Stephen J. O'Brien - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 

364 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yu H, Xing YT, Meng H, He B, Li WJ, Qi XZ, Zhao JY, Zhuang Y, Xu X, Yamaguchi N, Driscoll CA, O'Brien SJ, Luo SJ. Genomic evidence for the Chinese mountain cat as a wildcat conspecific () and its introgression to domestic cats. Science Advances. 7. PMID 34162544 DOI: 10.1126/sciadv.abg0221  0.736
2020 Balmer L, O'Leary CA, Menotti-Raymond M, David V, O'Brien S, Penglis B, Hendrickson S, Reeves-Johnson M, Gottlieb S, Fleeman L, Vankan D, Rand J, Morahan G. Mapping of Diabetes Susceptibility Loci in a Domestic Cat Breed with an Unusually High Incidence of Diabetes Mellitus. Genes. 11. PMID 33228033 DOI: 10.3390/genes11111369  0.73
2020 Rayko M, Komissarov A, Kwan JC, Lim-Fong G, Rhodes AC, Kliver S, Kuchur P, O'Brien SJ, Lopez JV. Draft genome of Bugula neritina, a colonial animal packing powerful symbionts and potential medicines. Scientific Data. 7: 356. PMID 33082320 DOI: 10.1038/s41597-020-00684-y  0.711
2019 O'Brien SJ. A Beautiful Life: High Risk-High Payoff in Genetic Science. Annual Review of Animal Biosciences. PMID 31743063 DOI: 10.1146/Annurev-Animal-021419-083944  0.4
2019 Lewin HA, Graves JAM, Ryder OA, Graphodatsky AS, O'Brien SJ. Precision nomenclature for the new genomics. Gigascience. 8. PMID 31437278 DOI: 10.1093/Gigascience/Giz086  0.345
2019 Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Vaz Pinto P, et al. Whole Genome Sequencing and Re-sequencing of the Sable Antelope (): A Resource for Monitoring Diversity in and Populations. G3 (Bethesda, Md.). PMID 31000506 DOI: 10.1534/G3.119.400084  0.411
2019 Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, et al. Genome-wide sequence analyses of ethnic populations across Russia. Genomics. PMID 30902755 DOI: 10.1016/J.Ygeno.2019.03.007  0.39
2019 Marra NJ, Stanhope MJ, Jue NK, Wang M, Sun Q, Pavinski Bitar P, Richards VP, Komissarov A, Rayko M, Kliver S, Stanhope BJ, Winkler C, O'Brien SJ, Antunes A, Jorgensen S, et al. White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability. Proceedings of the National Academy of Sciences of the United States of America. PMID 30782839 DOI: 10.1073/Pnas.1819778116  0.626
2019 Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman P, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, et al. Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. Genome Research. PMID 30760546 DOI: 10.1101/Gr.239863.118  0.347
2018 Liu YC, Sun X, Driscoll C, Miquelle DG, Xu X, Martelli P, Uphyrkina O, Smith JLD, O'Brien SJ, Luo SJ. Genome-Wide Evolutionary Analysis of Natural History and Adaptation in the World's Tigers. Current Biology : Cb. PMID 30482605 DOI: 10.1016/J.Cub.2018.09.019  0.733
2018 Zhernakova DV, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Dobrynin P, Yurchenko AA, Shimansky V, Shcherbakova IV, Glotov AS, Valle DL, Tang M, et al. Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis. Plos One. 13: e0200423. PMID 29995946 DOI: 10.1371/Journal.Pone.0200423  0.381
2018 Grigorev K, Kliver S, Dobrynin P, Komissarov A, Wolfsberger W, Krasheninnikova K, Afanador-Herna Ndez YM, Brandt AL, Paulino LA, Carreras R, Rodríguez LE, Nu N Ez A, Brandt JR, Silva F, Herna Ndez-Martich JD, et al. Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola. Gigascience. PMID 29718205 DOI: 10.1093/Gigascience/Giy025  0.404
2018 Wang S, Wang J, Fan M, Li T, Pan H, Wang X, Liu H, Lin Q, Zhang J, Guan L, Zhernakova DV, O'Brien SJ, Feng Z, Chang L, Dai E, et al. Identified OAS3 gene variants associated with coexistence of HBsAg and anti-HBs in chronic HBV infection. Journal of Viral Hepatitis. PMID 29582521 DOI: 10.1111/Jvh.12899  0.323
2017 O'Brien SJ, Johnson WE, Driscoll CA, Dobrynin P, Marker L. Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities. The Journal of Heredity. 108: 671-677. PMID 28821181 DOI: 10.1093/Jhered/Esx047  0.722
2017 Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, et al. Genome-wide signatures of complex introgression and adaptive evolution in the big cats. Science Advances. 3: e1700299. PMID 28776029 DOI: 10.1126/Sciadv.1700299  0.401
2016 Mohamed Yusoff A, Tan TK, Hari R, Koepfli KP, Wee WY, Antunes A, Sitam FT, Rovie-Ryan JJ, Karuppannan KV, Wong GJ, Lipovich L, Warren WC, O'Brien SJ, Choo SW. De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin. Scientific Reports. 6: 28199. PMID 27618997 DOI: 10.1038/Srep28199  0.315
2016 Tan TK, Tan KY, Hari R, Mohamed Yusoff A, Wong GJ, Siow CC, Mutha NV, Rayko M, Komissarov A, Dobrynin P, Krasheninnikova K, Tamazian G, Paterson IC, Warren WC, Johnson WE, et al. PGD: a pangolin genome hub for the research community. Database : the Journal of Biological Databases and Curation. 2016. PMID 27616775 DOI: 10.1093/Database/Baw063  0.333
2016 Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko A, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, et al. Pangolin genomes and the evolution of mammalian scales and immunity. Genome Research. PMID 27510566 DOI: 10.1101/Gr.203521.115  0.317
2016 Li G, Hillier LW, Grahn R, Zimin AV, David VA, Menotti-Raymond M, Middleton R, Hannah S, Hendrickson S, Makunin A, O'Brien SJ, Minx P, Wilson RK, Lyons LA, Warren WC, et al. A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination. G3 (Bethesda, Md.). PMID 27172201 DOI: 10.1534/G3.116.028746  0.748
2016 O'Brien SJ, Koepfli KP, Eizirik E, Johnson W, Driscoll C, Antunes A, Schmidt-Kuntzel A, Marker L, Dobrynin P. Response to Comment by Faurby, Werdelin and Svenning. Genome Biology. 17: 90. PMID 27150130 DOI: 10.1186/S13059-016-0942-Z  0.715
2016 Kuehn MH, Lipsett KA, Menotti-Raymond M, Whitmore SS, Scheetz TE, David VA, O'Brien SJ, Zhao Z, Jens JK, Snella EM, Ellinwood NM, McLellan GJ. A Mutation in LTBP2 Causes Congenital Glaucoma in Domestic Cats (Felis catus). Plos One. 11: e0154412. PMID 27149523 DOI: 10.1371/Journal.Pone.0154412  0.317
2016 Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, et al. Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. Plos Genetics. 12: e1005954. PMID 27082250 DOI: 10.1371/Journal.Pgen.1005954  0.398
2016 Terrell KA, Crosier AE, Wildt DE, O'Brien SJ, Anthony NM, Marker L, Johnson WE. Continued decline in genetic diversity among wild cheetahs (Acinonyx jubatus) without further loss of semen quality Biological Conservation. 200: 192-199. DOI: 10.1016/J.Biocon.2016.05.034  0.333
2015 Moore AE, Cotterill FP, Winterbach CW, Winterbach HE, Antunes A, O'Brien SJ. Genetic Evidence for Contrasting Wetland and Savannah Habitat Specializations in Different Populations of Lions (Panthera leo). The Journal of Heredity. PMID 26695079 DOI: 10.1093/Jhered/Esv097  0.343
2015 Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel M, Godinez R, Komissarov A, et al. Genomic legacy of the African cheetah, Acinonyx jubatus. Genome Biology. 16: 277. PMID 26653294 DOI: 10.1186/S13059-015-0837-4  0.758
2015 Spencer PB, Yurchenko AA, David VA, Scott R, Koepfli KP, Driscoll C, O'Brien SJ, Menotti-Raymond M. The Population Origins and Expansion of Feral Cats in Australia. The Journal of Heredity. PMID 26647063 DOI: 10.1093/Jhered/Esv095  0.72
2015 Oleksyk TK, Brukhin V, O'Brien SJ. Putting Russia on the genome map. Science (New York, N.Y.). 350: 747. PMID 26564837 DOI: 10.1126/Science.350.6262.747-A  0.365
2015 Chung O, Jin S, Cho YS, Lim J, Kim H, Jho S, Kim HM, Jun J, Lee H, Chon A, Ko J, Edwards J, Weber JA, Han K, O'Brien SJ, et al. The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures. Genome Biology. 16: 215. PMID 26486310 DOI: 10.1186/S13059-015-0780-4  0.399
2015 Xue HR, Yamaguchi N, Driscoll CA, Han Y, Bar-Gal GK, Zhuang Y, Mazak JH, Macdonald DW, O'Brien SJ, Luo SJ. Genetic ancestry of the extinct javan and bali tigers. The Journal of Heredity. 106: 247-57. PMID 25754539 DOI: 10.1093/Jhered/Esv002  0.733
2014 Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.). 346: 1311-20. PMID 25504712 DOI: 10.1126/Science.1251385  0.389
2014 Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, et al. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proceedings of the National Academy of Sciences of the United States of America. 111: 17230-5. PMID 25385592 DOI: 10.1073/Pnas.1410083111  0.751
2014 Svitin A, Malov S, Cherkasov N, Geerts P, Rotkevich M, Dobrynin P, Shevchenko A, Guan L, Troyer J, Hendrickson S, Dilks HH, Oleksyk TK, Donfield S, Gomperts E, Jabs DA, et al. GWATCH: a web platform for automated gene association discovery analysis. Gigascience. 3: 18. PMID 25374661 DOI: 10.1186/2047-217X-3-18  0.731
2014 Tamazian G, Simonov S, Dobrynin P, Makunin A, Logachev A, Komissarov A, Shevchenko A, Brukhin V, Cherkasov N, Svitin A, Koepfli KP, Pontius J, Driscoll CA, Blackistone K, Barr C, et al. Annotated features of domestic cat - Felis catus genome. Gigascience. 3: 13. PMID 25143822 DOI: 10.1186/2047-217X-3-13  0.72
2014 David VA, Menotti-Raymond M, Wallace AC, Roelke M, Kehler J, Leighty R, Eizirik E, Hannah SS, Nelson G, Schäffer AA, Connelly CJ, O'Brien SJ, Ryugo DK. Endogenous retrovirus insertion in the KIT oncogene determines white and white spotting in domestic cats. G3 (Bethesda, Md.). 4: 1881-91. PMID 25085922 DOI: 10.1534/G3.114.013425  0.349
2014 Walters-Conte KB, Johnson DL, Johnson WE, O'Brien SJ, Pecon-Slattery J. The dynamic proliferation of CanSINEs mirrors the complex evolution of Feliforms. Bmc Evolutionary Biology. 14: 137. PMID 24947429 DOI: 10.1186/1471-2148-14-137  0.357
2014 Luo SJ, Zhang Y, Johnson WE, Miao L, Martelli P, Antunes A, Smith JL, O'Brien SJ. Sympatric Asian felid phylogeography reveals a major Indochinese-Sundaic divergence. Molecular Ecology. 23: 2072-92. PMID 24629132 DOI: 10.1111/Mec.12716  0.35
2014 Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, et al. The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes. The Journal of Heredity. 105: 1-18. PMID 24336862 DOI: 10.1093/jhered/est084  0.704
2014 Yim HS, Cho YS, Guang X, Kang SG, Jeong JY, Cha SS, Oh HM, Lee JH, Yang EC, Kwon KK, Kim YJ, Kim TW, Kim W, Jeon JH, Kim SJ, et al. Minke whale genome and aquatic adaptation in cetaceans. Nature Genetics. 46: 88-92. PMID 24270359 DOI: 10.1038/Ng.2835  0.356
2014 OʼBrien SJ, Svitin A, Malov S, Cherkazov N, Dobrynin P, Geerts P, Troyer J, Hendrickson-Lambert S, Sezgin E, Hutcheson H. 141 Gene Discovery and Data Sharing in Genome Wide Association Analyses Jaids Journal of Acquired Immune Deficiency Syndromes. 65: 59. DOI: 10.1097/01.Qai.0000446723.52450.65  0.369
2013 Matte EM, Castilho CS, Miotto RA, Sana DA, Johnson WE, O'Brien SJ, de Freitas TR, Eizirik E. Molecular evidence for a recent demographic expansion in the puma (Puma concolor) (Mammalia, Felidae). Genetics and Molecular Biology. 36: 586-97. PMID 24385863 DOI: 10.1590/S1415-47572013000400018  0.34
2013 McLaren PJ, Coulonges C, Ripke S, van den Berg L, Buchbinder S, Carrington M, Cossarizza A, Dalmau J, Deeks SG, Delaneau O, De Luca A, Goedert JJ, Haas D, Herbeck JT, Kathiresan S, et al. Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls. Plos Pathogens. 9: e1003515. PMID 23935489 DOI: 10.1371/Journal.Ppat.1003515  0.383
2013 O'Brien SJ, Hendrickson SL. Host genomic influences on HIV/AIDS. Genome Biology. 14: 201. PMID 23369251 DOI: 10.1186/Gb-2013-14-1-201  0.745
2012 Schneider A, David VA, Johnson WE, O'Brien SJ, Barsh GS, Menotti-Raymond M, Eizirik E. How the leopard hides its spots: ASIP mutations and melanism in wild cats. Plos One. 7: e50386. PMID 23251368 DOI: 10.1371/Journal.Pone.0050386  0.314
2012 Tang M, Lautenberger JA, Gao X, Sezgin E, Hendrickson SL, Troyer JL, David VA, Guan L, McIntosh CE, Guo X, Zheng Y, Liao J, Deng H, Malasky M, Kessing B, et al. The principal genetic determinants for nasopharyngeal carcinoma in China involve the HLA class I antigen recognition groove. Plos Genetics. 8: e1003103. PMID 23209447 DOI: 10.1371/Journal.Pgen.1003103  0.732
2012 Bernardi G, Wiley EO, Mansour H, Miller MR, Orti G, Haussler D, O'Brien SJ, Ryder OA, Venkatesh B. The fishes of Genome 10K. Marine Genomics. 7: 3-6. PMID 22897955 DOI: 10.1016/J.Margen.2012.02.002  0.315
2012 Philip S, Machado JP, Maldonado E, Vasconcelos V, O'Brien SJ, Johnson WE, Antunes A. Fish lateral line innovation: insights into the evolutionary genomic dynamics of a unique mechanosensory organ. Molecular Biology and Evolution. 29: 3887-98. PMID 22844072 DOI: 10.1093/Molbev/Mss194  0.348
2012 Wester CW, Eden SK, Shepherd BE, Bussmann H, Novitsky V, Samuels DC, Hendrickson SL, Winkler CA, O'Brien SJ, Essex M, D'Aquila RT, DeGruttola V, Marlink RG. Risk factors for symptomatic hyperlactatemia and lactic acidosis among combination antiretroviral therapy-treated adults in Botswana: results from a clinical trial. Aids Research and Human Retroviruses. 28: 759-65. PMID 22540188 DOI: 10.1089/Aid.2011.0303  0.709
2012 Lee M, Hyun J, Lee S, An J, Lee E, Min M, Kimura J, Kawada S, Kurihara N, Luo S, O'Brien SJ, Johnson WE, Lee H. Subspecific Status of the Korean Tiger Inferred by Ancient DNA Analysis Animal Systematics, Evolution and Diversity. 28: 48-53. DOI: 10.5635/Ased.2012.28.1.048  0.335
2012 Grinfeld J, Alonso-Dominguez JM, Alikian M, Valgañón M, Nteliopoulos G, White DL, Marin D, Hedgley C, O'Brien S, Clark RE, Szydlo RM, Apperley J, Goldman JM, Foroni L, Gerrard G. A Novel Splice Site Variant of hOCT-1 and Response to Imatinib. Blood. 120: 2555-2555. DOI: 10.1182/Blood.V120.21.2555.2555  0.319
2011 An P, Li R, Wang JM, Yoshimura T, Takahashi M, Samudralal R, O'Brien SJ, Phair J, Goedert JJ, Kirk GD, Troyer JL, Sezgin E, Buchbinder SP, Donfield S, Nelson GW, et al. Role of exonic variation in chemokine receptor genes on AIDS: CCRL2 F167Y association with pneumocystis pneumonia. Plos Genetics. 7: e1002328. PMID 22046140 DOI: 10.1371/Journal.Pgen.1002328  0.336
2011 Driscoll C, Yamaguchi N, O'Brien SJ, Macdonald DW. A suite of genetic markers useful in assessing wildcat (Felis silvestris ssp.)-domestic cat (Felis silvestris catus) admixture. The Journal of Heredity. 102: S87-90. PMID 21846752 DOI: 10.1093/Jhered/Esr047  0.745
2011 Driscoll CA, Luo S, MacDonald D, Dinerstein E, Chestin I, Pereladova O, O'Brien SJ. Restoring tigers to the Caspian region. Science (New York, N.Y.). 333: 822-3. PMID 21835996 DOI: 10.1126/Science.333.6044.822-B  0.682
2011 Troyer JL, Roelke ME, Jespersen JM, Baggett N, Buckley-Beason V, MacNulty D, Craft M, Packer C, Pecon-Slattery J, O'Brien SJ. FIV diversity: FIV Ple subtype composition may influence disease outcome in African lions. Veterinary Immunology and Immunopathology. 143: 338-46. PMID 21723622 DOI: 10.1016/J.Vetimm.2011.06.013  0.325
2011 Troyer JL, Nelson GW, Lautenberger JA, Chinn L, McIntosh C, Johnson RC, Sezgin E, Kessing B, Malasky M, Hendrickson SL, Li G, Pontius J, Tang M, An P, Winkler CA, et al. Genome-wide association study implicates PARD3B-based AIDS restriction. The Journal of Infectious Diseases. 203: 1491-502. PMID 21502085 DOI: 10.1093/Infdis/Jir046  0.756
2011 Guo X, Zhang Y, Li J, Ma J, Wei Z, Tan W, O'Brien SJ. Strong influence of human leukocyte antigen (HLA)-DP gene variants on development of persistent chronic hepatitis B virus carriers in the Han Chinese population. Hepatology (Baltimore, Md.). 53: 422-8. PMID 21274863 DOI: 10.1002/Hep.24048  0.312
2011 Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M. Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Research. 21: 137-45. PMID 21081712 DOI: 10.1101/Gr.111278.110  0.36
2010 Luo SJ, Johnson WE, O'Brien SJ. Applying molecular genetic tools to tiger conservation. Integrative Zoology. 5: 351-62. PMID 21392353 DOI: 10.1111/J.1749-4877.2010.00222.X  0.367
2010 Johnson RC, Nelson GW, Troyer JL, Lautenberger JA, Kessing BD, Winkler CA, O'Brien SJ. Accounting for multiple comparisons in a genome-wide association study (GWAS). Bmc Genomics. 11: 724. PMID 21176216 DOI: 10.1186/1471-2164-11-724  0.362
2010 Chinn LW, Tang M, Kessing BD, Lautenberger JA, Troyer JL, Malasky MJ, McIntosh C, Kirk GD, Wolinsky SM, Buchbinder SP, Gomperts ED, Goedert JJ, O'Brien SJ. Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. The Journal of Infectious Diseases. 202: 1836-45. PMID 21083371 DOI: 10.1086/657322  0.336
2010 Johnson WE, Onorato DP, Roelke ME, Land ED, Cunningham M, Belden RC, McBride R, Jansen D, Lotz M, Shindle D, Howard J, Wildt DE, Penfold LM, Hostetler JA, Oli MK, et al. Genetic restoration of the Florida panther. Science (New York, N.Y.). 329: 1641-5. PMID 20929847 DOI: 10.1126/Science.1192891  0.321
2010 Hendrickson SL, Lautenberger JA, Chinn LW, Malasky M, Sezgin E, Kingsley LA, Goedert JJ, Kirk GD, Gomperts ED, Buchbinder SP, Troyer JL, O'Brien SJ. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. Plos One. 5: e12862. PMID 20877624 DOI: 10.1371/Journal.Pone.0012862  0.748
2010 Guo X, Zeng Y, Deng H, Liao J, Zheng Y, Li J, Kessing B, O'Brien SJ. Genetic Polymorphisms of CYP2E1, GSTP1, NQO1 and MPO and the Risk of Nasopharyngeal Carcinoma in a Han Chinese Population of Southern China Bmc Research Notes. 3: 212-212. PMID 20663217 DOI: 10.1186/1756-0500-3-212  0.315
2010 Sezgin E, Jabs DA, Hendrickson SL, Van Natta M, Zdanov A, Lewis RA, Smith MW, Troyer JL, O'Brien SJ. Effect of host genetics on the development of cytomegalovirus retinitis in patients with AIDS. The Journal of Infectious Diseases. 202: 606-13. PMID 20617924 DOI: 10.1086/654814  0.724
2010 Mullikin JC, Hansen NF, Shen L, Ebling H, Donahue WF, Tao W, Saranga DJ, Brand A, Rubenfield MJ, Young AC, Cruz P, Driscoll C, David V, Al-Murrani SW, et al. Light whole genome sequence for SNP discovery across domestic cat breeds. Bmc Genomics. 11: 406. PMID 20576142 DOI: 10.1186/1471-2164-11-406  0.709
2010 Sezgin E, Drosdak A, McIntosh C, Kessing B, Lautenberger JA, Goedert JJ, Phair JP, Troyer JL, Smith MW, O'Brien SJ. Examination of disease-based selection, demographic history and population structure in European Y-chromosome haplogroup I. Journal of Human Genetics. 55: 613-20. PMID 20574427 DOI: 10.1038/Jhg.2010.77  0.398
2010 Sezgin E, Hendrickson SL, Jabs DA, Van Natta ML, Lewis RA, Troyer JL, O'Brien SJ. Effect of host genetics on incidence of HIV neuroretinal disorder in patients with AIDS. Journal of Acquired Immune Deficiency Syndromes (1999). 54: 343-51. PMID 20531015 DOI: 10.1097/Qai.0B013E3181Deaf4D  0.719
2010 Hendrickson SL, Jabs DA, Van Natta M, Lewis RA, Wallace DC, O'Brien SJ. Mitochondrial haplogroups are associated with risk of neuroretinal disorder in HIV-positive patients. Journal of Acquired Immune Deficiency Syndromes (1999). 53: 451-5. PMID 20098332 DOI: 10.1097/Qai.0B013E3181Cb8319  0.732
2010 Herbeck JT, Gottlieb GS, Winkler CA, Nelson GW, An P, Maust BS, Wong KG, Troyer JL, Goedert JJ, Kessing BD, Detels R, Wolinsky SM, Martinson J, Buchbinder S, Kirk GD, et al. Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS. The Journal of Infectious Diseases. 201: 618-26. PMID 20064070 DOI: 10.1086/649842  0.336
2010 Menotti-Raymond M, Deckman KH, David V, Myrkalo J, O'Brien SJ, Narfström K. Mutation discovered in a feline model of human congenital retinal blinding disease. Investigative Ophthalmology & Visual Science. 51: 2852-9. PMID 20053974 DOI: 10.1167/Iovs.09-4261  0.301
2010 Oleksyk TK, Smith MW, O'Brien SJ. Genome-wide scans for footprints of natural selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 185-205. PMID 20008396 DOI: 10.1098/Rstb.2009.0219  0.401
2010 Eizirik E, David VA, Buckley-Beason V, Roelke ME, Schäffer AA, Hannah SS, Narfström K, O'Brien SJ, Menotti-Raymond M. Defining and mapping mammalian coat pattern genes: multiple genomic regions implicated in domestic cat stripes and spots. Genetics. 184: 267-75. PMID 19858284 DOI: 10.1534/Genetics.109.109629  0.316
2010 Johnson WE, Onorato DP, Roelke ME, Land ED, O'Brien SJ. Genetic Future for Florida Panthers—Response Science. 330: 1744-1744. DOI: 10.1126/Science.330.6012.1744-B  0.317
2009 O'Brien SJ. Comparative genomics in vertebrates: A role for the platypus Reproduction, Fertility and Development. 21. PMID 20092045 DOI: 10.1071/Rdv21N8_In  0.313
2009 Fellay J, Ge D, Shianna KV, Colombo S, Ledergerber B, Cirulli ET, Urban TJ, Zhang K, Gumbs CE, Smith JP, Castagna A, Cozzi-Lepri A, De Luca A, Easterbrook P, Günthard HF, et al. Common genetic variation and the control of HIV-1 in humans. Plos Genetics. 5: e1000791. PMID 20041166 DOI: 10.1371/Journal.Pgen.1000791  0.397
2009 Narfström K, David V, Jarret O, Beatty J, Barrs V, Wilkie D, O'Brien S, Menotti-Raymond M. Retinal degeneration in the Abyssinian and Somali cat (rdAc): correlation between genotype and phenotype and rdAc allele frequency in two continents. Veterinary Ophthalmology. 12: 285-91. PMID 19751487 DOI: 10.1111/J.1463-5224.2009.00710.X  0.317
2009 O'Brien SJ. Stewardship of human biospecimens, DNA, genotype, and clinical data in the GWAS era Annual Review of Genomics and Human Genetics. 10: 193-209. PMID 19630558 DOI: 10.1146/Annurev-Genom-082908-150133  0.323
2009 Lewin HA, Larkin DM, Pontius J, O'Brien SJ. Every genome sequence needs a good map. Genome Research. 19: 1925-8. PMID 19596977 DOI: 10.1101/Gr.094557.109  0.373
2009 Pontius JU, O'Brien SJ. Artifacts of the 1.93 feline genome assembly derived from the feline- specific satellite sequence Journal of Heredity. 100: S14-S18. PMID 19531733 DOI: 10.1093/Jhered/Esp035  0.354
2009 Driscoll CA, Macdonald DW, O'Brien SJ. From wild animals to domestic pets, an evolutionary view of domestication. Proceedings of the National Academy of Sciences of the United States of America. 9971-8. PMID 19528637 DOI: 10.1073/Pnas.0901586106  0.704
2009 Driscoll CA, Clutton-Brock J, Kitchener AC, O'Brien SJ. The Taming of the cat. Genetic and archaeological findings hint that wildcats became housecats earlier--and in a different place--than previously thought. Scientific American. 300: 68-75. PMID 19485091  0.704
2009 Menotti-Raymond M, David VA, Eizirik E, Roelke ME, Ghaffari H, O'Brien SJ. Mapping of the domestic cat "SILVER" coat color locus identifies a unique genomic location for silver in mammals. The Journal of Heredity. 100: S8-13. PMID 19398491 DOI: 10.1093/Jhered/Esp018  0.365
2009 Li X, Glaser D, Li W, Johnson WE, O'Brien SJ, Beauchamp GK, Brand JG. Analyses of sweet receptor gene (Tas1r2) and preference for sweet stimuli in species of Carnivora. The Journal of Heredity. 100: S90-100. PMID 19366814 DOI: 10.1093/Jhered/Esp015  0.301
2009 Hendrickson SL, Kingsley LA, Ruiz-Pesini E, Poole JC, Jacobson LP, Palella FJ, Bream JH, Wallace DC, O'Brien SJ. Mitochondrial DNA haplogroups influence lipoatrophy after highly active antiretroviral therapy. Journal of Acquired Immune Deficiency Syndromes (1999). 51: 111-6. PMID 19339895 DOI: 10.1097/Qai.0B013E3181A324D6  0.731
2009 Oleksyk TK, Shrestha S, Truelove AL, Goedert JJ, Donfield S, Phair J, Mehta S, O'Brien SJ, Smith MW. Extended IL10 haplotypes and their association with HIV progression to AIDS. Genes and Immunity. 10: 309-322. PMID 19295541 DOI: 10.1038/Gene.2009.9  0.354
2009 Schmidt-Küntzel A, Nelson G, David VA, Schäffer AA, Eizirik E, Roelke ME, Kehler JS, Hannah SS, O'Brien SJ, Menotti-Raymond M. A domestic cat X chromosome linkage map and the sex-linked orange locus: mapping of orange, multiple origins and epistasis over nonagouti. Genetics. 181: 1415-25. PMID 19189955 DOI: 10.1534/Genetics.108.095240  0.346
2009 Sezgin E, Lind JM, Shrestha S, Hendrickson S, Goedert JJ, Donfield S, Kirk GD, Phair JP, Troyer JL, O'Brien SJ, Smith MW. Association of Y chromosome haplogroup I with HIV progression, and HAART outcome. Human Genetics. 125: 281-94. PMID 19169712 DOI: 10.1007/S00439-008-0620-7  0.727
2009 Driscoll CA, Yamaguchi N, Bar-Gal GK, Roca AL, Luo S, Macdonald DW, O'Brien SJ. Mitochondrial phylogeography illuminates the origin of the extinct caspian tiger and its relationship to the amur tiger. Plos One. 4: e4125. PMID 19142238 DOI: 10.1371/Journal.Pone.0004125  0.742
2009 Haussler D, O'Brien SJ, Ryder OA, Keith Barker F, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA, Miller W, Murphy RW, Murphy WJ, Sheldon FH, Sinervo B, et al. Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species Journal of Heredity. 100: 659-674. DOI: 10.1093/Jhered/Esp086  0.333
2009 O'Brien SJ. Introduction: Comparative genomics in vertebrates: A role for the platypus Australian Journal of Zoology. 57. DOI: 10.1071/Zov57N4_In  0.317
2008 Roelke ME, Johnson WE, Millán J, Palomares F, Revilla E, Rodríguez A, Calzada J, Ferreras P, León-Vizcaíno L, Delibes M, O'Brien SJ. Exposure to disease agents in the endangered Iberian lynx (). European Journal of Wildlife Research. 54: 171-178. PMID 32214935 DOI: 10.1007/S10344-007-0122-2  0.312
2008 Hendrickson SL, Hutcheson HB, Ruiz-Pesini E, Poole JC, Lautenberger J, Sezgin E, Kingsley L, Goedert JJ, Vlahov D, Donfield S, Wallace DC, O'Brien SJ. Mitochondrial DNA haplogroups influence AIDS progression. Aids (London, England). 22: 2429-39. PMID 19005266 DOI: 10.1097/Qad.0B013E32831940Bb  0.713
2008 Antunes A, Troyer JL, Roelke ME, Pecon-Slattery J, Packer C, Winterbach C, Winterbach H, Hemson G, Frank L, Stander P, Siefert L, Driciru M, Funston PJ, Alexander KA, Prager KC, et al. The evolutionary dynamics of the lion Panthera leo revealed by host and viral population genomics. Plos Genetics. 4: e1000251. PMID 18989457 DOI: 10.1371/Journal.Pgen.1000251  0.395
2008 Krause J, Unger T, Noçon A, Malaspinas AS, Kolokotronis SO, Stiller M, Soibelzon L, Spriggs H, Dear PH, Briggs AW, Bray SC, O'Brien SJ, Rabeder G, Matheus P, Cooper A, et al. Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. Bmc Evolutionary Biology. 8: 220. PMID 18662376 DOI: 10.1186/1471-2148-8-220  0.358
2008 Yuhki N, Mullikin JC, Beck T, Stephens R, O'Brien SJ. Sequences, annotation and single nucleotide polymorphism of the major histocompatibility complex in the domestic cat. Plos One. 3: e2674. PMID 18629345 DOI: 10.1371/Journal.Pone.0002674  0.345
2008 O'Brien SJ. The Platypus Genome Unraveled Cell. 133: 953-955. PMID 18555772 DOI: 10.1016/J.Cell.2008.05.038  0.32
2008 O'Brien SJ, Johnson W, Driscoll C, Pontius J, Pecon-Slattery J, Menotti-Raymond M. State of cat genomics. Trends in Genetics : Tig. 24: 268-79. PMID 18471926 DOI: 10.1016/J.Tig.2008.03.004  0.747
2008 Luo SJ, Johnson WE, Martenson J, Antunes A, Martelli P, Uphyrkina O, Traylor-Holzer K, Smith JL, O'Brien SJ. Subspecies genetic assignments of worldwide captive tigers increase conservation value of captive populations. Current Biology : Cb. 18: 592-6. PMID 18424146 DOI: 10.1016/J.Cub.2008.03.053  0.302
2008 Hendrickson SL, Jacobson LP, Nelson GW, Phair JP, Lautenberger J, Johnson RC, Kingsley L, Margolick JB, Detels R, Goedert JJ, O'Brien SJ. Host genetic influences on highly active antiretroviral therapy efficacy and AIDS-free survival. Journal of Acquired Immune Deficiency Syndromes (1999). 48: 263-71. PMID 18391751 DOI: 10.1097/Qai.0B013E31816Fdc5F  0.733
2008 Hutcheson HB, Lautenberger JA, Nelson GW, Pontius JU, Kessing BD, Winkler CA, Smith MW, Johnson R, Stephens R, Phair J, Goedert JJ, Donfield S, O'Brien SJ. Detecting AIDS restriction genes: from candidate genes to genome-wide association discovery. Vaccine. 26: 2951-65. PMID 18325640 DOI: 10.1016/J.Vaccine.2007.12.054  0.401
2008 Oleksyk TK, Zhao K, De La Vega FM, Gilbert DA, O'Brien SJ, Smith MW. Identifying selected regions from heterozygosity and divergence using a light-coverage genomic dataset from two human populations Plos One. 3. PMID 18320033 DOI: 10.1371/Journal.Pone.0001712  0.381
2008 da Fonseca RR, Johnson WE, O'Brien SJ, Ramos MJ, Antunes A. The adaptive evolution of the mammalian mitochondrial genome. Bmc Genomics. 9: 119. PMID 18318906 DOI: 10.1186/1471-2164-9-119  0.318
2008 Troyer JL, Vandewoude S, Pecon-Slattery J, McIntosh C, Franklin S, Antunes A, Johnson W, O'Brien SJ. FIV cross-species transmission: an evolutionary prospective. Veterinary Immunology and Immunopathology. 123: 159-66. PMID 18299153 DOI: 10.1016/J.Vetimm.2008.01.023  0.333
2008 Pecon-Slattery J, McCracken CL, Troyer JL, VandeWoude S, Roelke M, Sondgeroth K, Winterbach C, Winterbach H, O'Brien SJ. Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild. Bmc Genomics. 9: 66. PMID 18251995 DOI: 10.1186/1471-2164-9-66  0.327
2008 Marker LL, Pearks Wilkerson AJ, Sarno RJ, Martenson J, Breitenmoser-Würsten C, O'Brien SJ, Johnson WE. Molecular genetic insights on cheetah (Acinonyx jubatus) ecology and conservation in Namibia. The Journal of Heredity. 99: 2-13. PMID 17982159 DOI: 10.1093/Jhered/Esm081  0.345
2008 O'Brien SJ. Comparative Genomics of Primates Annual Review of Genetics. 42: 81013034826018. DOI: 10.1146/Annurev.Genet.42.110807.091445  0.316
2008 Culver M, Hedrick PW, Murphy K, O'Brien S, Hornocker MG. Estimation of the bottleneck size in Florida panthers Animal Conservation. 11: 104-110. DOI: 10.1111/J.1469-1795.2007.00154.X  0.645
2007 Murphy WJ, O'Brien SJ. Designing and optimizing comparative anchor primers for comparative gene mapping and phylogenetic inference Nature Protocols. 2: 3022-3030. PMID 18007639 DOI: 10.1038/Nprot.2007.429  0.339
2007 Kehler JS, David VA, Schäffer AA, Bajema K, Eizirik E, Ryugo DK, Hannah SS, O'Brien SJ, Menotti-Raymond M. Four independent mutations in the feline fibroblast growth factor 5 gene determine the long-haired phenotype in domestic cats. The Journal of Heredity. 98: 555-66. PMID 17767004 DOI: 10.1093/Jhered/Esm072  0.35
2007 Martin MP, Pascal V, Yeager M, Phair J, Kirk GD, Hoots K, O'Brien SJ, Anderson SK, Carrington M. A mutation in KIR3DS1 that results in truncation and lack of cell surface expression. Immunogenetics. 59: 823-9. PMID 17687550 DOI: 10.1007/S00251-007-0240-8  0.32
2007 Yuhki N, Beck T, Stephens R, Neelam B, O'Brien SJ. Comparative genomic structure of human, dog, and cat MHC: HLA, DLA, and FLA. The Journal of Heredity. 98: 390-9. PMID 17675392 DOI: 10.1093/Jhered/Esm056  0.339
2007 Antunes A, Pontius J, Ramos MJ, O'Brien SJ, Johnson WE. Mitochondrial introgressions into the nuclear genome of the domestic cat. The Journal of Heredity. 98: 414-20. PMID 17660503 DOI: 10.1093/Jhered/Esm062  0.394
2007 Pontius JU, O'Brien SJ. Genome Annotation Resource Fields - GARFIELD: A genome browser for Felis catus Journal of Heredity. 98: 386-389. PMID 17646276 DOI: 10.1093/Jhered/Esm055  0.342
2007 Luo SJ, Johnson WE, David VA, Menotti-Raymond M, Stanyon R, Cai QX, Beck T, Yuhki N, Pecon-Slattery J, Smith JL, O'Brien SJ. Development of Y chromosome intraspecific polymorphic markers in the Felidae. The Journal of Heredity. 98: 400-13. PMID 17646273 DOI: 10.1093/Jhered/Esm063  0.379
2007 Baena A, Mootnick AR, Falvo JV, Tsytskova AV, Ligeiro F, Diop OM, Brieva C, Gagneux P, O'Brien SJ, Ryder OA, Goldfeld AE. Primate TNF promoters reveal markers of phylogeny and evolution of innate immunity. Plos One. 2: e621. PMID 17637837 DOI: 10.1371/Journal.Pone.0000621  0.312
2007 Driscoll CA, Menotti-Raymond M, Roca AL, Hupe K, Johnson WE, Geffen E, Harley EH, Delibes M, Pontier D, Kitchener AC, Yamaguchi N, O'brien SJ, Macdonald DW. The Near Eastern origin of cat domestication. Science (New York, N.Y.). 317: 519-23. PMID 17600185 DOI: 10.1126/Science.1139518  0.713
2007 An P, Wang LH, Hutcheson-Dilks H, Nelson G, Donfield S, Goedert JJ, Rinaldo CR, Buchbinder S, Kirk GD, O'Brien SJ, Winkler CA. Regulatory polymorphisms in the cyclophilin A gene, PPIA, accelerate progression to AIDS. Plos Pathogens. 3: e88. PMID 17590083 DOI: 10.1371/Journal.Ppat.0030088  0.32
2007 Vàzquez-Salat N, Yuhki N, Beck T, O'Brien SJ, Murphy WJ. Gene conversion between mammalian CCR2 and CCR5 chemokine receptor genes: a potential mechanism for receptor dimerization. Genomics. 90: 213-24. PMID 17544254 DOI: 10.1016/J.Ygeno.2007.04.009  0.314
2007 Menotti-Raymond M, David VA, Schäffer AA, Stephens R, Wells D, Kumar-Singh R, O'Brien SJ, Narfström K. Mutation in CEP290 discovered for cat model of human retinal degeneration. The Journal of Heredity. 98: 211-20. PMID 17507457 DOI: 10.1093/Jhered/Esm019  0.323
2007 Martin MP, Qi Y, Gao X, Yamada E, Martin JN, Pereyra F, Colombo S, Brown EE, Shupert WL, Phair J, Goedert JJ, Buchbinder S, Kirk GD, Telenti A, Connors M, et al. Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1. Nature Genetics. 39: 733-40. PMID 17496894 DOI: 10.1038/Ng2035  0.317
2007 O'Brien SJ. Q&A: Stephen J. O'Brien Current Biology : Cb. 17. PMID 17387781 DOI: 10.1016/J.Cub.2006.12.006  0.327
2007 King V, Goodfellow PN, Pearks Wilkerson AJ, Johnson WE, O'Brien SJ, Pecon-Slattery J. Evolution of the male-determining gene SRY within the cat family Felidae. Genetics. 175: 1855-67. PMID 17277366 DOI: 10.1534/Genetics.106.066779  0.372
2007 An P, Duggal P, Wang LH, O'Brien SJ, Donfield S, Goedert JJ, Phair J, Buchbinder S, Kirk GD, Winkler CA. Polymorphisms of CUL5 are associated with CD4+ T cell loss in HIV-1 infected individuals. Plos Genetics. 3: e19. PMID 17257057 DOI: 10.1371/Journal.Pgen.0030019  0.316
2007 Murphy WJ, Davis B, David VA, Agarwala R, Schäffer AA, Pearks Wilkerson AJ, Neelam B, O'Brien SJ, Menotti-Raymond M. A 1.5-Mb-resolution radiation hybrid map of the cat genome and comparative analysis with the canine and human genomes. Genomics. 89: 189-96. PMID 16997530 DOI: 10.1016/J.Ygeno.2006.08.007  0.349
2006 O'Brien SJ, Troyer JL, Roelke M, Marker L, Pecon-Slattery J. Plagues and adaptation: Lessons from the Felidae models for SARS and AIDS. Biological Conservation. 131: 255-267. PMID 32226081 DOI: 10.1016/J.Biocon.2006.05.001  0.377
2006 Buckley-Beason VA, Johnson WE, Nash WG, Stanyon R, Menninger JC, Driscoll CA, Howard J, Bush M, Page JE, Roelke ME, Stone G, Martelli PP, Wen C, Ling L, Duraisingam RK, et al. Molecular evidence for species-level distinctions in clouded leopards. Current Biology : Cb. 16: 2371-6. PMID 17141620 DOI: 10.1016/J.Cub.2006.08.066  0.713
2006 Fyfe JC, Menotti-Raymond M, David VA, Brichta L, Schäffer AA, Agarwala R, Murphy WJ, Wedemeyer WJ, Gregory BL, Buzzell BG, Drummond MC, Wirth B, O'Brien SJ. An approximately 140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival. Genome Research. 16: 1084-90. PMID 16899656 DOI: 10.1101/Gr.5268806  0.327
2006 Javanbakht H, An P, Gold B, Petersen DC, O'Huigin C, Nelson GW, O'Brien SJ, Kirk GD, Detels R, Buchbinder S, Donfield S, Shulenin S, Song B, Perron MJ, Stremlau M, et al. Effects of human TRIM5alpha polymorphisms on antiretroviral function and susceptibility to human immunodeficiency virus infection. Virology. 354: 15-27. PMID 16887163 DOI: 10.1016/J.Virol.2006.06.031  0.324
2006 Guo XC, Scott K, Liu Y, Dean M, David V, Nelson GW, Johnson RC, Dilks HH, Lautenberger J, Kessing B, Martenson J, Guan L, Sun S, Deng H, Zheng Y, et al. Genetic factors leading to chronic Epstein-Barr virus infection and nasopharyngeal carcinoma in South East China: study design, methods and feasibility. Human Genomics. 2: 365-75. PMID 16848974 DOI: 10.1186/1479-7364-2-6-365  0.354
2006 Bashirova AA, Bleiber G, Qi Y, Hutcheson H, Yamashita T, Johnson RC, Cheng J, Alter G, Goedert JJ, Buchbinder S, Hoots K, Vlahov D, May M, Maldarelli F, Jacobson L, et al. Consistent effects of TSG101 genetic variability on multiple outcomes of exposure to human immunodeficiency virus type 1 Journal of Virology. 80: 6757-6763. PMID 16809281 DOI: 10.1128/Jvi.00094-06  0.34
2006 Baker CS, Vant MD, Dalebout ML, Lento GM, O'Brien SJ, Yuhki N. Diversity and duplication of DQB and DRB-like genes of the MHC in baleen whales (suborder: Mysticeti). Immunogenetics. 58: 283-96. PMID 16568262 DOI: 10.1007/S00251-006-0080-Y  0.495
2006 Johnson WE, Eizirik E, Pecon-Slattery J, Murphy WJ, Antunes A, Teeling E, O'Brien SJ. The late Miocene radiation of modern Felidae: a genetic assessment. Science (New York, N.Y.). 311: 73-7. PMID 16400146 DOI: 10.1126/Science.1122277  0.367
2006 Kim JH, Antunes A, Luo SJ, Menninger J, Nash WG, O'Brien SJ, Johnson WE. Evolutionary analysis of a large mtDNA translocation (numt) into the nuclear genome of the Panthera genus species. Gene. 366: 292-302. PMID 16380222 DOI: 10.1016/J.Gene.2005.08.023  0.385
2006 Shrestha S, Strathdee SA, Galai N, Oleksyk T, Fallin MD, Mehta S, Schaid D, Vlahov D, O'Brien SJ, Smith MW. Behavioral risk exposure and host genetics of susceptibility to HIV-1 infection. The Journal of Infectious Diseases. 193: 16-26. PMID 16323127 DOI: 10.1086/498532  0.307
2005 Sabeti PC, Walsh E, Schaffner SF, Varilly P, Fry B, Hutcheson HB, Cullen M, Mikkelsen TS, Roy J, Patterson N, Cooper R, Reich D, Altshuler D, O'Brien S, Lander ES. The case for selection at CCR5-Delta32. Plos Biology. 3: e378. PMID 16248677 DOI: 10.1371/Journal.Pbio.0030378  0.374
2005 O'Brien SJ, Fraser CM. Genomes and evolution: the power of comparative genomics. Current Opinion in Genetics & Development. 15: 569-71. PMID 16246544 DOI: 10.1016/J.Gde.2005.10.001  0.301
2005 Modi WS, Scott K, Goedert JJ, Vlahov D, Buchbinder S, Detels R, Donfield S, O'Brien SJ, Winkler C. Haplotype analysis of the SDF-1 (CXCL12) gene in a longitudinal HIV-1/AIDS cohort study Genes and Immunity. 6: 691-698. PMID 16177829 DOI: 10.1038/Sj.Gene.6364258  0.311
2005 O'Brien SJ, Johnson WE. Big cat genomics. Annual Review of Genomics and Human Genetics. 6: 407-29. PMID 16124868 DOI: 10.1146/Annurev.Genom.6.080604.162151  0.388
2005 Murphy WJ, Larkin DM, Everts-van der Wind A, Bourque G, Tesler G, Auvil L, Beever JE, Chowdhary BP, Galibert F, Gatzke L, Hitte C, Meyers SN, Milan D, Ostrander EA, Pape G, et al. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science (New York, N.Y.). 309: 613-7. PMID 16040707 DOI: 10.1126/Science.1111387  0.339
2005 Murphy WJ, Agarwala R, Schäffer AA, Stephens R, Smith C, Crumpler NJ, David VA, O'Brien SJ. A rhesus macaque radiation hybrid map and comparative analysis with the human genome. Genomics. 86: 383-95. PMID 16039092 DOI: 10.1016/J.Ygeno.2005.05.013  0.35
2005 Smith MW, O'Brien SJ. Mapping by admixture linkage disequilibrium: Advances, limitations and guidelines Nature Reviews Genetics. 6: 623-632. PMID 16012528 DOI: 10.1038/Nrg1657  0.356
2005 Troyer JL, Pecon-Slattery J, Roelke ME, Johnson W, VandeWoude S, Vazquez-Salat N, Brown M, Frank L, Woodroffe R, Winterbach C, Winterbach H, Hemson G, Bush M, Alexander KA, Revilla E, et al. Seroprevalence and genomic divergence of circulating strains of feline immunodeficiency virus among Felidae and Hyaenidae species. Journal of Virology. 79: 8282-94. PMID 15956574 DOI: 10.1128/Jvi.79.13.8282-8294.2005  0.345
2005 Schmidt-Küntzel A, Eizirik E, O'Brien SJ, Menotti-Raymond M. Tyrosinase and tyrosinase related protein 1 alleles specify domestic cat coat color phenotypes of the albino and brown loci. The Journal of Heredity. 96: 289-301. PMID 15858157 DOI: 10.1093/Jhered/Esi066  0.326
2005 De La Vega FM, Isaac H, Collins A, Scafe CR, Halldórsson BV, Su X, Lippert RA, Wang Y, Laig-Webster M, Koehler RT, Ziegle JS, Wogan LT, Stevens JF, Leinen KM, Olson SJ, et al. The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern. Genome Research. 15: 454-62. PMID 15781572 DOI: 10.1101/Gr.3241705  0.333
2005 Roca AL, Nash WG, Menninger JC, Murphy WJ, O'Brien SJ. Insertional polymorphisms of endogenous feline leukemia viruses. Journal of Virology. 79: 3979-86. PMID 15767400 DOI: 10.1128/Jvi.79.7.3979-3986.2005  0.354
2005 Teeling EC, Springer MS, Madsen O, Bates P, O'brien SJ, Murphy WJ. A molecular phylogeny for bats illuminates biogeography and the fossil record. Science (New York, N.Y.). 307: 580-4. PMID 15681385 DOI: 10.1126/Science.1105113  0.314
2005 Roca AL, Georgiadis N, O'Brien SJ. Cytonuclear genomic dissociation in African elephant species. Nature Genetics. 37: 96-100. PMID 15592471 DOI: 10.1038/Ng1485  0.342
2005 Menotti-Raymond MA, David VA, Wachter LL, Butler JM, O'Brien SJ. An STR Forensic Typing System for Genetic Individualization of Domestic Cat (Felis catus) Samples Journal of Forensic Sciences. 50: 1-10. DOI: 10.1520/Jfs2004317  0.389
2004 Winkler CA, Hendel H, Carrington M, Smith MW, Nelson GW, O'brien SJ, Phair J, Vlahov D, Jacobson LP, Rappaport J, Vasilescu A, Bertin-Maghit S, An P, Lu W, Andrieu JM, et al. Dominant effects of CCR2-CCR5 haplotypes in HIV-1 disease progression. Journal of Acquired Immune Deficiency Syndromes (1999). 37: 1534-8. PMID 15602133 DOI: 10.1097/01.Qai.0000127353.01578.63  0.314
2004 Luo SJ, Kim JH, Johnson WE, van der Walt J, Martenson J, Yuhki N, Miquelle DG, Uphyrkina O, Goodrich JM, Quigley HB, Tilson R, Brady G, Martelli P, Subramaniam V, McDougal C, et al. Phylogeography and genetic ancestry of tigers (Panthera tigris). Plos Biology. 2: e442. PMID 15583716 DOI: 10.1371/Journal.Pbio.0020442  0.369
2004 Murphy WJ, Pevzner PA, O'Brien SJ. Mammalian phylogenomics comes of age. Trends in Genetics : Tig. 20: 631-9. PMID 15522459 DOI: 10.1016/J.Tig.2004.09.005  0.363
2004 An P, Bleiber G, Duggal P, Nelson G, May M, Mangeat B, Alobwede I, Trono D, Vlahov D, Donfield S, Goedert JJ, Phair J, Buchbinder S, O'Brien SJ, Telenti A, et al. APOBEC3G genetic variants and their influence on the progression to AIDS. Journal of Virology. 78: 11070-6. PMID 15452227 DOI: 10.1128/Jvi.78.20.11070-11076.2004  0.332
2004 Pecon-Slattery J, Pearks Wilkerson AJ, Murphy WJ, O'Brien SJ. Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family felidae as a species tree. Molecular Biology and Evolution. 21: 2299-309. PMID 15329385 DOI: 10.1093/Molbev/Msh241  0.356
2004 Roca AL, Bar-Gal GK, Eizirik E, Helgen KM, Maria R, Springer MS, O'Brien SJ, Murphy WJ. Mesozoic origin for West Indian insectivores. Nature. 429: 649-51. PMID 15190349 DOI: 10.1038/Nature02597  0.328
2004 Oleksyk TK, Goldfarb LG, Sivtseva T, Danilova AP, Osakovsky VL, Shrestha S, O'Brien SJ, Smith MW. Evaluating association and transmission of eight inflammatory genes with Viliuisk encephalomyelitis susceptibility. European Journal of Immunogenetics : Official Journal of the British Society For Histocompatibility and Immunogenetics. 31: 121-8. PMID 15182325 DOI: 10.1111/J.1365-2370.2004.00459.X  0.317
2004 O'Brien SJ, Nelson GW. Human genes that limit AIDS Nature Genetics. 36: 565-574. PMID 15167933 DOI: 10.1038/Ng1369  0.359
2004 Smith MW, Patterson N, Lautenberger JA, Truelove AL, McDonald GJ, Waliszewska A, Kessing BD, Malasky MJ, Scafe C, Le E, De Jager PL, Mignault AA, Yi Z, De The G, Essex M, et al. A high-density admixture map for disease gene discovery in african americans. American Journal of Human Genetics. 74: 1001-13. PMID 15088270 DOI: 10.1086/420856  0.305
2004 Roca AL, Pecon-Slattery J, O'Brien SJ. Genomically intact endogenous feline leukemia viruses of recent origin. Journal of Virology. 78: 4370-5. PMID 15047851 DOI: 10.1128/Jvi.78.8.4370-4375.2004  0.403
2004 Troyer JL, Pecon-Slattery J, Roelke ME, Black L, Packer C, O'Brien SJ. Patterns of feline immunodeficiency virus multiple infection and genome divergence in a free-ranging population of African lions. Journal of Virology. 78: 3777-91. PMID 15016897 DOI: 10.1128/Jvi.78.7.3777-3791.2004  0.355
2004 Winkler C, An P, O'Brien SJ. Patterns of ethnic diversity among the genes that influence AIDS Human Molecular Genetics. 13. PMID 14764621 DOI: 10.1093/Hmg/Ddh075  0.346
2004 Johnson WE, Godoy JA, Palomares F, Delibes M, Fernandes M, Revilla E, O'Brien SJ. Phylogenetic and phylogeographic analysis of Iberian lynx populations. The Journal of Heredity. 95: 19-28. PMID 14757726 DOI: 10.1093/Jhered/Esh006  0.391
2004 Silverberg MJ, Smith MW, Chmiel JS, Detels R, Margolick JB, Rinaldo CR, O'Brien SJ, Muñoz A. Fraction of cases of acquired immunodeficiency syndrome prevented by the interactions of identified restriction gene variants. American Journal of Epidemiology. 159: 232-41. PMID 14742283 DOI: 10.1093/Aje/Kwh036  0.341
2004 Modi WS, Goedert JJ, Strathdee S, Buchbinder S, Detels R, Donfield S, O'Brien SJ, Winkler C. MCP-1-MCP-3-Eotaxin gene cluster influences HIV-1 transmission. Aids (London, England). 17: 2357-65. PMID 14571188 DOI: 10.1097/00002030-200311070-00011  0.312
2004 Kuznetsov SB, Matveeva NM, Murphy WJ, O'Brien SJ, Serov OL. Mapping of 53 loci in American mink (Mustela vison). The Journal of Heredity. 94: 386-91. PMID 14557391 DOI: 10.1093/Jhered/Esg084  0.334
2004 Jones JW, Culver M, David V, Struthers J, Johnson NA, Neves RJ, O'Brien SJ, Hallerman EM. Development and characterization of microsatellite loci in the endangered oyster mussel Epioblasma capsaeformis (Bivalvia: Unionidae) Molecular Ecology Notes. 4: 649-652. DOI: 10.1111/J.1471-8286.2004.00762.X  0.669
2004 Sarno RJ, Villalba L, Bonacic C, Gonzalez B, Zapata B, Mac Donald DW, O'Brien SJ, Johnson WE. Phylogeography and subspecies assessment of vicuñas in Chile and Bolivia utilizing mtDNA and microsatellite markers: implications for vicuña conservation and management Conservation Genetics. 5: 89-102. DOI: 10.1023/B:Coge.0000014014.01531.B6  0.371
2003 Murphy WJ, Bourque G, Tesler G, Pevzner P, O'Brien SJ. Reconstructing the genomic architecture of mammalian ancestors using multispecies comparative maps. Human Genomics. 1: 30-40. PMID 15601531 DOI: 10.1186/1479-7364-1-1-30  0.36
2003 Faden RR, Dawson L, Bateman-House AS, Agnew DM, Bok H, Brock DW, Chakravarti A, Gao XJ, Greene M, Hansen JA, King PA, O'Brien SJ, Sachs DH, Schill KE, Siegel A, et al. Public stem cell banks: considerations of justice in stem cell research and therapy. The Hastings Center Report. 33: 13-27. PMID 14983554 DOI: 10.2307/3527822  0.512
2003 Menotti-Raymond M, David VA, Agarwala R, Schäffer AA, Stephens R, O'Brien SJ, Murphy WJ. Radiation hybrid mapping of 304 novel microsatellites in the domestic cat genome. Cytogenetic and Genome Research. 102: 272-6. PMID 14970716 DOI: 10.1159/000075762  0.383
2003 Dawson L, Bateman-House AS, Mueller Agnew D, Bok H, Brock DW, Chakravarti A, Greene M, King PA, O'Brien SJ, Sachs DH, Schill KE, Siegel A, Solter D, Suter SM, Verfaillie CM, et al. Safety issues in cell-based intervention trials. Fertility and Sterility. 80: 1077-85. PMID 14607552 DOI: 10.1016/S0015-0282(03)02218-0  0.531
2003 Uphyrkina O, O'Brien SJ. Applying molecular genetic tools to the conservation and action plan for the critically endangered Far Eastern leopard (Panthera pardus orientalis) Comptes Rendus - Biologies. 326. PMID 14558456 DOI: 10.1016/S1631-0691(03)00044-1  0.326
2003 O'Brien SJ, Murphy WJ. A dog's breakfast? Science. 301: 1854-1855. PMID 14512608 DOI: 10.1126/Science.1090531  0.317
2003 Murphy WJ, Frönicke L, O'Brien SJ, Stanyon R. The origin of human chromosome 1 and its homologs in placental mammals. Genome Research. 13: 1880-8. PMID 12869576 DOI: 10.1101/Gr.1022303  0.324
2003 Yuhki N, Beck T, Stephens RM, Nishigaki Y, Newmann K, O'Brien SJ. Comparative genome organization of human, murine, and feline MHC class II region. Genome Research. 13: 1169-79. PMID 12743023 DOI: 10.1101/Gr.976103  0.326
2003 Modi WS, O'Brien TR, Vlahov D, Buchbinder S, Gomperts E, Phair J, O'Brien SJ, Winkler C. Haplotype diversity in the interleukin-4 gene is not associated with HIV-1 transmission and AIDS progression. Immunogenetics. 55: 157-64. PMID 12715242 DOI: 10.1007/S00251-003-0541-5  0.348
2003 Menotti-Raymond M, David VA, Roelke ME, Chen ZQ, Menotti KA, Sun S, Schäffer AA, Tomlin JF, Agarwala R, O'Brien SJ, Murphy WJ. Second-generation integrated genetic linkage/radiation hybrid maps of the domestic cat (Felis catus). The Journal of Heredity. 94: 95-106. PMID 12692169 DOI: 10.1093/Jhered/Esg008  0.34
2003 Eizirik E, Yuhki N, Johnson WE, Menotti-Raymond M, Hannah SS, O'Brien SJ. Molecular genetics and evolution of melanism in the cat family. Current Biology : Cb. 13: 448-53. PMID 12620197 DOI: 10.1016/S0960-9822(03)00128-3  0.392
2003 Uphyrkina O, Miquelle D, Quigley H, Driscoll C, O'Brien SJ. Conservation genetics of the Far Eastern leopard (Panthera pardus orientalis). The Journal of Heredity. 93: 303-11. PMID 12547918 DOI: 10.1093/Jhered/93.5.303  0.351
2003 Carrington M, O'Brien SJ. The Influence of HLA Genotype on AIDS Annual Review of Medicine. 54: 535-551. PMID 12525683 DOI: 10.1146/Annurev.Med.54.101601.152346  0.336
2003 Lento GM, Baker CS, David V, Yuhki N, Gales NJ, O'Brien SJ. Automated single-strand conformation polymorphism reveals low diversity of a Major Histocompatibility Complex Class II gene in the threatened New Zealand sea lion Molecular Ecology Notes. 3: 346-349. DOI: 10.1046/J.1471-8286.2003.00445.X  0.336
2002 Comstock KE, Georgiadis N, Pecon-Slattery J, Roca AL, Ostrander EA, O'Brien SJ, Wasser SK. Patterns of molecular genetic variation among African elephant populations. Molecular Ecology. 11: 2489-98. PMID 12453234 DOI: 10.1046/J.1365-294X.2002.01615.X  0.361
2002 O'Brien SJ, Menotti-Raymond M, Murphy WJ, Yuhki N. The Feline Genome Project. Annual Review of Genetics. 36: 657-86. PMID 12359739 DOI: 10.1146/Annurev.Genet.36.060602.145553  0.372
2002 Palomares F, Godoy JA, Piriz A, O'Brien SJ, Johnson WE. Faecal genetic analysis to determine the presence and distribution of elusive carnivores: Design and feasibility for the Iberian lynx Molecular Ecology. 11: 2171-2182. PMID 12296958 DOI: 10.1046/J.1365-294X.2002.01608.X  0.345
2002 Dean M, Carrington M, O'Brien SJ. Balanced polymorphism selected by genetic versus infectious human disease Annual Review of Genomics and Human Genetics. 3: 263-292. PMID 12142357 DOI: 10.1146/Annurev.Genom.3.022502.103149  0.352
2002 An P, Nelson GW, Wang L, Donfield S, Goedert JJ, Phair J, Vlahov D, Buchbinder S, Farrar WL, Modi W, O'Brien SJ, Winkler CA. Modulating influence on HIV/AIDS by interacting RANTES gene variants. Proceedings of the National Academy of Sciences of the United States of America. 99: 10002-7. PMID 12114533 DOI: 10.1073/Pnas.142313799  0.334
2002 Copeland NG, Jenkins NA, O'Brien SJ. Mmu 16 - Comparative genomic highlights Science. 296: 1617-1618. PMID 12040165 DOI: 10.1126/Science.1073127  0.314
2002 Murphy WJ, Page JE, Smith C, Desrosiers RC, O'Brien SJ. A radiation hybrid mapping panel for the rhesus macaque. The Journal of Heredity. 92: 516-9. PMID 11948222 DOI: 10.1093/Jhered/92.6.516  0.339
2002 Driscoll CA, Menotti-Raymond M, Nelson G, Goldstein D, O'Brien SJ. Genomic Microsatellites as Evolutionary Chronometers: A Test in Wild Cats Genome Research. 12: 414-423. PMID 11875029 DOI: 10.1101/Gr.185702  0.752
2002 Martinez-Cruz B, David VA, Godoy JA, Negro JJ, O'Brien SJ, Johnson WE. Eighteen polymorphic microsatellite markers for the highly endangered Spanish imperial eagle (Aquila adalberti) and related species Molecular Ecology Notes. 2: 323-326. DOI: 10.1046/J.1471-8286.2002.00231.X  0.342
2001 Jae-Heup K, Eizirik E, O'Brien SJ, Johnson WE. Structure and patterns of sequence variation in the mitochondrial DNA control region of the great cats. Mitochondrion. 1: 279-92. PMID 16120284 DOI: 10.1016/S1567-7249(01)00027-7  0.328
2001 Carrington M, Nelson G, O'Brien SJ. Considering genetic profiles in functional studies of immune responsiveness to HIV-1 Immunology Letters. 79: 131-140. PMID 11595300 DOI: 10.1016/S0165-2478(01)00275-9  0.33
2001 Roca AL, Georgiadis N, Pecon-Slattery J, O'Brien SJ. Genetic evidence for two species of elephant in Africa. Science (New York, N.Y.). 293: 1473-7. PMID 11520983 DOI: 10.1126/Science.1059936  0.375
2001 O'Brien SJ, Eizirik E, Murphy WJ. Genomics. On choosing mammalian genomes for sequencing. Science (New York, N.Y.). 292: 2264-6. PMID 11423643 DOI: 10.1126/Science.1059393  0.339
2001 Murphy WJ, Stanyon R, O'Brien SJ. Evolution of mammalian genome organization inferred from comparative gene mapping Genome Biology. 2. PMID 11423011 DOI: 10.1186/Gb-2001-2-6-Reviews0005  0.374
2001 Eizirik E, Murphy WJ, O'Brien SJ. Molecular dating and biogeography of the early placental mammal radiation. The Journal of Heredity. 92: 212-9. PMID 11396581 DOI: 10.1093/Jhered/92.2.212  0.33
2001 Culver M, Menotti-Raymond MA, O'Brien SJ. Patterns of size homoplasy at 10 microsatellite loci in pumas (Puma concolor). Molecular Biology and Evolution. 18: 1151-6. PMID 11371606 DOI: 10.1093/Oxfordjournals.Molbev.A003889  0.616
2001 Eizirik E, Kim JH, Menotti-Raymond M, Crawshaw PG, O'Brien SJ, Johnson WE. Phylogeography, population history and conservation genetics of jaguars (Panthera onca, Mammalia, Felidae). Molecular Ecology. 10: 65-79. PMID 11251788 DOI: 10.1046/J.1365-294X.2001.01144.X  0.384
2001 Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ. Molecular phylogenetics and the origins of placental mammals. Nature. 409: 614-8. PMID 11214319 DOI: 10.1038/35054550  0.338
2001 Beck TW, Menninger J, Voigt G, Newmann K, Nishigaki Y, Nash WG, Stephens RM, Wang Y, de Jong PJ, O'Brien SJ, Yuhki N. Comparative feline genomics: a BAC/PAC contig map of the major histocompatibility complex class II region. Genomics. 71: 282-95. PMID 11170745 DOI: 10.1006/Geno.2000.6416  0.353
2001 Lu Z, Johnson WE, Menotti-Raymond M, Yuhki N, Martenson JS, Mainka S, Shi-Qiang H, Zhihe Z, Li G, Pan W, Mao X, O'Brien SJ. Patterns of genetic diversity in remaining giant panda populations Conservation Biology. 15: 1596-1607. DOI: 10.1046/J.1523-1739.2001.00086.X  0.358
2001 Sarno RJ, Franklin WL, O'Brien SJ, Johnson WE. Patterns of mtDNA and microsatellite variation in an island and mainland population of guanacos in southern Chile Animal Conservation. 4: 93-101. DOI: 10.1017/S1367943001001123  0.345
2000 O'Brien SJ, Moore JP. The effect of genetic variation in chemokines and their receptors on HIV transmission and progression to AIDS Immunological Reviews. 177: 99-111. PMID 11138790 DOI: 10.1034/J.1600-065X.2000.17710.X  0.333
2000 O'Brien SJ, Nelson GW, Winkler CA, Smith MW. Polygenic and multifactorial disease gene association in man: Lessons from AIDS. Annual Review of Genetics. 34: 563-591. PMID 11092839 DOI: 10.1146/Annurev.Genet.34.1.563  0.368
2000 Culver M, Johnson WE, Pecon-Slattery J, O'Brien SJ. Genomic ancestry of the American puma (Puma concolor) Journal of Heredity. 91: 186-197. PMID 10833043 DOI: 10.1093/Jhered/91.3.186  0.688
2000 Murphy WJ, Sun S, Chen Z, Yuhki N, Hirschmann D, Menotti-Raymond M, O'Brien SJ. A radiation hybrid map of the cat genome: implications for comparative mapping. Genome Research. 10: 691-702. PMID 10810092 DOI: 10.1101/Gr.10.5.691  0.371
2000 Slattery JP, Sanner-Wachter L, O'Brien SJ. Novel gene conversion between X-Y homologues located in the nonrecombining region of the Y chromosome in Felidae (Mammalia) Proceedings of the National Academy of Sciences of the United States of America. 97: 5307-5312. PMID 10805789 DOI: 10.1073/Pnas.97.10.5307  0.311
2000 Alexander L, Weiskopf E, Greenough TC, Gaddis NC, Auerbach MR, Malim MH, O'Brien SJ, Walker BD, Sullivan JL, Desrosiers RC. Unusual polymorphisms in human immunodeficiency virus type 1 associated with nonprogressive infection. Journal of Virology. 74: 4361-76. PMID 10756051 DOI: 10.1128/Jvi.74.9.4361-4376.2000  0.357
2000 Lautenberger JA, Stephens JC, O'Brien SJ, Smith MW. Significant admixture linkage disequilibrium across 30 cM around the FY locus in African Americans. American Journal of Human Genetics. 66: 969-78. PMID 10712211 DOI: 10.1086/302820  0.346
2000 Murphy WJ, Sun S, Chen ZQ, Pecon-Slattery J, O'Brien SJ. Extensive conservation of sex chromosome organization between cat and human revealed by parallel radiation hybrid mapping. Genome Research. 9: 1223-30. PMID 10613845 DOI: 10.1101/Gr.9.12.1223  0.314
2000 Su B, Jin L, Hu F, Xiao J, Luo J, Lu D, Zhang W, Chu J, Du R, Geng Z, Qiu X, Xue J, Tan J, O'Brien SJ, Chakraborty R. Distribution of two HIV-1-resistant polymorphisms (SDF1-3'A and CCR2-64I) in East Asian and world populations and its implication in AIDS epidemiology. American Journal of Human Genetics. 65: 1047-53. PMID 10486323 DOI: 10.1086/302568  0.319
2000 Carrington M, Dean M, Martin MP, O'Brien SJ. Genetics of HIV-1 infection: chemokine receptor CCR5 polymorphism and its consequences. Human Molecular Genetics. 8: 1939-45. PMID 10469847 DOI: 10.1093/Hmg/8.10.1939  0.32
1999 Bream JH, Young HA, Rice N, Martin MP, Smith MW, Carrington M, O'Brien SJ. CCR5 promoter alleles and specific DNA binding factors. Science (New York, N.Y.). 284: 223. PMID 15224670 DOI: 10.1126/Science.284.5412.223A  0.309
1999 McKenzie L, Pecon-Slattery J, Carrington M, O'Brien SJ. Taxonomic hierarchy of HLA class I allele sequences Genes and Immunity. 1: 120-129. PMID 11196658 DOI: 10.1038/Sj.Gene.6363648  0.329
1999 Caetano AR, Shiue YL, Lyons LA, O'Brien SJ, Laughlin TF, Bowling AT, Murray JD. A comparative gene map of the horse (Equus caballus). Genome Research. 9: 1239-49. PMID 10613847 DOI: 10.1101/Gr.9.12.1239  0.371
1999 O'Brien SJ, Stanyon R. Ancestral primate viewed Nature. 402: 365-366. PMID 10586870 DOI: 10.1038/46450  0.367
1999 O'Brien SJ, Eisenberg JF, Miyamoto M, Hedges SB, Kumar S, Wilson DE, Menotti-Raymond M, Murphy WJ, Nash WG, Lyons LA, Menninger JC, Stanyon R, Wienberg J, Copeland NG, Jenkins NA, et al. Genome maps 10. Comparative genomics. Mammalian radiations. Wall chart. Science (New York, N.Y.). 286: 463-78. PMID 10577209 DOI: 10.1126/Science.286.5439.463  0.393
1999 Caetano AR, Lyons LA, Laughlin TF, O'Brien SJ, Murray JD, Bowling AT. Equine synteny mapping of comparative anchor tagged sequences (CATS) from human Chromosome 5. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 10: 1082-4. PMID 10556427 DOI: 10.1007/S003359901165  0.318
1999 Waits LP, Sullivan J, O'Brien SJ, Ward RH. Rapid radiation events in the family Ursidae indicated by likelihood phylogenetic estimation from multiple fragments of mtDNA. Molecular Phylogenetics and Evolution. 13: 82-92. PMID 10508542 DOI: 10.1006/Mpev.1999.0637  0.337
1999 Chen ZQ, Lautenberger JA, Lyons LA, McKenzie L, O'Brien SJ. A human genome map of comparative anchor tagged sequences Journal of Heredity. 90: 477-484. PMID 10485137 DOI: 10.1093/Jhered/90.4.477  0.315
1999 Hoelzel AR, Stephens JC, O'Brien SJ. Molecular genetic diversity and evolution at the MHC DQB locus in four species of pinnipeds. Molecular Biology and Evolution. 16: 611-8. PMID 10335654 DOI: 10.1093/Oxfordjournals.Molbev.A026143  0.656
1999 O'Brien SJ, Yuhki N. Comparative genome organization of the major histocompatibility complex: Lessons from the Felidae Immunological Reviews. 167: 133-144. PMID 10319256 DOI: 10.1111/J.1600-065X.1999.Tb01387.X  0.359
1999 Menotti-Raymond M, David VA, Lyons LA, Schäffer AA, Tomlin JF, Hutton MK, O'Brien SJ. A genetic linkage map of microsatellites in the domestic cat (Felis catus). Genomics. 57: 9-23. PMID 10191079 DOI: 10.1006/Geno.1999.5743  0.367
1999 Murphy WJ, Menotti-Raymond M, Lyons LA, Thompson MA, O'Brien SJ. Development of a feline whole genome radiation hybrid panel and comparative mapping of human chromosome 12 and 22 loci Genomics. 57: 1-8. PMID 10191078 DOI: 10.1006/Geno.1998.5695  0.362
1999 Carrington M, Nelson GW, Martin MP, Kissner T, Vlahov D, Goedert JJ, Kaslow R, Buchbinder S, Hoots K, O'Brien SJ. HLA and HIV-1: heterozygote advantage and B*35-Cw*04 disadvantage. Science (New York, N.Y.). 283: 1748-52. PMID 10073943 DOI: 10.1126/Science.283.5408.1748  0.313
1999 Lyons LA, Kehler JS, O'Brien SJ. Development of comparative anchor tagged sequences (CATS) for canine genome mapping Journal of Heredity. 90: 15-26. PMID 9987897 DOI: 10.1093/Jhered/90.1.15  0.367
1999 O'Brien SJ, Menotti-Raymond M, Murphy WJ, Nash WG, Wienberg J, Stanyon R, Copeland NG, Jenkins NA, Womack JE, Marshall Graves JA. The Promise of Comparative Genomics in Mammals Science. 286: 458-481. DOI: 10.1126/Science.286.5439.458  0.394
1998 Nash WG, Wienberg J, Ferguson-Smith MA, Menninger JC, O'Brien SJ. Comparative genomics: tracking chromosome evolution in the family ursidae using reciprocal chromosome painting. Cytogenetic and Genome Research. 83: 182-192. PMID 10072575 DOI: 10.1159/000015176  0.335
1998 Carpenter MA, Appel MJ, Roelke-Parker ME, Munson L, Hofer H, East M, O'Brien SJ. Genetic characterization of canine distemper virus in Serengeti carnivores. Veterinary Immunology and Immunopathology. 65: 259-66. PMID 9839878 DOI: 10.1016/S0165-2427(98)00159-7  0.357
1998 Carpenter MA, Brown EW, MacDonald DW, O'brien SJ. Phylogeographic patterns of feline immunodeficiency virus genetic diversity in the domestic cat. Virology. 251: 234-43. PMID 9837787 DOI: 10.1006/Viro.1998.9402  0.417
1998 Martin MP, Dean M, Smith MW, Winkler C, Gerrard B, Michael NL, Lee B, Doms RW, Margolick J, Buchbinder S, Goedert JJ, O'Brien TR, Hilgartner MW, Vlahov D, O'Brien SJ, et al. Genetic acceleration of AIDS progression by a promoter variant of CCR5. Science (New York, N.Y.). 282: 1907-11. PMID 9836644 DOI: 10.1126/Science.282.5395.1907  0.362
1998 Hendel H, Hénon N, Lebuanec H, Lachgar A, Poncelet H, Caillat-Zucman S, Winkler CA, Smith MW, Kenefic L, O'Brien S, Lu W, Andrieu JM, Zagury D, Schächter F, Rappaport J, et al. Distinctive effects of CCR5, CCR2, and SDF1 genetic polymorphisms in AIDS progression. Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology : Official Publication of the International Retrovirology Association. 19: 381-6. PMID 9833747 DOI: 10.1097/00042560-199812010-00009  0.349
1998 Eizirik E, Bonatto SL, Johnson WE, Crawshaw PG, Vié JC, Brousset DM, O'Brien SJ, Salzano FM. Phylogeographic patterns and evolution of the mitochondrial DNA control region in two neotropical cats (Mammalia, felidae). Journal of Molecular Evolution. 47: 613-24. PMID 9797412 DOI: 10.1007/Pl00006418  0.379
1998 O'brien SJ. AIDS: A role for host genes Hospital Practice. 33: 53-79. PMID 9679506 DOI: 10.3810/Hp.1998.07.96  0.339
1998 Johnson WE, Culver M, Iriarte JA, Eizirik E, Seymour KL, O'Brien SJ. Tracking the evolution of the elusive Andean mountain cat (Oreailurus jacobita) from mitochondrial DNA. The Journal of Heredity. 89: 227-32. PMID 9656464 DOI: 10.1093/Jhered/89.3.227  0.667
1998 Stephens JC, Reich DE, Goldstein DB, Shin HD, Smith MW, Carrington M, Winkler C, Huttley GA, Allikmets R, Schriml L, Gerrard B, Malasky M, Ramos MD, Morlot S, Tzetis M, et al. Dating the origin of the CCR5-Delta32 AIDS-resistance allele by the coalescence of haplotypes. American Journal of Human Genetics. 62: 1507-15. PMID 9585595 DOI: 10.1086/301867  0.342
1998 Cho K, Youn H, Okuda M, Satoh H, Cevario S, O'Brien SJ, Watari T, Tsujimoto H, Hasegawa A. Cloning and mapping of cat ( Felis catus ) immunoglobulin and T-cell receptor genes Immunogenetics. 47: 226-233. PMID 9435341 DOI: 10.1007/S002510050352  0.354
1998 Winkler C, Modi W, Smith MW, Nelson GW, Wu X, Carrington M, Dean M, Honjo T, Tashiro K, Yabe D, Buchbinder S, Vittinghoff E, Goedert JJ, O'Brien TR, Jacobson LP, et al. Genetic restriction of AIDS pathogenesis by an SDF-1 chemokine gene variant. ALIVE Study, Hemophilia Growth and Development Study (HGDS), Multicenter AIDS Cohort Study (MACS), Multicenter Hemophilia Cohort Study (MHCS), San Francisco City Cohort (SFCC) Science (New York, N.Y.). 279: 389-93. PMID 9430590 DOI: 10.1126/Science.279.5349.389  0.365
1997 O'Brien SJ, Cevario SJ, Martenson JS, Thompson MA, Nash WG, Chang E, Graves JA, Spencer JA, Cho KW, Tsujimoto H, Lyons LA. Comparative gene mapping in the domestic cat (Felis catus). The Journal of Heredity. 88: 408-14. PMID 9378918 DOI: 10.1093/Oxfordjournals.Jhered.A023127  0.363
1997 Okuda M, Minehata K, Setoguchi A, Cho KW, Nakamura N, Nishigaki K, Watari T, Cevario S, O'Brien SJ, Tsujimoto H, Hasegawa A. Cloning and chromosome mapping of the feline genes p21WAF1 and p27Kip1. Gene. 198: 141-7. PMID 9370275 DOI: 10.1016/S0378-1119(97)00304-1  0.344
1997 O'Brien SJ, Wienberg J, Lyons LA. Comparative genomics: Lessons from cats Trends in Genetics. 13: 393-399. PMID 9351340 DOI: 10.1016/S0168-9525(97)01297-3  0.36
1997 An P, Wei L, Wu X, Yuhki N, O'Brien SJ, Winkler C. Evolutionary Analysis Of The 5'-Terminal Region Of Hepatitis G Virus Isolated From Different Regions In China Journal of General Virology. 78: 2477-2482. PMID 9349467 DOI: 10.1099/0022-1317-78-10-2477  0.305
1997 Smith MW, Dean M, Carrington M, Winkler C, Huttley GA, Lomb DA, Goedert JJ, O'Brien TR, Jacobson LP, Kaslow R, Buchbinder S, Vittinghoff E, Vlahov D, Hoots K, Hilgartner MW, et al. Contrasting genetic influence of CCR2 and CCR5 variants on HIV-1 infection and disease progression. Hemophilia Growth and Development Study (HGDS), Multicenter AIDS Cohort Study (MACS), Multicenter Hemophilia Cohort Study (MHCS), San Francisco City Cohort (SFCC), ALIVE Study. Science (New York, N.Y.). 277: 959-65. PMID 9252328 DOI: 10.1126/Science.277.5328.959  0.327
1997 VandeWoude S, O'Brien SJ, Langelier K, Hardy WD, Slattery JP, Zuckerman EE, Hoover EA. Growth of lion and puma lentiviruses in domestic cat cells and comparisons with FIV. Virology. 233: 185-92. PMID 9201228 DOI: 10.1006/Viro.1997.8587  0.33
1997 Taylor AC, Graves JM, Murray ND, O'Brien SJ, Yuhki N, Sherwin B. Conservation genetics of the koala (Phascolarctos cinereus): low mitochondrial DNA variation amongst southern Australian populations. Genetical Research. 69: 25-33. PMID 9164173 DOI: 10.1017/S0016672397002607  0.364
1997 Giri A, Slattery JP, Heneine W, Gessain A, Rivadeneira E, Desrosiers RC, Rosen L, Anthony R, Pamungkas J, Iskandriati D, Richards AL, Herve V, McClure H, O'Brien SJ, Franchini G. The tax gene sequences form two divergent monophyletic lineages corresponding to types I and II of simian and human T-cell leukemia/lymphotropic viruses Virology. 231: 96-104. PMID 9143307 DOI: 10.1006/Viro.1997.8511  0.339
1997 Lopez JV, Culver M, Stephens JC, Johnson WE, O'Brien SJ. Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals. Molecular Biology and Evolution. 14: 277-86. PMID 9066795 DOI: 10.1093/Oxfordjournals.Molbev.A025763  0.667
1997 Lyons LA, Laughlin TF, Copeland NG, Jenkins NA, Womack JE, O'Brien SJ. Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes Nature Genetics. 15: 47-56. PMID 8988168 DOI: 10.1038/Ng0197-47  0.351
1996 Masuda R, Lopez JV, Slattery JP, Yuhki N, O'Brien SJ. Molecular Phylogeny of Mitochondrial Cytochrome b and 12S rRNA Sequences in the Felidae: Ocelot and Domestic Cat Lineages Molecular Phylogenetics and Evolution. 6: 351-365. PMID 8975691 DOI: 10.1006/Mpev.1996.0085  0.353
1996 Zhi L, Karesh WB, Janczewski DN, Frazier-Taylor H, Sajuthi D, Gombek F, Andau M, Martenson JS, O'Brien SJ. Genomic differentiation among natural populations of orang-utan (Pongo pygmaeus). Current Biology : Cb. 6: 1326-36. PMID 8939569 DOI: 10.1016/S0960-9822(02)70719-7  0.391
1996 Carpenter MA, Brown EW, Culver M, Johnson WE, Pecon-Slattery J, Brousset D, O'Brien SJ. Genetic and phylogenetic divergence of feline immunodeficiency virus in the puma (Puma concolor). Journal of Virology. 70: 6682-93. PMID 8794304 DOI: 10.1128/Jvi.70.10.6682-6693.1996  0.674
1996 Dean M, Carrington M, Winkler C, Huttley GA, Smith MW, Allikmets R, Goedert JJ, Buchbinder SP, Vittinghoff E, Gomperts E, Donfield S, Vlahov D, Kaslow R, Saah A, Rinaldo C, et al. Genetic restriction of HIV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, ALIVE Study. Science (New York, N.Y.). 273: 1856-62. PMID 8791590 DOI: 10.1126/Science.273.5283.1856  0.339
1996 Lopez JV, Cevario S, O'Brien SJ. Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome Genomics. 33: 229-246. PMID 8660972 DOI: 10.1006/Geno.1996.0188  0.37
1996 Kaslow RA, Carrington M, Apple R, Park L, Muñoz A, Saah AJ, Goedert JJ, Winkler C, O'Brien SJ, Rinaldo C, Detels R, Blattner W, Phair J, Erlich H, Mann DL. Influence of combinations of human major histocompatibility complex genes on the course of HIV-1 infection. Nature Medicine. 2: 405-11. PMID 8597949 DOI: 10.1038/Nm0496-405  0.309
1996 Johnson WE, Dratch PA, Martenson JS, O'Brien SJ. Resolution of Recent Radiations Within Three Evolutionary Lineages of Felidae using Mitochondrial Restriction Fragment Length Polymorphism Variation Journal of Mammalian Evolution. 3: 97-120. DOI: 10.1007/Bf01454358  0.318
1995 Carpenter MA, O'Brien SJ. Coadaptation and immunodeficiency virus: lessons from the Felidae. Current Opinion in Genetics & Development. 5: 739-45. PMID 8745072 DOI: 10.1016/0959-437X(95)80006-Q  0.348
1995 Menotti-Raymond M, O'Brien SJ. Hypervariable genomic variation to reconstruct the natural history of populations: Lessons from the big cats Electrophoresis. 16: 1771-1774. PMID 8582370 DOI: 10.1002/Elps.11501601293  0.337
1995 Slattery JP, O'brien SJ. Molecular phylogeny of the red panda (Ailurus fulgens) Journal of Heredity. 86: 413-422. PMID 8568209 DOI: 10.1093/Oxfordjournals.Jhered.A111615  0.352
1995 Jordan K, O'Brien SJ, Johnson KH, O'Brien TD. Assignment of islet amyloid polypeptide (IAPP) gene to feline chromosome B4 using the polymerase chain reaction technique on feline-rodent hybrid cell lines. Veterinary Pathology. 32: 195-7. PMID 7771063 DOI: 10.1177/030098589503200216  0.307
1995 Menotti-Raymond MA, O'Brien SJ. Evolutionary conservation of ten microsatellite loci in four species of Felidae. The Journal of Heredity. 86: 319-22. PMID 7658003 DOI: 10.1093/Oxfordjournals.Jhered.A111594  0.381
1995 Janczewski DN, Modi WS, Stephens JC, O'Brien SJ. Molecular evolution of mitochondrial 12S RNA and cytochrome b sequences in the pantherine lineage of Felidae. Molecular Biology and Evolution. 12: 690-707. PMID 7544865 DOI: 10.1093/Oxfordjournals.Molbev.A040232  0.355
1994 Okuda M, Umeda A, Matsumoto Y, Momoi Y, Watari T, Goitsuka R, O'Brien SJ, Tsujimoto H, Hasegawa A. Molecular cloning and chromosomal mapping of feline p53 tumor suppressor gene. The Journal of Veterinary Medical Science. 55: 801-5. PMID 8286534 DOI: 10.1292/Jvms.55.801  0.305
1994 Yuhki N, O'Brien SJ. Exchanges of short polymorphic DNA segments predating speciation in feline major histocompatibility complex class I genes Journal of Molecular Evolution. 39: 22-33. PMID 8064870 DOI: 10.1007/Bf00178246  0.359
1994 Brown EW, Yuhki N, Packer C, O'Brien SJ. A lion lentivirus related to feline immunodeficiency virus: Epidemiologic and phylogenetic aspects Journal of Virology. 68: 5953-5968. PMID 8057472 DOI: 10.1128/Jvi.68.9.5953-5968.1994  0.383
1994 Langley RJ, Hirsch VM, O'Brien SJ, Adger-Johnson D, Goeken RM, Olmsted RA. Nucleotide sequence analysis of puma lentivirus (PLV-14): genomic organization and relationship to other lentiviruses. Virology. 202: 853-64. PMID 8030248 DOI: 10.1006/Viro.1994.1407  0.351
1994 Glavač D, Ravnik-Glavač M, O'Brien SJ, Dean M. Polymorphisms in the 3′ untranslated region of the IκB/MAD-3 (NFKBI) gene located on chromosome 14 Human Genetics. 93: 694-696. PMID 8005595 DOI: 10.1007/Bf00201573  0.336
1994 Seuánez HN, Alves G, O'Brien SJ. Gene mapping in the spider monkey (Ateles paniscus chamek). The Journal of Heredity. 85: 466-73. PMID 7995927 DOI: 10.1093/Oxfordjournals.Jhered.A111502  0.377
1994 Pecon Slattery J, Johnson WE, Goldman D, O'Brien SJ. Phylogenetic reconstruction of South American felids defined by protein electrophoresis Journal of Molecular Evolution. 39: 296-305. PMID 7932791 DOI: 10.1007/Bf00160153  0.35
1994 Hoelzel AR, Lopez JV, Dover GA, O'Brien SJ. Rapid evolution of a heteroplasmic repetitive sequence in the mitochondrial DNA control region of carnivores. Journal of Molecular Evolution. 39: 191-9. PMID 7932782 DOI: 10.1007/Bf00163807  0.64
1994 Lopez JV, Yuhki N, Masuda R, Modi W, O'Brien SJ. Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. Journal of Molecular Evolution. 39: 174-90. PMID 7932781 DOI: 10.1007/Bf00163806  0.389
1994 O'Brien SJ. A role for molecular genetics in biological conservation Proceedings of the National Academy of Sciences of the United States of America. 91: 5748-5755. PMID 7912434 DOI: 10.1073/Pnas.91.13.5748  0.383
1994 O'Brien SJ. Genetic and phylogenetic analyses of endangered species Annual Review of Genetics. 28: 467-489. PMID 7893136 DOI: 10.1146/Annurev.Ge.28.120194.002343  0.347
1994 Briscoe D, Stephens JC, O'Brien SJ. Linkage Disequilibrium in Admixed Populations: Applications in Gene Mapping Journal of Heredity. 85: 59-63. DOI: 10.1093/Oxfordjournals.Jhered.A111397  0.35
1994 Lyons LA, Raymond MM, O'Brien SJ. Comparative Genomics: The Next Generation Animal Biotechnology. 5: 103-111. DOI: 10.1080/10495399409525811  0.349
1993 O'brien SJ, Womack JE, Lyons LA, Moore KJ, Jenkins NA, Copeland NG. Anchored reference loci for comparative genome mapping in mammals Nature Genetics. 3: 103-112. PMID 8499943 DOI: 10.1038/Ng0293-103  0.372
1993 Menotti-Raymond M, O'Brien SJ. Dating the genetic bottleneck of the African cheetah Proceedings of the National Academy of Sciences of the United States of America. 90: 3172-3176. PMID 8475057 DOI: 10.1073/Pnas.90.8.3172  0.383
1993 Baker CS, Gilbert DA, Weinrich MT, Lambertsen R, Calambokidis J, Mcardle B, Chambers GK, O'brien SJ. Population characteristics of DNA fingerprints in humpback whales (Megaptera novaeangliae) Journal of Heredity. 84: 281-290. PMID 8340617 DOI: 10.1093/Oxfordjournals.Jhered.A111340  0.474
1993 Anagnou NP, Seuanez H, Modi W, O'Brien SJ, Papamatheakis J, Moschonas NK. Chromosomal mapping of two members of the human glutamate dehydrogenase (GLUD) gene family to chromosomes 10q22.3-q23 and Xq22-q23. Human Heredity. 43: 351-6. PMID 8288265 DOI: 10.1159/000154158  0.301
1993 O'Brien SJ, Clegg MT. Genomes and evolution. Current Opinion in Genetics & Development. 3: 835-6. PMID 8118206 DOI: 10.1016/0959-437X(93)90001-6  0.317
1993 Hoelzel AR, Halley J, O'Brien SJ, Campagna C, Arnbom T, Le Boeuf B, Ralls K, Dover GA. Elephant seal genetic variation and the use of simulation models to investigate historical population bottlenecks. The Journal of Heredity. 84: 443-9. PMID 7505788 DOI: 10.1093/Oxfordjournals.Jhered.A111370  0.668
1993 O'Brien SJ. The genomics generation Current Biology. 3: 395-397. DOI: 10.1016/0960-9822(93)90111-Z  0.306
1992 Goldman D, O'Brien SJ, Lucas-Derse S, Dean M. Linkage mapping of human polymorphic proteins identified by two-dimensional electrophoresis. Genomics. 11: 875-84. PMID 1686020 DOI: 10.1016/0888-7543(91)90010-C  0.302
1992 Stephens JC, Gilbert DA, Yuhki N, O'Brien SJ. Estimation of heterozygosity for single-probe multilocus DNA fingerprints. Molecular Biology and Evolution. 9: 729-43. PMID 1630309 DOI: 10.1093/Oxfordjournals.Molbev.A040755  0.333
1992 Janczewski DN, Yuhki N, Gilbert DA, Jefferson GT, O'Brien SJ. Molecular phylogenetic inference from saber-toothed cat fossils of Rancho La Brea Proceedings of the National Academy of Sciences of the United States of America. 89: 9769-9773. PMID 1409696 DOI: 10.1073/Pnas.89.20.9769  0.349
1992 Kelley MJ, Pech M, Seuanez HN, Rubin JS, O'Brien SJ, Aaronson SA. Emergence of the keratinocyte growth factor multigene family during the great ape radiation. Proceedings of the National Academy of Sciences of the United States of America. 89: 9287-91. PMID 1409637 DOI: 10.1073/Pnas.89.19.9287  0.353
1991 O'brien SJ, Mayr E. Bureaucratic mischief: recognizing endangered species and subspecies. Science (New York, N.Y.). 251: 1187-8. PMID 17799277 DOI: 10.1126/Science.251.4998.1187  0.369
1991 Wayne RK, Van Valkenburgh B, O'Brien SJ. Molecular distance and divergence time in carnivores and primates. Molecular Biology and Evolution. 8: 297-319. PMID 2072860 DOI: 10.1093/Oxfordjournals.Molbev.A040651  0.32
1991 Gilbert DA, Packer C, Pusey AE, Stephens JC, O'Brien SJ. Analytical DNA fingerprinting in lions: parentage, genetic diversity, and kinship. The Journal of Heredity. 82: 378-86. PMID 1940281 DOI: 10.1093/Oxfordjournals.Jhered.A111107  0.365
1991 Gardner MB, Kozak CA, O'Brien SJ. The Lake Casitas wild mouse: evolving genetic resistance to retroviral disease. Trends in Genetics. 7: 22-27. PMID 1848377 DOI: 10.1016/0168-9525(91)90017-K  0.346
1991 O'Brien SJ. Mammalian genome mapping: lessons and prospects Current Opinion in Genetics and Development. 1: 105-111. PMID 1840868 DOI: 10.1016/0959-437X(91)80050-V  0.356
1991 Masuda R, Yuhki N, O'Brien SJ. Molecular cloning, chromosomal assignment, and nucleotide sequence of the feline homeobox HOX3A Genomics. 11: 1007-1013. PMID 1686012 DOI: 10.1016/0888-7543(91)90026-B  0.34
1991 Frolova EI, Dolganov GM, Mazo IA, Smirnov DV, Copeland P, Stewart C, O'Brien SJ, Dean M. Linkage mapping of the human CSF2 and IL3 genes Proceedings of the National Academy of Sciences of the United States of America. 88: 4821-4824. PMID 1675789 DOI: 10.1073/Pnas.88.11.4821  0.345
1991 Miththapala S, Seidensticker J, Phillips LG, Goodrowe KL, Fernando SBU, Forman L, O'Brien SJ. Genetic variation in Sri Lankan leopards Zoo Biology. 10: 139-146. DOI: 10.1002/Zoo.1430100206  0.339
1990 Gilbert DA, Lehman N, O'Brien SJ, Wayne RK. Genetic fingerprinting reflects population differentiation in the California Channel Island fox Nature. 344: 764-766. PMID 1970419 DOI: 10.1038/344764A0  0.338
1990 Baker CS, Palumbi SR, Lambertsen RH, Weinrich MT, Calambokidis J, O'Brien SJ. Influence of seasonal migration on geographic distribution of mitochondrial DNA haplotypes in humpback whales. Nature. 344: 238-40. PMID 1969116 DOI: 10.1038/344238A0  0.608
1990 Wayne RK, Meyer A, Lehman N, Van Valkenburgh B, Kat PW, Fuller TK, Girman D, O'Brien SJ. Large sequence divergence among mitochondrial DNA genotypes within populations of eastern African black-backed jackals. Proceedings of the National Academy of Sciences of the United States of America. 87: 1772-6. PMID 1968637 DOI: 10.1073/Pnas.87.5.1772  0.353
1990 Yuhki N, O'Brien SJ. DNA variation of the mammalian major histocompatibility complex reflects genomic diversity and population history Proceedings of the National Academy of Sciences of the United States of America. 87: 836-840. PMID 1967831 DOI: 10.1073/Pnas.87.2.836  0.382
1990 Yuhki N, O'Brien SJ. DNA recombination and natural selection pressure sustain genetic sequence diversity of the feline MHC class I genes Journal of Experimental Medicine. 172: 621-630. PMID 1695669 DOI: 10.1084/Jem.172.2.621  0.348
1990 Janczewski DN, Goldman D, O'Brien SJ. Molecular Genetic Divergence of Orang Utan (Pongo pygmaeus) Subspecies Based on Isozyme and Two-Dimensional Gel Electrophoresis Journal of Heredity. 81: 375-387. DOI: 10.1093/Oxfordjournals.Jhered.A111005  0.37
1989 Goldman D, Giri PR, O'Brien SJ. Molecular Genetic-Distance Estimates Among The Ursidae As Indicated By One- And Two-Dimensional Protein Electrophoresis. Evolution. 43: 282-295. PMID 28568545 DOI: 10.1111/J.1558-5646.1989.Tb04228.X  0.338
1989 Anagnou NP, Economou-Pachnis A, O'Brien SJ, Modi WS, Nienhuis AW, Tsichlis PN. The human homolog of the moloney leukemia virus integration 2 locus (MLVI2) maps to band p14 of chromosome 5 Genomics. 5: 354-358. PMID 2793187 DOI: 10.1016/0888-7543(89)90069-4  0.3
1989 Giri PR, Krug JF, Kozak C, Moretti T, O'Brien SJ, Seuanez HN, Goldman D. Cloning and comparative mapping of a human class III (chi) alcohol dehydrogenase cDNA. Biochemical and Biophysical Research Communications. 164: 453-60. PMID 2679557 DOI: 10.1016/0006-291X(89)91741-5  0.315
1989 Reeves RH, Gearhart JD, Hecht NB, Yelick P, Johnson P, O'brien SJ. Mapping of PRM 1 to human chromosome 16 and tight linkage of Prm-1 and Prm-2 on mouse chromosome 16 Journal of Heredity. 80: 442-446. PMID 2614060 DOI: 10.1093/Oxfordjournals.Jhered.A110895  0.679
1989 Dean M, Stewart C, Perry A, Gerrard B, Beck T, Rapp U, Drumm M, Iannuzzi M, Collins F, O'Brien S. Genetic markers for oncogenes, growth factors, and cystic fibrosis Hamatologie Und Bluttransfusion. 32: 360-365. PMID 2576235 DOI: 10.1007/978-3-642-74621-5_63  0.365
1989 Sack GH, Talbot CC, Seuanez H, O'Brien SJ. Molecular analysis of the human serum amyloid A (SAA) gene family Scandinavian Journal of Immunology. 29: 113-119. PMID 2564214 DOI: 10.1111/J.1365-3083.1989.Tb01105.X  0.344
1989 Wayne RK, Van Valkenburgh B, Kat PW, Fuller TK, Johnson WE, O'Brien SJ. Genetic and morphological divergence among sympatric canids. The Journal of Heredity. 80: 447-54. PMID 2559120 DOI: 10.1093/Oxfordjournals.Jhered.A110896  0.351
1989 Winkler C, Schultz A, Cevario S, O'Brien S. Genetic characterization of FLA, the cat major histocompatibility complex Proceedings of the National Academy of Sciences of the United States of America. 86: 943-947. PMID 2492667 DOI: 10.1073/Pnas.86.3.943  0.306
1989 O'brien SJ, Graves JAM. Geneticists converge on divergent mammals: An overview of comparative mammalian genetics Australian Journal of Zoology. 37: 147-154. DOI: 10.1071/Zo9890147  0.33
1988 Fanning TG, Modi WS, Wayne RK, O'Brien SJ. Evolution of heterochromatin-associated satellite DNA loci in felids and canids (Carnivora). Cytogenetic and Genome Research. 48: 214-219. PMID 3248377 DOI: 10.1159/000132631  0.333
1988 Graninger WB, Goldman PL, Morton CC, O'Brien SJ, Korsmeyer SJ. The kappa-deleting element. Germline and rearranged, duplicated and dispersed forms. The Journal of Experimental Medicine. 167: 488-501. PMID 3126251 DOI: 10.1084/Jem.167.2.488  0.314
1988 Yuhki N, O'Brien SJ. Molecular characterization and genetic mapping of class I and class II MHC genes of the domestic cat Immunogenetics. 27: 414-425. PMID 2897330 DOI: 10.1007/Bf00364427  0.344
1988 Ruppert JM, Kinzler KW, Wong AJ, Bigner SH, Kao FT, Law ML, Seuanez HN, O'Brien SJ, Vogelstein B. The GLI-Kruppel family of human genes. Molecular and Cellular Biology. 8: 3104-13. PMID 2850480 DOI: 10.1128/Mcb.8.8.3104  0.319
1988 Evermann JF, Heeney JL, Roelke ME, McKeirnan AJ, O'Brien SJ. Biological and Pathological Consequences of Feline Infectious Peritonitis Virus Infection in the Cheetah Archives of Virology. 102: 155-171. PMID 2849387 DOI: 10.1007/Bf01310822  0.311
1988 O'Brien SJ, Evermann JF. Interactive influence of infectious disease and genetic diversity in natural populations Trends in Ecology and Evolution. 3: 254-259. DOI: 10.1016/0169-5347(88)90058-4  0.349
1987 Dean M, Kozak C, Robbins J, Callahan R, O'Brien SJ, Woude GFV. Chromosomal localization of the met proto-oncogene in the mouse and cat genome. Genomics. 1: 167-173. PMID 3692486 DOI: 10.1016/0888-7543(87)90009-7  0.326
1987 Wayne RK, Nash WG, O'Brien SJ. Chromosomal evolution of the Canidae. I. Species with high diploid numbers. Cytogenetic and Genome Research. 44: 123-133. PMID 3568761 DOI: 10.1159/000132356  0.317
1987 Kinzler KW, Bigner SH, Bigner DD, Trent JM, Law ML, O'Brien SJ, Wong AJ, Vogelstein B. Identification of an amplified, highly expressed gene in a human glioma. Science (New York, N.Y.). 236: 70-3. PMID 3563490 DOI: 10.1126/Science.3563490  0.306
1987 Epstein ND, Karlsson S, O'Brien SJ, Modi WS, Moulton A, Nienhuis AW. A New Moderately Repetitive DNA Sequence Family of Novel Organization Nucleic Acids Research. 15: 2327-2341. PMID 3562229 DOI: 10.1093/Nar/15.5.2327  0.318
1987 O'Brien SJ, Wildt DE, Bush M, Caro TM, FitzGibbon C, Aggundey I, Leakey RE. East African cheetahs: evidence for two population bottlenecks? Proceedings of the National Academy of Sciences of the United States of America. 84: 508-11. PMID 3467370 DOI: 10.1073/Pnas.84.2.508  0.366
1987 Goldman D, Giri PR, O'Brien SJ. A molecular phylogeny of the hominoid primates as indicated by two-dimensional protein electrophoresis Proceedings of the National Academy of Sciences of the United States of America. 84: 3307-3311. PMID 3106965 DOI: 10.1073/Pnas.84.10.3307  0.349
1987 Wayne RK, O'Brien SJ. Allozyme Divergence Within the Canidae Systematic Zoology. 36: 339. DOI: 10.2307/2413399  0.35
1987 Wildt DE, Bush M, Goodrowe KL, Packer C, Pusey AE, Brown JL, Joslin P, O'Brien SJ. Reproductive and genetic consequences of founding isolated lion populations Nature. 329: 328-331. DOI: 10.1038/329328A0  0.339
1987 O'Brien SJ, Joslin P, Smith GL, Wolfe R, Schaffer N, Heath E, Ott-Joslin J, Rawal PP, Bhattacharjee KK, Martenson JS. Evidence for African origins of founders of the asiatic lion species survival plan Zoo Biology. 6: 99-116. DOI: 10.1002/Zoo.1430060202  0.341
1986 Wayne RK, Modi WS, O'Brien SJ. MORPHOLOGICAL VARIABILITY AND ASYMMETRY IN THE CHEETAH (ACINONYX JUBATUS), A GENETICALLY UNIFORM SPECIES. Evolution; International Journal of Organic Evolution. 40: 78-85. PMID 28564107 DOI: 10.1111/J.1558-5646.1986.Tb05719.X  0.337
1986 O'Brien SJ, Haskins ME, Winkler CA, Nash WG, Patterson DF. Chromosomal mapping of beta-globin and albino loci in the domestic cat. A conserved mammalian chromosome group. The Journal of Heredity. 77: 374-8. PMID 3559163 DOI: 10.1093/Oxfordjournals.Jhered.A110264  0.315
1986 Forman L, Kleiman DG, Bush RM, Dietz JM, Ballou JD, Phillips LG, Coimbra-Filho AF, O'Brien SJ. Genetic variation within and among lion tamarins. American Journal of Physical Anthropology. 71: 1-11. PMID 3096142 DOI: 10.1002/Ajpa.1330710102  0.353
1986 Hentze MW, Keim S, Papadopoulos P, O'Brien S, Modi W, Drysdale J, Leonard WJ, Harford JB, Klausner RD. Cloning, characterization, expression, and chromosomal localization of a human ferritin heavy-chain gene. Proceedings of the National Academy of Sciences of the United States of America. 83: 7226-30. PMID 3020541 DOI: 10.1073/Pnas.83.19.7226  0.307
1986 Steele PE, Martin MA, Rabson AB, Bryan T, O'Brien SJ. Amplification and chromosomal dispersion of human endogenous retroviral sequences Journal of Virology. 59: 545-550. PMID 3016318 DOI: 10.1128/Jvi.59.3.545-550.1986  0.345
1986 Berman EJ, Nash WG, Seuánez HN, O'Brien SJ. Chromosomal mapping of enzyme loci in the domestic cat: GSR to C2, ADA and ITPA to A3, and LDHA-ACP2 to D1. Cytogenetics and Cell Genetics. 41: 114-20. PMID 3007037 DOI: 10.1159/000132213  0.303
1986 Seigel LJ, Ratner L, Josephs SF, Derse D, Feinberg MB, Reyes GR, O'Brien SJ, Wong-Staal F. Transactivation induced by human T-lymphotropic virus type III (HTLV III) maps to a viral sequence encoding 58 amino acids and lacks tissue specificity. Virology. 148: 226-31. PMID 3002031 DOI: 10.1016/0042-6822(86)90419-8  0.336
1986 Park M, Dean M, Cooper CS, Schmidt M, O'Brien SJ, Blair DG, Vande Woude GF. Mechanism of met oncogene activation. Cell. 45: 895-904. PMID 2423252 DOI: 10.1016/0092-8674(86)90564-7  0.301
1986 O'Brien SJ. Molecular genetics in the domestic cat and its relatives Trends in Genetics. 2: 137-142. DOI: 10.1016/0168-9525(86)90204-0  0.341
1986 Wayne RK, Forman L, Newman AK, Simonson JM, O'Brien SJ. Genetic monitors of zoo populations: Morphological and electrophoretic assays Zoo Biology. 5: 215-232. DOI: 10.1002/Zoo.1430050215  0.348
1985 Collier GE, O'Brien SJ. A MOLECULAR PHYLOGENY OF THE FELIDAE: IMMUNOLOGICAL DISTANCE. Evolution; International Journal of Organic Evolution. 39: 473-487. PMID 28561961 DOI: 10.1111/J.1558-5646.1985.Tb00389.X  0.313
1985 O'Brien SJ, Nash WG, Wildt DE, Bush ME, Benveniste RE. A molecular solution to the riddle of the giant panda's phylogeny. Nature. 317: 140-4. PMID 4033795 DOI: 10.1038/317140A0  0.321
1985 Reeves RH, Nash WG, O'Brien SJ. Genetic mapping of endogenous RD-114 retroviral sequences of domestic cats Journal of Virology. 56: 303-306. PMID 4032538 DOI: 10.1128/Jvi.56.1.303-306.1985  0.584
1985 Brownell E, O'Brien SJ, Nash WG, Rice N. Genetic characterization of human c-rel sequences. Molecular and Cellular Biology. 5: 2826-31. PMID 3016517 DOI: 10.1128/Mcb.5.10.2826  0.34
1985 Watson DK, McWilliams-Smith MJ, Nunn MF, Duesberg PH, O'Brien SJ, Papas TS. The ets sequence from the transforming gene of avian erythroblastosis virus, E26, has unique domains on human chromosomes 11 and 21: both loci are transcriptionally active. Proceedings of the National Academy of Sciences of the United States of America. 82: 7294-8. PMID 2997781 DOI: 10.1073/Pnas.82.21.7294  0.303
1985 Burk RD, Szabo P, O'Brien S, Nash WG, Yu L, Smith KD. Organization and chromosomal specificity of autosomal homologs of human Y chromosome repeated DNA Chromosoma. 92: 225-233. PMID 2990828 DOI: 10.1007/Bf00348698  0.301
1985 O'Brien SJ, Roelke ME, Marker L, Newman A, Winkler CA, Meltzer D, Colly L, Evermann JF, Bush M, Wildt DE. Genetic basis for species vulnerability in the cheetah. Science (New York, N.Y.). 227: 1428-34. PMID 2983425 DOI: 10.1126/Science.2983425  0.365
1985 Newman A, Bush M, Wildt DE, Dam DV, Frankenhuis MT, Simmons L, Phillips L, O'Brien SJ. Biochemical Genetic Variation in Eight Endangered or Threatened Felid Species Journal of Mammalogy. 66: 256-267. DOI: 10.2307/1381238  0.367
1984 Bonner T, O'Brien SJ, Nash WG, Rapp UR, Morton CC, Leder P. The human homologs of the raf (mil) oncogene are located on human chromosomes 3 and 4. Science (New York, N.Y.). 223: 71-4. PMID 6691137 DOI: 10.1126/Science.6691137  0.307
1984 O'Connell C, O'Brien S, Nash WG, Cohen M. ERV3, a full-length human endogenous provirus: chromosomal localization and evolutionary relationships. Virology. 138: 225-235. PMID 6495650 DOI: 10.1016/0042-6822(84)90347-7  0.336
1984 Seigel LJ, Harper ME, Wong-Staal F, Gallo RC, Nash WG, O'Brien SJ. Gene for T-cell growth factor: location on human chromosome 4q and feline chromosome B1 Science. 223: 175-178. PMID 6318318 DOI: 10.1126/Science.6318318  0.305
1984 Reeves RH, O'Brien SJ. Molecular genetic characterization of the RD-114 gene family of endogenous feline retroviral sequences Journal of Virology. 52: 164-171. PMID 6090693 DOI: 10.1128/Jvi.52.1.164-171.1984  0.592
1984 Anagnou NP, O'Brien SJ, Shimada T, Nash WG, Chen M, Nienhuis AW. Chromosomal organization of the human dihydrofolate reductase genes: dispersion, selective amplification, and a novel form of polymorphism Proceedings of the National Academy of Sciences of the United States of America. 81: 5170-5174. PMID 6089182 DOI: 10.1073/Pnas.81.16.5170  0.346
1983 O'brien SJ, Wildt DE, Goldman D, Merril CR, Bush M. The cheetah is depauperate in genetic variation. Science. 221: 459-462. PMID 17755482 DOI: 10.1126/Science.221.4609.459  0.36
1983 O'Brien SJ, Bonner TI, Cohen M, O'Connell C, Nash WG. Mapping of an endogenous retroviral sequence to human chromosome 18. Nature. 303: 74-7. PMID 6843662 DOI: 10.1038/303074A0  0.33
1983 Wildt DE, Bush M, Howard JG, O'Brien SJ, Meltzer D, Van Dyk A, Ebedes H, Brand DJ. Unique seminal quality in the South African cheetah and a comparative evaluation in the domestic cat. Biology of Reproduction. 29: 1019-25. PMID 6640033 DOI: 10.1095/Biolreprod29.4.1019  0.348
1983 O'Brien SJ, Reeves RH, Simonson JM, Eichelberger MA, Nash WG. Parallels of genomic organization and of endogenous retrovirus organization in cat and man Developmental Genetics. 4: 341-354. DOI: 10.1002/Dvg.1020040410  0.608
1982 O'Brien SJ, Nash WG. Genetic mapping in mammals: Chromosome map of domestic cat Science. 216: 257-265. PMID 7063884 DOI: 10.1126/Science.7063884  0.365
1982 Nash WG, O'Brien SJ. Conserved regions of homologous G-banded chromosomes between orders in mammalian evolution: Carnivores and primates Proceedings of the National Academy of Sciences of the United States of America. 79: 6631-6635. PMID 6959143 DOI: 10.1073/Pnas.79.21.6631  0.315
1982 O'Brien SJ, Moore JL, Martin MA, Womack JE. Evidence for the horizontal acquisition of murine AKR virogenes by recent horizontal infection of the germ line. The Journal of Experimental Medicine. 155: 1120-23. PMID 6278048 DOI: 10.1084/Jem.155.4.1120  0.309
1980 O'Brien SJ, Gail MH, Levin DL. Correlative genetic variation in natural populations of cats, mice and men. Nature. 288: 580-3. PMID 7442800 DOI: 10.1038/288580A0  0.386
1980 Rice MC, O'Brien SJ. Genetic variance of laboratory outbred Swiss mice Nature. 283: 157-161. PMID 7350540 DOI: 10.1038/283157A0  0.334
1980 O'Brien SJ, Shannon JE, Gail MH. A molecular approach to the identification and individualization of human and animal cells in culture: isozyme and allozyme genetic signatures. In Vitro. 16: 119-35. PMID 6988327 DOI: 10.1007/Bf02831503  0.338
1980 Rice MC, Gardner MB, O'Brien SJ. Genetic diversity in leukemia-prone feral house mice infected with murine leukemia virus. Biochemical Genetics. 18: 915-28. PMID 6261732 DOI: 10.1007/Bf00500124  0.335
1980 O'BRIEN SJ. The extent and character of biochemical genetic variation in the domestic cat Journal of Heredity. 71: 3-8. DOI: 10.1093/Oxfordjournals.Jhered.A109306  0.318
1979 Surti U, Szulman AE, O'Brien SJ. Complete (Classic) Hydatidiform Mole with 46,XY Karyotype of Paternal Origin Human Genetics. 51: 153-155. PMID 511141 DOI: 10.1007/Bf00287169  0.315
1978 Lemons RS, Nash WG, O'Brien SJ, Benveniste RE, Sherr CJ. A gene (Bevi) on human chromosome 6 is an integration site for baboon type C DNA provirus in human cells. Cell. 14: 995-1005. PMID 80284 DOI: 10.1016/0092-8674(78)90353-7  0.339
1977 O'Brien SJ, Kleiner G, Olson R, Shannon JE. Enzyme polymorphisms as genetic signatures in human cell cultures Science. 195: 1345-1348. PMID 841332 DOI: 10.1126/Science.841332  0.317
1977 Lemons RS, O'Brien SJ, Sherr CJ. A new genetic locus, bevi, on human chromosome 6 which controls the replication of baboon type C virus in human cells Cell. 12: 251-262. PMID 198140 DOI: 10.1016/0092-8674(77)90203-3  0.318
1976 O'Brien SJ. Bvr 1, a restriction locus of a type C RNA virus in the feline cellular genome: identification, location, and phenotypic characterization in cat x mouse somatic cell hybrids Proceedings of the National Academy of Sciences of the United States of America. 73: 4618-4622. PMID 63949 DOI: 10.1073/Pnas.73.12.4618  0.326
1973 O'Brien SJ. Comparative analysis of malate dehydrogenases of Drosophila melanogaster Biochemical Genetics. 10: 191-205. PMID 4201525 DOI: 10.1007/Bf00485765  0.308
1972 O'Brien SJ, Wallace B, MacIntyre RJ. The α-Glycerophosphate Cycle in Drosophila melanogaster. III. Relative Viability of "Null" Mutants at the α-Glycerophosphate Dehydrogenase-1 Locus The American Naturalist. 106: 767-771. DOI: 10.1086/282811  0.472
1971 O'Brien SJ, MacIntyre RJ. Transient linkage disequilibrium in Drosophila. Nature. 230: 335-6. PMID 5549412 DOI: 10.1038/230335A0  0.325
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