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Juan Ignacio Fuxman Bass, PhD - Publications

Affiliations: 
2016- Biology Boston University, Boston, MA, United States 
Area:
transcriptional regulation, immunology, cancer, alternative splicing
Website:
https://www.fuxmanlab.com/
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lu Y, Berenson A, Lane R, Guelin I, Li Z, Chen Y, Shah S, Yin M, Soto-Ugaldi LF, Fiszbein A, Fuxman Bass JI. A large-scale cancer-specific protein-DNA interaction network. Biorxiv : the Preprint Server For Biology. PMID 38352498 DOI: 10.1101/2024.01.24.577099  0.412
2023 Patalano SD, Fuxman Bass P, Fuxman Bass JI. Transcription factors in the development and treatment of immune disorders. Transcription. 1-23. PMID 38100543 DOI: 10.1080/21541264.2023.2294623  0.655
2023 He 何璇 XA, Berenson A, Bernard M, Weber C, Cook L, Visel A, Fuxman Bass JI, Fisher S. Identification of conserved skeletal enhancers associated with craniosynostosis risk genes. Human Molecular Genetics. PMID 37883470 DOI: 10.1093/hmg/ddad182  0.302
2023 Berenson A, Lane R, Soto-Ugaldi LF, Patel M, Ciausu C, Li Z, Chen Y, Shah S, Santoso C, Liu X, Spirohn K, Hao T, Hill DE, Vidal M, Fuxman Bass JI. Paired yeast one-hybrid assays to detect DNA-binding cooperativity and antagonism across transcription factors. Nature Communications. 14: 6570. PMID 37853017 DOI: 10.1038/s41467-023-42445-6  0.576
2023 Carrasco Pro S, Hook H, Bray D, Berenzy D, Moyer D, Yin M, Labadorf AT, Tewhey R, Siggers T, Fuxman Bass JI. Widespread perturbation of ETS factor binding sites in cancer. Nature Communications. 14: 913. PMID 36808133 DOI: 10.1038/s41467-023-36535-8  0.719
2022 Berenson A, Fuxman Bass JI. Enhanced Yeast One-Hybrid Assays to Study Protein-DNA Interactions. Methods in Molecular Biology (Clifton, N.J.). 2599: 11-20. PMID 36427139 DOI: 10.1007/978-1-0716-2847-8_2  0.329
2021 Kuniholm J, Armstrong E, Bernabe B, Coote C, Berenson A, Patalano SD, Olson A, He X, Lin NH, Fuxman Bass JI, Henderson AJ. Intragenic proviral elements support transcription of defective HIV-1 proviruses. Plos Pathogens. 17: e1009982. PMID 34962974 DOI: 10.1371/journal.ppat.1009982  0.633
2021 Pedro KD, Agosto LM, Sewell JA, Eberenz KA, He X, Fuxman Bass JI, Henderson AJ. A functional screen identifies transcriptional networks that regulate HIV-1 and HIV-2. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33836568 DOI: 10.1073/pnas.2012835118  0.357
2021 Carrasco Pro S, Bulekova K, Gregor B, Labadorf A, Fuxman Bass JI. Publisher Correction: Prediction of genome-wide effects of single nucleotide variants on transcription factor binding. Scientific Reports. 11: 3395. PMID 33536541 DOI: 10.1038/s41598-021-83094-3  0.305
2020 Santoso CS, Li Z, Lal S, Yuan S, Gan KA, Agosto LM, Liu X, Pro SC, Sewell JA, Henderson A, Atianand MK, Fuxman Bass JI. Comprehensive mapping of the human cytokine gene regulatory network. Nucleic Acids Research. PMID 33179750 DOI: 10.1093/nar/gkaa1055  0.376
2020 Carrasco Pro S, Bulekova K, Gregor B, Labadorf A, Fuxman Bass JI. Prediction of genome-wide effects of single nucleotide variants on transcription factor binding. Scientific Reports. 10: 17632. PMID 33077858 DOI: 10.1038/s41598-020-74793-4  0.399
2019 Shrestha S, Liu X, Santoso CS, Fuxman Bass JI. Enhanced Yeast One-hybrid Screens To Identify Transcription Factor Binding To Human DNA Sequences. Journal of Visualized Experiments : Jove. PMID 30799854 DOI: 10.3791/59192  0.332
2018 Carrasco Pro S, Dafonte Imedio A, Santoso CS, Gan KA, Sewell JA, Martinez M, Sereda R, Mehta S, Fuxman Bass JI. Global landscape of mouse and human cytokine transcriptional regulation. Nucleic Acids Research. PMID 30184180 DOI: 10.1093/nar/gky787  0.4
2018 Sewell JA, Fuxman Bass JI. Options and Considerations When Using a Yeast One-Hybrid System. Methods in Molecular Biology (Clifton, N.J.). 1794: 119-130. PMID 29855954 DOI: 10.1007/978-1-4939-7871-7_8  0.356
2016 Fuxman Bass JI, Reece-Hoyes JS, Walhout AJ. Gene-Centered Yeast One-Hybrid Assays. Cold Spring Harbor Protocols. 2016: pdb.top077669. PMID 27934693 DOI: 10.1101/pdb.top077669  0.69
2016 Fuxman Bass JI, Reece-Hoyes JS, Walhout AJ. Zymolyase-Treatment and Polymerase Chain Reaction Amplification from Genomic and Plasmid Templates from Yeast. Cold Spring Harbor Protocols. 2016: pdb.prot088971. PMID 27934686 DOI: 10.1101/pdb.prot088971  0.57
2016 Fuxman Bass JI, Reece-Hoyes JS, Walhout AJ. Colony Lift Colorimetric Assay for β-Galactosidase Activity. Cold Spring Harbor Protocols. 2016: pdb.prot088963. PMID 27934685 DOI: 10.1101/pdb.prot088963  0.617
2016 Fuxman Bass JI, Reece-Hoyes JS, Walhout AJ. Performing Yeast One-Hybrid Library Screens. Cold Spring Harbor Protocols. 2016: pdb.prot088955. PMID 27934684 DOI: 10.1101/pdb.prot088955  0.628
2016 Fuxman Bass JI, Reece-Hoyes JS, Walhout AJ. Generating Bait Strains for Yeast One-Hybrid Assays. Cold Spring Harbor Protocols. 2016: pdb.prot088948. PMID 27934683 DOI: 10.1101/pdb.prot088948  0.614
2016 Fuxman Bass JI, Pons C, Kozlowski L, Reece-Hoyes JS, Shrestha S, Holdorf AD, Mori A, Myers CL, Walhout AJ. A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions. Molecular Systems Biology. 12: 884. PMID 27777270 DOI: 10.15252/msb.20167131  0.688
2015 Fuxman Bass JI, Sahni N, Shrestha S, Garcia-Gonzalez A, Mori A, Bhat N, Yi S, Hill DE, Vidal M, Walhout AJ. Human gene-centered transcription factor networks for enhancers and disease variants. Cell. 161: 661-73. PMID 25910213 DOI: 10.1016/J.Cell.2015.03.003  0.723
2015 Sahni N, Yi S, Taipale M, Fuxman Bass JI, Coulombe-Huntington J, Yang F, Peng J, Weile J, Karras GI, Wang Y, Kovács IA, Kamburov A, Krykbaeva I, Lam MH, Tucker G, et al. Widespread macromolecular interaction perturbations in human genetic disorders. Cell. 161: 647-60. PMID 25910212 DOI: 10.1016/J.Cell.2015.04.013  0.675
2015 Narasimhan K, Lambert SA, Yang AW, Riddell J, Mnaimneh S, Zheng H, Albu M, Najafabadi HS, Reece-Hoyes JS, Fuxman Bass JI, Walhout AJ, Weirauch MT, Hughes TR. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities. Elife. 4. PMID 25905672 DOI: 10.7554/eLife.06967  0.688
2014 Fuxman Bass JI, Tamburino AM, Mori A, Beittel N, Weirauch MT, Reece-Hoyes JS, Walhout AJ. Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters. Nucleic Acids Research. 42: 153-62. PMID 24068555 DOI: 10.1093/Nar/Gkt858  0.704
2013 Fuxman Bass JI, Diallo A, Nelson J, Soto JM, Myers CL, Walhout AJ. Using networks to measure similarity between genes: association index selection. Nature Methods. 10: 1169-76. PMID 24296474 DOI: 10.1038/nmeth.2728  0.591
2013 Ritter AD, Shen Y, Fuxman Bass J, Jeyaraj S, Deplancke B, Mukhopadhyay A, Xu J, Driscoll M, Tissenbaum HA, Walhout AJ. Complex expression dynamics and robustness in C. elegans insulin networks. Genome Research. 23: 954-65. PMID 23539137 DOI: 10.1101/Gr.150466.112  0.675
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