| Year |
Citation |
Score |
| 2023 |
Li Y, Acharya A, Yang L, Liu J, Tajkhorshid E, Zgurskaya HI, Jackson M, Gumbart JC. Insights into substrate transport and water permeation in the mycobacterial transporter MmpL3. Biophysical Journal. PMID 36926696 DOI: 10.1016/j.bpj.2023.03.018 |
0.495 |
|
| 2022 |
Pang YT, Acharya A, Lynch DL, Pavlova A, Gumbart JC. SARS-CoV-2 spike opening dynamics and energetics reveal the individual roles of glycans and their collective impact. Communications Biology. 5: 1170. PMID 36329138 DOI: 10.1038/s42003-022-04138-6 |
0.516 |
|
| 2022 |
Stevens CM, Babii SO, Pandya AN, Li W, Li Y, Mehla J, Scott R, Hegde P, Prathipati PK, Acharya A, Liu J, Gumbart JC, North J, Jackson M, Zgurskaya HI. Proton transfer activity of the reconstituted MmpL3 is modulated by substrate mimics and inhibitors. Proceedings of the National Academy of Sciences of the United States of America. 119: e2113963119. PMID 35858440 DOI: 10.1073/pnas.2113963119 |
0.5 |
|
| 2022 |
Yu B, Roy Choudhury M, Yang X, Benoit SL, Womack E, Van Mouwerik Lyles K, Acharya A, Kumar A, Yang C, Pavlova A, Zhu M, Yuan Z, Gumbart JC, Boykin DW, Maier RJ, et al. Restoring and Enhancing the Potency of Existing Antibiotics against Drug-Resistant Gram-Negative Bacteria through the Development of Potent Small-Molecule Adjuvants. Acs Infectious Diseases. PMID 35801980 DOI: 10.1021/acsinfecdis.2c00121 |
0.46 |
|
| 2022 |
Dahl PJ, Yi SM, Gu Y, Acharya A, Shipps C, Neu J, O'Brien JP, Morzan UN, Chaudhuri S, Guberman-Pfeffer MJ, Vu D, Yalcin SE, Batista VS, Malvankar NS. A 300-fold conductivity increase in microbial cytochrome nanowires due to temperature-induced restructuring of hydrogen bonding networks. Science Advances. 8: eabm7193. PMID 35544567 DOI: 10.1126/sciadv.abm7193 |
0.743 |
|
| 2022 |
Acharya A, Yi D, Pavlova A, Agarwal V, Gumbart JC. Resolving the Hydride Transfer Pathway in Oxidative Conversion of Proline to Pyrrole. Biochemistry. PMID 35072459 DOI: 10.1021/acs.biochem.1c00741 |
0.538 |
|
| 2021 |
Zhan Z, Ryoo D, Balusek C, Acharya A, Rydmark MO, Linke D, Gumbart JC. Inward-facing glycine residues create sharp turns in β-barrel membrane proteins. Biochimica Et Biophysica Acta. Biomembranes. 183662. PMID 34097860 DOI: 10.1016/j.bbamem.2021.183662 |
0.481 |
|
| 2021 |
Pavlova A, Zhang Z, Acharya A, Lynch DL, Pang YT, Mou Z, Parks JM, Chipot C, Gumbart JC. Machine Learning Reveals the Critical Interactions for SARS-CoV-2 Spike Protein Binding to ACE2. The Journal of Physical Chemistry Letters. 5494-5502. PMID 34086459 DOI: 10.1021/acs.jpclett.1c01494 |
0.505 |
|
| 2021 |
Acharya A, Lynch DL, Pavlova A, Pang YT, Gumbart JC. ACE2 glycans preferentially interact with SARS-CoV-2 over SARS-CoV. Chemical Communications (Cambridge, England). PMID 34019602 DOI: 10.1039/d1cc02305e |
0.472 |
|
| 2021 |
Yi D, Acharya A, Gumbart JC, Gutekunst WR, Agarwal V. Gatekeeping Ketosynthases Dictate Initiation of Assembly Line Biosynthesis of Pyrrolic Polyketides. Journal of the American Chemical Society. PMID 33989500 DOI: 10.1021/jacs.1c02371 |
0.48 |
|
| 2020 |
Pavlova A, Lynch DL, Daidone I, Zanetti-Polzi L, Smith MD, Chipot C, Kneller DW, Kovalevsky A, Coates L, Golosov AA, Dickson CJ, Velez-Vega C, Duca JS, Vermaas JV, Pang YT, ... Acharya A, et al. Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease. Chemical Science. 12: 1513-1527. PMID 35356437 DOI: 10.1039/d0sc04942e |
0.512 |
|
| 2020 |
Acharya A, Agarwal R, Baker M, Baudry J, Bhowmik D, Boehm S, Byler K, Coates L, Chen SY, Cooper CJ, Demerdash O, Daidone I, Eblen J, Ellingson SR, Forli S, et al. Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19. Chemrxiv : the Preprint Server For Chemistry. PMID 33200117 DOI: 10.26434/chemrxiv.12725465.v1 |
0.49 |
|
| 2020 |
Pavlova A, Lynch DL, Daidone I, Zanetti-Polzi L, Smith MD, Chipot C, Kneller DW, Kovalevsky A, Coates L, Golosov AA, Dickson CJ, Velez-Vega C, Duca JS, Vermaas JV, Pang YT, ... Acharya A, et al. Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease. Biorxiv : the Preprint Server For Biology. PMID 32935106 DOI: 10.1101/2020.09.07.286344 |
0.512 |
|
| 2020 |
Yalcin SE, O'Brien JP, Gu Y, Reiss K, Yi SM, Jain R, Srikanth V, Dahl PJ, Huynh W, Vu D, Acharya A, Chaudhuri S, Varga T, Batista VS, Malvankar NS. Electric field stimulates production of highly conductive microbial OmcZ nanowires. Nature Chemical Biology. PMID 32807967 DOI: 10.1038/S41589-020-0623-9 |
0.704 |
|
| 2020 |
Acharya A, Stockmann J, Beyer L, Rudack T, Nabers A, Gumbart JC, Gerwert K, Batista VS. The Effect of (-)-Epigallocatechin-3-Gallate on the Amyloid-β Secondary Structure. Biophysical Journal. PMID 32579965 DOI: 10.1016/J.Bpj.2020.05.033 |
0.63 |
|
| 2020 |
Acharya A, Stockmann J, Beyer L, Nabers A, Gerwert K, Gumbart JC, Batista VS. The Effect of (-)-Epigallocatechin-3-Gallate on the Aβ Secondary Structure Biophysical Journal. 118: 47a. DOI: 10.1016/J.Bpj.2019.11.437 |
0.596 |
|
| 2019 |
East KW, Newton JC, Morzan UN, Narkhede Y, Acharya A, Skeens E, Jogl G, Batista VS, Palermo G, Lisi GP. Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics. Journal of the American Chemical Society. PMID 31885264 DOI: 10.2210/Pdb6O56/Pdb |
0.707 |
|
| 2019 |
Sen T, Mamontova AV, Titelmayer AV, Shakhov AM, Astafiev AA, Acharya A, Lukyanov KA, Krylov AI, Bogdanov AM. Influence of the First Chromophore-Forming Residue on Photobleaching and Oxidative Photoconversion of EGFP and EYFP. International Journal of Molecular Sciences. 20. PMID 31652505 DOI: 10.3390/Ijms20205229 |
0.545 |
|
| 2019 |
Chaudhuri S, Acharya A, Nibbering ETJ, Batista VS. Regioselective Ultrafast Photoinduced Electron Transfer from Naphthols to Halocarbon Solvents. The Journal of Physical Chemistry Letters. PMID 31051077 DOI: 10.1021/Acs.Jpclett.9B00410 |
0.643 |
|
| 2018 |
Christensen JA, Phelan BT, Chaudhuri S, Acharya A, Batista VS, Wasielewski MR. Phenothiazine Radical Cation Excited States as Super-oxidants for Energy Demanding Reactions. Journal of the American Chemical Society. PMID 29589754 DOI: 10.1021/Jacs.8B01778 |
0.602 |
|
| 2018 |
Acharya A, Chaudhuri S, Batista VS. Can TDDFT Describe Excited Electronic States of Naphthol Photoacids? A Closer Look with EOM-CCSD. Journal of Chemical Theory and Computation. PMID 29298059 DOI: 10.1021/Acs.Jctc.7B01101 |
0.621 |
|
| 2017 |
Rudshteyn B, Acharya A, Batista VS. Is the Supporting Information the Venue for Reproducibility and Transparency? The Journal of Physical Chemistry. B. 121: 11425-11426. PMID 29281888 DOI: 10.1021/Acs.Jpcb.7B11664 |
0.676 |
|
| 2017 |
Rudshteyn B, Acharya A, Batista VS. Is the Supporting Information the Venue for Reproducibility and Transparency? The Journal of Physical Chemistry. A. 121: 9680-9681. PMID 29281886 DOI: 10.1021/acs.jpca.7b11663 |
0.663 |
|
| 2016 |
Acharya A, Bogdanov AM, Grigorenko BL, Bravaya KB, Nemukhin AV, Lukyanov KA, Krylov AI. Photoinduced Chemistry in Fluorescent Proteins: Curse or Blessing? Chemical Reviews. PMID 27754659 DOI: 10.1021/Acs.Chemrev.6B00238 |
0.73 |
|
| 2016 |
Gurunathan PK, Acharya A, Ghosh D, Kosenkov D, Kaliman I, Shao Y, Krylov AI, Slipchenko LV. The Extension of the Effective Fragment Potential Method to Macromolecules. The Journal of Physical Chemistry. B. PMID 27314461 DOI: 10.1021/Acs.Jpcb.6B04166 |
0.706 |
|
| 2016 |
Bogdanov AM, Acharya A, Titelmayer AV, Mamontova AV, Bravaya KB, Kolomeisky AB, Lukyanov KA, Krylov AI. Turning on and off photoinduced electron transfer in fluorescent proteins by π-stacking, halide binding, and Tyr145 mutations. Journal of the American Chemical Society. PMID 26999576 DOI: 10.1021/Jacs.6B00092 |
0.72 |
|
| 2012 |
Ghosh D, Acharya A, Tiwari SC, Krylov AI. Toward understanding the redox properties of model chromophores from the green fluorescent protein family: an interplay between conjugation, resonance stabilization, and solvent effects. The Journal of Physical Chemistry. B. 116: 12398-405. PMID 22978512 DOI: 10.1021/Jp305022T |
0.612 |
|
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