| Year |
Citation |
Score |
| 2022 |
Manavella PA, Herz MAG, Kornblihtt AR, Sorenson R, Sieburth LE, Nakaminami K, Seki M, Ding Y, Sun Q, Kang H, Ariel FD, Crespi M, Giudicatti A, Cai Q, Jin H, ... ... Qi Y, et al. Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. PMID 36477566 DOI: 10.1093/plcell/koac346 |
0.459 |
|
| 2021 |
Gu H, Lian B, Yuan Y, Kong C, Li Y, Liu C, Qi Y. A 5' tRNA-Ala-derived small RNA regulates anti-fungal defense in plants. Science China. Life Sciences. PMID 34705222 DOI: 10.1007/s11427-021-2017-1 |
0.431 |
|
| 2021 |
Li L, Luo H, Lim DH, Han L, Li Y, Fu XD, Qi Y. Global profiling of RNA-chromatin interactions reveals co-regulatory gene expression networks in Arabidopsis. Nature Plants. 7: 1364-1378. PMID 34650265 DOI: 10.1038/s41477-021-01004-x |
0.448 |
|
| 2021 |
Wang Y, Gong Q, Wu Y, Huang F, Ismayil A, Zhang D, Li H, Gu H, Ludman M, Fátyol K, Qi Y, Yoshioka K, Hanley-Bowdoin L, Hong Y, Liu Y. A calmodulin-binding transcription factor links calcium signaling to antiviral RNAi defense in plants. Cell Host & Microbe. PMID 34352216 DOI: 10.1016/j.chom.2021.07.003 |
0.387 |
|
| 2020 |
Xie D, Chen M, Niu J, Wang L, Li Y, Fang X, Li P, Qi Y. Phase separation of SERRATE drives dicing body assembly and promotes miRNA processing in Arabidopsis. Nature Cell Biology. PMID 33288888 DOI: 10.1038/s41556-020-00606-5 |
0.574 |
|
| 2020 |
Yang Z, Huang Y, Yang J, Yao S, Zhao K, Wang D, Qin Q, Bian Z, Li Y, Lan Y, Zhou T, Wang H, Liu C, Wang W, Qi Y, et al. Jasmonate Signaling Enhances RNA Silencing and Antiviral Defense in Rice. Cell Host & Microbe. PMID 32504578 DOI: 10.1016/j.chom.2020.05.001 |
0.468 |
|
| 2020 |
Xu L, Yuan K, Yuan M, Meng X, Chen M, Wu J, Li J, Qi Y. Regulation of Rice Tillering by RNA-directed DNA Methylation at Miniature Inverted-repeat Transposable Elements. Molecular Plant. PMID 32087371 DOI: 10.1016/j.molp.2020.02.009 |
0.312 |
|
| 2019 |
Wang Y, Wu Y, Gong Q, Ismayil A, Yuan Y, Lian B, Jia Q, Han M, Deng H, Hong Y, Hanley-Bowdoin L, Qi Y, Liu Y. Geminiviral V2 Protein Suppresses Transcriptional Gene Silencing through Interaction with AGO4. Journal of Virology. PMID 30626668 DOI: 10.1128/Jvi.01675-18 |
0.359 |
|
| 2018 |
Fang X, Zhao G, Zhang S, Li Y, Gu H, Li Y, Zhao Q, Qi Y. Chloroplast-to-Nucleus Signaling Regulates MicroRNA Biogenesis in Arabidopsis. Developmental Cell. PMID 30595534 DOI: 10.1016/j.devcel.2018.11.046 |
0.596 |
|
| 2018 |
Zhao X, Li J, Lian B, Gu H, Li Y, Qi Y. Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA. Nature Communications. 9: 5056. PMID 30498193 DOI: 10.1038/s41467-018-07500-7 |
0.349 |
|
| 2018 |
Wang JW, Qi Y. Plant non-coding RNAs and epigenetics. Science China. Life Sciences. PMID 29372511 DOI: 10.1007/s11427-017-9244-0 |
0.343 |
|
| 2018 |
Li Y, Yuan Y, Fang X, Lu X, Lian B, Zhao G, Qi Y. A Role for MINIYO and QUATRE-QUART 2 in the Assembly of RNA Polymerases II, IV and V in Arabidopsis. The Plant Cell. PMID 29352065 DOI: 10.1105/tpc.17.00380 |
0.681 |
|
| 2017 |
Liu C, Xin Y, Xu L, Cai Z, Xue Y, Liu Y, Xie D, Liu Y, Qi Y. Arabidopsis ARGONAUTE 1 Binds Chromatin to Promote Gene Transcription in Response to Hormones and Stresses. Developmental Cell. PMID 29290588 DOI: 10.1016/j.devcel.2017.12.002 |
0.309 |
|
| 2017 |
Yuan J, Li J, Yang Y, Tan C, Zhu Y, Hu L, Qi Y, Lu ZJ. Stress-responsive regulation of long noncoding RNAs' polyadenylation in Oryza sativa. The Plant Journal : For Cell and Molecular Biology. PMID 29265542 DOI: 10.1111/Tpj.13804 |
0.395 |
|
| 2017 |
Miki D, Zhu P, Zhang W, Mao Y, Feng Z, Huang H, Zhang H, Li Y, Liu R, Zhang H, Qi Y, Zhu JK. Efficient Generation of diRNAs Requires Components in the Posttranscriptional Gene Silencing Pathway. Scientific Reports. 7: 301. PMID 28331197 DOI: 10.1038/S41598-017-00374-7 |
0.399 |
|
| 2017 |
Liu M, Ba Z, Costa-Nunes P, Wei W, Li L, Kong F, Li Y, Chai J, Pontes O, Qi Y. IDN2 Interacts with RPA and Facilitates DNA Double-Strand Break Repair by Homologous Recombination in Arabidopsis. The Plant Cell. PMID 28223440 DOI: 10.1105/Tpc.16.00769 |
0.772 |
|
| 2017 |
Wu J, Yang R, Yang Z, Yao S, Zhao S, Wang Y, Li P, Song X, Jin L, Zhou T, Lan Y, Xie L, Zhou X, Chu C, Qi Y, et al. ROS accumulation and antiviral defence control by microRNA528 in rice. Nature Plants. 3: 16203. PMID 28059073 DOI: 10.1038/nplants.2016.203 |
0.316 |
|
| 2016 |
Ni F, Wu L, Wang Q, Hong J, Qi Y, Zhou X. Turnip yellow mosaic virus P69 interacts with and suppresses GLK transcription factors to cause pale-green symptom in Arabidopsis. Molecular Plant. PMID 27964999 DOI: 10.1016/j.molp.2016.12.003 |
0.322 |
|
| 2016 |
Cui Y, Fang X, Qi Y. TRANSPORTIN1 Promotes the Association of MicroRNA with ARGONAUTE1 in Arabidopsis. The Plant Cell. PMID 27662897 DOI: 10.1105/tpc.16.00384 |
0.589 |
|
| 2016 |
Fang X, Qi Y. RNAi in Plants: An Argonaute-Centered View. The Plant Cell. 28: 272-85. PMID 26869699 DOI: 10.1105/tpc.15.00920 |
0.653 |
|
| 2015 |
Fang X, Cui Y, Li Y, Qi Y. Transcription and processing of primary microRNAs are coupled by Elongator complex in Arabidopsis. Nature Plants. 1: 15075. PMID 27250010 DOI: 10.1038/nplants.2015.75 |
0.63 |
|
| 2015 |
Ye R, Chen Z, Lian B, Rowley MJ, Xia N, Chai J, Li Y, He XJ, Wierzbicki AT, Qi Y. A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis. Molecular Cell. PMID 26711010 DOI: 10.1016/J.Molcel.2015.11.015 |
0.676 |
|
| 2015 |
Itaya A, Lucas WJ, Qi Y, Qu F, Wang Y, Zhong X, Liu CM. In memory of Professor Biao Ding (1960-2015). Journal of Integrative Plant Biology. 57: 730-1. PMID 26182880 DOI: 10.1111/Jipb.12381 |
0.746 |
|
| 2015 |
Yang F, Zhao R, Fang X, Huang H, Xuan Y, Ma Y, Chen H, Cai T, Qi Y, Xi R. The RNA surveillance complex Pelo-Hbs1 is required for transposon silencing in the Drosophila germline. Embo Reports. PMID 26124316 DOI: 10.15252/Embr.201540084 |
0.669 |
|
| 2015 |
Yang YG, Qi Y. RNA-directed repair of DNA double-strand breaks. Dna Repair. PMID 25960340 DOI: 10.1016/j.dnarep.2015.04.017 |
0.451 |
|
| 2015 |
Fang X, Shi Y, Lu X, Chen Z, Qi Y. CMA33/XCT Regulates Small RNA Production through Modulating the Transcription of Dicer-Like Genes in Arabidopsis. Molecular Plant. PMID 25770820 DOI: 10.1016/j.molp.2015.03.002 |
0.71 |
|
| 2015 |
Wu J, Yang Z, Wang Y, Zheng L, Ye R, Ji Y, Zhao S, Ji S, Liu R, Xu L, Zheng H, Zhou Y, Zhang X, Cao X, Xie L, ... ... Qi Y, et al. Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA. Elife. 4. PMID 25688565 DOI: 10.7554/eLife.05733 |
0.61 |
|
| 2014 |
Di C, Yuan J, Wu Y, Li J, Lin H, Hu L, Zhang T, Qi Y, Gerstein MB, Guo Y, Lu ZJ. Characterization of stress-responsive lncRNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural features. The Plant Journal : For Cell and Molecular Biology. 80: 848-61. PMID 25256571 DOI: 10.1111/Tpj.12679 |
0.307 |
|
| 2014 |
Gao M, Wei W, Li MM, Wu YS, Ba Z, Jin KX, Li MM, Liao YQ, Adhikari S, Chong Z, Zhang T, Guo CX, Tang TS, Zhu BT, Xu XZ, ... ... Qi Y, et al. Ago2 facilitates Rad51 recruitment and DNA double-strand break repair by homologous recombination. Cell Research. 24: 532-41. PMID 24662483 DOI: 10.1038/cr.2014.36 |
0.781 |
|
| 2013 |
Ba Z, Qi Y. Small RNAs: emerging key players in DNA double-strand break repair. Science China. Life Sciences. 56: 933-6. PMID 24026293 DOI: 10.1007/s11427-013-4552-7 |
0.793 |
|
| 2013 |
Copeland C, Xu S, Qi Y, Li X. MOS2 has redundant function with its homolog MOS2H and is required for proper splicing of SNC1. Plant Signaling & Behavior. 8. PMID 23803746 DOI: 10.4161/Psb.25372 |
0.34 |
|
| 2013 |
Zhong SH, Liu JZ, Jin H, Lin L, Li Q, Chen Y, Yuan YX, Wang ZY, Huang H, Qi YJ, Chen XY, Vaucheret H, Chory J, Li J, He ZH. Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 110: 9171-6. PMID 23686579 DOI: 10.1073/Pnas.1219655110 |
0.371 |
|
| 2013 |
Liu TT, Zhu D, Chen W, Deng W, He H, He G, Bai B, Qi Y, Chen R, Deng XW. A global identification and analysis of small nucleolar RNAs and possible intermediate-sized non-coding RNAs in Oryza sativa. Molecular Plant. 6: 830-46. PMID 22986792 DOI: 10.1093/mp/sss087 |
0.384 |
|
| 2012 |
Wu L, Mao L, Qi Y. Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation. Plant Physiology. 160: 990-9. PMID 22846193 DOI: 10.1104/pp.112.200279 |
0.62 |
|
| 2012 |
Ye R, Wang W, Iki T, Liu C, Wu Y, Ishikawa M, Zhou X, Qi Y. Cytoplasmic assembly and selective nuclear import of Arabidopsis Argonaute4/siRNA complexes. Molecular Cell. 46: 859-70. PMID 22608924 DOI: 10.1016/j.molcel.2012.04.013 |
0.661 |
|
| 2012 |
Wei W, Ba Z, Gao M, Wu Y, Ma Y, Amiard S, White CI, Danielsen JMR, Yang YG, Qi Y. A role for small RNAs in DNA double-strand break repair Cell. 149: 101-112. PMID 22445173 DOI: 10.1016/j.cell.2012.03.002 |
0.804 |
|
| 2012 |
Shen H, He H, Li J, Chen W, Wang X, Guo L, Peng Z, He G, Zhong S, Qi Y, Terzaghi W, Deng XW. Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. The Plant Cell. 24: 875-92. PMID 22438023 DOI: 10.1105/tpc.111.094870 |
0.318 |
|
| 2011 |
Wang W, Ye R, Xin Y, Fang X, Li C, Shi H, Zhou X, Qi Y. An importin β protein negatively regulates MicroRNA activity in Arabidopsis. The Plant Cell. 23: 3565-76. PMID 21984696 DOI: 10.1105/tpc.111.091058 |
0.697 |
|
| 2011 |
Wang Y, Itaya A, Zhong X, Wu Y, Zhang J, van der Knaap E, Olmstead R, Qi Y, Ding B. Function and evolution of a MicroRNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth. The Plant Cell. 23: 3185-203. PMID 21917547 DOI: 10.1105/Tpc.111.088013 |
0.749 |
|
| 2010 |
Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y. DNA methylation mediated by a microRNA pathway. Molecular Cell. 38: 465-75. PMID 20381393 DOI: 10.1016/j.molcel.2010.03.008 |
0.472 |
|
| 2010 |
Li Y, Zhang Q, Zhang J, Wu L, Qi Y, Zhou JM. Identification of microRNAs involved in pathogen-associated molecular pattern-triggered plant innate immunity. Plant Physiology. 152: 2222-31. PMID 20164210 DOI: 10.1104/Pp.109.151803 |
0.453 |
|
| 2010 |
Qi Y, Mi S. Purification of Arabidopsis argonaute complexes and associated small RNAs Methods in Molecular Biology (Clifton, N.J.). 592: 243-254. PMID 19802600 |
0.457 |
|
| 2009 |
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y. Rice MicroRNA effector complexes and targets. The Plant Cell. 21: 3421-35. PMID 19903869 DOI: 10.1105/tpc.109.070938 |
0.496 |
|
| 2009 |
Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L. Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Functional & Integrative Genomics. 9: 499-511. PMID 19499258 DOI: 10.1007/s10142-009-0128-9 |
0.365 |
|
| 2009 |
Wang X, Elling AA, Li X, Li N, Peng Z, He G, Sun H, Qi Y, Liu XS, Deng XW. Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. The Plant Cell. 21: 1053-69. PMID 19376930 DOI: 10.1105/tpc.109.065714 |
0.449 |
|
| 2008 |
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, ... Qi Y, et al. Criteria for annotation of plant MicroRNAs. The Plant Cell. 20: 3186-90. PMID 19074682 DOI: 10.1105/Tpc.108.064311 |
0.441 |
|
| 2008 |
Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell. 133: 116-27. PMID 18342361 DOI: 10.1016/J.Cell.2008.02.034 |
0.699 |
|
| 2007 |
Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y. A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes & Development. 21: 1190-203. PMID 17470535 DOI: 10.1101/Gad.1543507 |
0.6 |
|
| 2007 |
Itaya A, Zhong X, Bundschuh R, Qi Y, Wang Y, Takeda R, Harris AR, Molina C, Nelson RS, Ding B. A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation. Journal of Virology. 81: 2980-94. PMID 17202210 DOI: 10.1128/Jvi.02339-06 |
0.809 |
|
| 2006 |
Qi Y, He X, Wang XJ, Kohany O, Jurka J, Hannon GJ. Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature. 443: 1008-12. PMID 16998468 DOI: 10.1038/Nature05198 |
0.623 |
|
| 2006 |
Zhong X, Leontis N, Qian S, Itaya A, Qi Y, Boris-Lawrie K, Ding B. Tertiary structural and functional analyses of a viroid RNA motif by isostericity matrix and mutagenesis reveal its essential role in replication. Journal of Virology. 80: 8566-81. PMID 16912306 DOI: 10.1128/Jvi.00837-06 |
0.8 |
|
| 2005 |
Qi Y, Hannon GJ. Uncovering RNAi mechanisms in plants: biochemistry enters the foray. Febs Letters. 579: 5899-903. PMID 16154569 DOI: 10.1016/J.Febslet.2005.08.035 |
0.515 |
|
| 2005 |
Qi Y, Denli AM, Hannon GJ. Biochemical specialization within Arabidopsis RNA silencing pathways. Molecular Cell. 19: 421-8. PMID 16061187 DOI: 10.1016/J.Molcel.2005.06.014 |
0.634 |
|
| 2004 |
Qi Y, Zhong X, Itaya A, Ding B. Dissecting RNA silencing in protoplasts uncovers novel effects of viral suppressors on the silencing pathway at the cellular level. Nucleic Acids Research. 32: e179. PMID 15601991 DOI: 10.1093/Nar/Gnh180 |
0.808 |
|
| 2004 |
Qi Y, Pélissier T, Itaya A, Hunt E, Wassenegger M, Ding B. Direct role of a viroid RNA motif in mediating directional RNA trafficking across a specific cellular boundary. The Plant Cell. 16: 1741-52. PMID 15194818 DOI: 10.1105/Tpc.021980 |
0.749 |
|
| 2003 |
Ding B, Itaya A, Qi Y. Symplasmic protein and RNA traffic: regulatory points and regulatory factors. Current Opinion in Plant Biology. 6: 596-602. PMID 14611959 DOI: 10.1016/J.Pbi.2003.09.010 |
0.729 |
|
| 2003 |
Qi Y, Ding B. Differential subnuclear localization of RNA strands of opposite polarity derived from an autonomously replicating viroid. The Plant Cell. 15: 2566-77. PMID 14555700 DOI: 10.1105/Tpc.016576 |
0.666 |
|
| 2003 |
Qi Y, Ding B. Inhibition of cell growth and shoot development by a specific nucleotide sequence in a noncoding viroid RNA. The Plant Cell. 15: 1360-74. PMID 12782729 DOI: 10.1105/Tpc.011585 |
0.625 |
|
| 2002 |
Qi Y, Ding B. Replication of Potato spindle tuber viroid in cultured cells of tobacco and Nicotiana benthamiana: the role of specific nucleotides in determining replication levels for host adaptation. Virology. 302: 445-56. PMID 12441088 DOI: 10.1006/Viro.2002.1662 |
0.488 |
|
| 2002 |
Zhu Y, Qi Y, Xun Y, Owens R, Ding B. Movement of potato spindle tuber viroid reveals regulatory points of phloem-mediated RNA traffic. Plant Physiology. 130: 138-46. PMID 12226494 DOI: 10.1104/Pp.006403 |
0.656 |
|
| 2002 |
Itaya A, Ma F, Qi Y, Matsuda Y, Zhu Y, Liang G, Ding B. Plasmodesma-mediated selective protein traffic between "symplasmically isolated" cells probed by a viral movement protein. The Plant Cell. 14: 2071-83. PMID 12215506 DOI: 10.1105/Tpc.003954 |
0.679 |
|
| 2001 |
Zhou XP, Qi YJ, Li F, Huang XZ, Li DB. Complete Nucleotide Sequence and Possible Genomic Expression Strategy of a Chinese Isolate of Broad Bean Wilt Virus. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao Acta Biochimica Et Biophysica Sinica. 33: 46-52. PMID 12053188 |
0.314 |
|
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