. 19: 906-12. PMID 22419739 DOI: 10.1136/Amiajnl-2011-000591  0.412
2012 Uzuner O, Bodnari A, Shen S, Forbush T, Pestian J, South BR. Evaluating the state of the art in coreference resolution for electronic medical records. Journal of the American Medical Informatics Association : Jamia. 19: 786-91. PMID 22366294 DOI: 10.1136/Amiajnl-2011-000784  0.432
2011 Halgrim SR, Xia F, Solti I, Cadag E, Uzuner O. A cascade of classifiers for extracting medication information from discharge summaries. Journal of Biomedical Semantics. 2: S2. PMID 21992591 DOI: 10.1186/2041-1480-2-S3-S2  0.425
2011 Chapman WW, Nadkarni PM, Hirschman L, D'Avolio LW, Savova GK, Uzuner O. Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. Journal of the American Medical Informatics Association : Jamia. 18: 540-3. PMID 21846785 DOI: 10.1136/Amiajnl-2011-000465  0.468
2011 Uzuner Ö, South BR, Shen S, DuVall SL. 2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. Journal of the American Medical Informatics Association : Jamia. 18: 552-6. PMID 21685143 DOI: 10.1136/Amiajnl-2011-000203  0.456
2010 Uzuner O, Solti I, Xia F, Cadag E. Community annotation experiment for ground truth generation for the i2b2 medication challenge. Journal of the American Medical Informatics Association : Jamia. 17: 519-23. PMID 20819855 DOI: 10.1136/Jamia.2010.004200  0.345
2010 Uzuner O, Solti I, Cadag E. Extracting medication information from clinical text. Journal of the American Medical Informatics Association : Jamia. 17: 514-8. PMID 20819854 DOI: 10.1136/Jamia.2010.003947  0.451
2010 Uzuner O, Mailoa J, Ryan R, Sibanda T. Semantic relations for problem-oriented medical records. Artificial Intelligence in Medicine. 50: 63-73. PMID 20646918 DOI: 10.1016/J.Artmed.2010.05.006  0.341
2010 Goel S, Gangolly J, Faerman SR, Uzuner O. Can linguistic predictors detect fraudulent financial filings? Journal of Emerging Technologies in Accounting. 7: 25-46. DOI: 10.2308/Jeta.2010.7.1.25  0.357
2009 Goldstein I, Uzuner O. Specializing for predicting obesity and its co-morbidities. Journal of Biomedical Informatics. 42: 873-86. PMID 19041423 DOI: 10.1016/J.Jbi.2008.11.001  0.612
2008 Uzuner O, Sibanda TC, Luo Y, Szolovits P. A de-identifier for medical discharge summaries. Artificial Intelligence in Medicine. 42: 13-35. PMID 18053696 DOI: 10.1016/J.Artmed.2007.10.001  0.47
2008 Uzuner O, Goldstein I, Luo Y, Kohane I. Identifying patient smoking status from medical discharge records. Journal of the American Medical Informatics Association : Jamia. 15: 14-24. PMID 17947624 DOI: 10.1197/Jamia.M2408  0.652
2007 Goldstein I, Arzrumtsyan A, Uzuner O. Three approaches to automatic assignment of ICD-9-CM codes to radiology reports. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 279-83. PMID 18693842  0.631
2007 Uzuner O, Luo Y, Szolovits P. Evaluating the state-of-the-art in automatic de-identification. Journal of the American Medical Informatics Association : Jamia. 14: 550-63. PMID 17600094 DOI: 10.1197/Jamia.M2444  0.431
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