| Year |
Citation |
Score |
| 2024 |
von der Dunk SHA, Hogeweg P, Snel B. Intracellular signaling in proto-eukaryotes evolves to alleviate regulatory conflicts of endosymbiosis. Plos Computational Biology. 20: e1011860. PMID 38335232 DOI: 10.1371/journal.pcbi.1011860 |
0.554 |
|
| 2023 |
von der Dunk SHA, Hogeweg P, Snel B. Obligate endosymbiosis enables genome expansion during eukaryogenesis. Communications Biology. 6: 777. PMID 37491455 DOI: 10.1038/s42003-023-05153-x |
0.573 |
|
| 2022 |
von der Dunk SHA, Snel B, Hogeweg P. Evolution of Complex Regulation for Cell-Cycle Control. Genome Biology and Evolution. 14. PMID 35482058 DOI: 10.1093/gbe/evac056 |
0.601 |
|
| 2020 |
van Dijk B, Hogeweg P, Doekes HM, Takeuchi N. Slightly beneficial genes are retained by bacteria evolving DNA uptake despite selfish elements. Elife. 9. PMID 32432548 DOI: 10.7554/Elife.56801 |
0.325 |
|
| 2019 |
van Dijk B, Meijer J, Cuypers TD, Hogeweg P. Trusting the hand that feeds: microbes evolve to anticipate a serial transfer protocol as individuals or collectives. Bmc Evolutionary Biology. 19: 201. PMID 31684861 DOI: 10.1186/S12862-019-1512-2 |
0.311 |
|
| 2019 |
Colizzi ES, Hogeweg P. Transcriptional Mutagenesis Prevents Ribosomal DNA Deterioration: The Role of Duplications and Deletions. Genome Biology and Evolution. 11: 3207-3217. PMID 31651950 DOI: 10.1093/Gbe/Evz235 |
0.338 |
|
| 2017 |
von der Dunk SHA, Colizzi ES, Hogeweg P. Evolutionary Conflict Leads to Innovation: Symmetry Breaking in a Spatial Model of RNA-Like Replicators. Life (Basel, Switzerland). 7. PMID 29099079 DOI: 10.3390/Life7040043 |
0.334 |
|
| 2017 |
Takeuchi N, Hogeweg P, Kaneko K. The origin of a primordial genome through spontaneous symmetry breaking. Nature Communications. 8: 250. PMID 28811464 DOI: 10.1038/S41467-017-00243-X |
0.324 |
|
| 2017 |
Cuypers TD, Rutten JP, Hogeweg P. Evolution of evolvability and phenotypic plasticity in virtual cells. Bmc Evolutionary Biology. 17: 60. PMID 28241744 DOI: 10.1186/S12862-017-0918-Y |
0.323 |
|
| 2016 |
Takeuchi N, Kaneko K, Hogeweg P. Evolutionarily stable disequilibrium: endless dynamics of evolution in a stationary population. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27147095 DOI: 10.1098/Rspb.2015.3109 |
0.324 |
|
| 2016 |
Colizzi ES, Hogeweg P. Parasites Sustain and Enhance RNA-Like Replicators through Spatial Self-Organisation. Plos Computational Biology. 12: e1004902. PMID 27120344 DOI: 10.1371/Journal.Pcbi.1004902 |
0.319 |
|
| 2015 |
van Dijk B, Hogeweg P. In silico gene-level evolution explains microbial population diversity through differential gene mobility. Genome Biology and Evolution. PMID 26710854 DOI: 10.1093/Gbe/Evv255 |
0.363 |
|
| 2014 |
de Boer FK, Hogeweg P. Mutation rates and evolution of multiple coding in RNA-based protocells. Journal of Molecular Evolution. 79: 193-203. PMID 25280530 DOI: 10.1007/S00239-014-9648-6 |
0.336 |
|
| 2014 |
Colizzi ES, Hogeweg P. Evolution of functional diversification within quasispecies. Genome Biology and Evolution. 6: 1990-2007. PMID 25056399 DOI: 10.1093/Gbe/Evu150 |
0.372 |
|
| 2014 |
Cuypers TD, Hogeweg P. A synergism between adaptive effects and evolvability drives whole genome duplication to fixation. Plos Computational Biology. 10: e1003547. PMID 24743268 DOI: 10.1371/Journal.Pcbi.1003547 |
0.411 |
|
| 2012 |
Hogeweg P. Toward a theory of multilevel evolution: long-term information integration shapes the mutational landscape and enhances evolvability. Advances in Experimental Medicine and Biology. 751: 195-224. PMID 22821460 DOI: 10.1007/978-1-4614-3567-9_10 |
0.363 |
|
| 2012 |
Fokkens L, Hogeweg P, Snel B. Gene duplications contribute to the overrepresentation of interactions between proteins of a similar age. Bmc Evolutionary Biology. 12: 99. PMID 22732003 DOI: 10.1186/1471-2148-12-99 |
0.568 |
|
| 2012 |
Takeuchi N, Hogeweg P. Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life. Physics of Life Reviews. 9: 219-63. PMID 22727399 DOI: 10.1016/J.Plrev.2012.06.001 |
0.314 |
|
| 2012 |
de Boer FK, Hogeweg P. Less can be more: RNA-adapters may enhance coding capacity of replicators. Plos One. 7: e29952. PMID 22291898 DOI: 10.1371/Journal.Pone.0029952 |
0.335 |
|
| 2012 |
Cuypers TD, Hogeweg P. Virtual genomes in flux: an interplay of neutrality and adaptability explains genome expansion and streamlining. Genome Biology and Evolution. 4: 212-29. PMID 22234601 DOI: 10.1093/Gbe/Evr141 |
0.383 |
|
| 2012 |
Takeuchi N, Hogeweg P. Reply to the commentaries on "Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life" Physics of Life Reviews. 9: 279-284. DOI: 10.1016/J.Plrev.2012.07.009 |
0.308 |
|
| 2012 |
Hogeweg P. James A. Shapiro: Evolution: a view from the twenty-first century : FT Press Science, Upper Saddle River, New Jersey 07458, ISBN 10: 0-13278093-3 Evolutionary Intelligence. 5: 207-209. DOI: 10.1007/S12065-012-0069-4 |
0.403 |
|
| 2011 |
Ten Tusscher KH, Hogeweg P. Evolution of networks for body plan patterning; interplay of modularity, robustness and evolvability. Plos Computational Biology. 7: e1002208. PMID 21998573 DOI: 10.1371/Journal.Pcbi.1002208 |
0.302 |
|
| 2010 |
de Boer FK, Hogeweg P. Eco-evolutionary dynamics, coding structure and the information threshold. Bmc Evolutionary Biology. 10: 361. PMID 21106077 DOI: 10.1186/1471-2148-10-361 |
0.323 |
|
| 2010 |
Cuypers T, Hogeweg P. Genome size: neutrality and adaptation F1000research. 1. DOI: 10.7490/F1000Research.299.1 |
0.302 |
|
| 2009 |
Cordero OX, Hogeweg P. The impact of long-distance horizontal gene transfer on prokaryotic genome size. Proceedings of the National Academy of Sciences of the United States of America. 106: 21748-53. PMID 20007373 DOI: 10.1073/Pnas.0907584106 |
0.668 |
|
| 2009 |
Takeuchi N, Hogeweg P. Multilevel selection in models of prebiotic evolution II: a direct comparison of compartmentalization and spatial self-organization. Plos Computational Biology. 5: e1000542. PMID 19834556 DOI: 10.1371/Journal.Pcbi.1000542 |
0.357 |
|
| 2009 |
van Hoek MJ, Hogeweg P. Metabolic adaptation after whole genome duplication. Molecular Biology and Evolution. 26: 2441-53. PMID 19625390 DOI: 10.1093/Molbev/Msp160 |
0.372 |
|
| 2009 |
ten Tusscher KH, Hogeweg P. The role of genome and gene regulatory network canalization in the evolution of multi-trait polymorphisms and sympatric speciation. Bmc Evolutionary Biology. 9: 159. PMID 19589138 DOI: 10.1186/1471-2148-9-159 |
0.355 |
|
| 2009 |
Cordero OX, Hogeweg P. The consequences of base pair composition biases for regulatory network organization in prokaryotes. Molecular Biology and Evolution. 26: 2171-3. PMID 19567917 DOI: 10.1093/Molbev/Msp132 |
0.649 |
|
| 2009 |
Cordero OX, Hogeweg P. Regulome size in Prokaryotes: universality and lineage-specific variations. Trends in Genetics : Tig. 25: 285-6. PMID 19540614 DOI: 10.1016/J.Tig.2009.05.001 |
0.641 |
|
| 2008 |
Crombach A, Hogeweg P. Evolution of evolvability in gene regulatory networks. Plos Computational Biology. 4: e1000112. PMID 18617989 DOI: 10.1371/Journal.Pcbi.1000112 |
0.364 |
|
| 2008 |
Cordero OX, Snel B, Hogeweg P. Coevolution of gene families in prokaryotes. Genome Research. 18: 462-8. PMID 18230804 DOI: 10.1101/Gr.6815508 |
0.711 |
|
| 2007 |
Takeuchi N, Hogeweg P. The role of complex formation and deleterious mutations for the stability of RNA-like replicator systems. Journal of Molecular Evolution. 65: 668-86. PMID 17955153 DOI: 10.1007/S00239-007-9044-6 |
0.307 |
|
| 2007 |
van Hoek MJ, Hogeweg P. The role of mutational dynamics in genome shrinkage. Molecular Biology and Evolution. 24: 2485-94. PMID 17768305 DOI: 10.1093/Molbev/Msm183 |
0.371 |
|
| 2007 |
Cordero OX, Hogeweg P. Large changes in regulome size herald the main prokaryotic lineages. Trends in Genetics : Tig. 23: 488-93. PMID 17692992 DOI: 10.1016/J.Tig.2007.07.006 |
0.654 |
|
| 2007 |
van Hoek M, Hogeweg P. The effect of stochasticity on the lac operon: an evolutionary perspective. Plos Computational Biology. 3: e111. PMID 17590077 DOI: 10.1371/Journal.Pcbi.0030111 |
0.348 |
|
| 2007 |
Crombach A, Hogeweg P. Chromosome rearrangements and the evolution of genome structuring and adaptability. Molecular Biology and Evolution. 24: 1130-9. PMID 17322554 DOI: 10.1093/Molbev/Msm033 |
0.37 |
|
| 2006 |
Cordero OX, Hogeweg P. Feed-forward loop circuits as a side effect of genome evolution. Molecular Biology and Evolution. 23: 1931-6. PMID 16840361 DOI: 10.1093/Molbev/Msl060 |
0.666 |
|
| 2003 |
Hogeweg P, Takeuchi N. Multilevel selection in models of prebiotic evolution: compartments and spatial self-organization. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 33: 375-403. PMID 14604183 DOI: 10.1023/A:1025754907141 |
0.329 |
|
| 2003 |
Kesmir C, van Noort V, de Boer RJ, Hogeweg P. Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome. Immunogenetics. 55: 437-49. PMID 12955356 DOI: 10.1007/S00251-003-0585-6 |
0.605 |
|
| 2002 |
Hogeweg P. Computing an organism: on the interface between informatic and dynamic processes. Bio Systems. 64: 97-109. PMID 11755492 DOI: 10.1016/S0303-2647(01)00178-2 |
0.348 |
|
| 2002 |
Hogeweg P. Multilevel evolution: The fate of duplicated genes Zeitschrift Fur Physikalische Chemie. 216: 77-90. DOI: 10.1524/Zpch.2002.216.1.077 |
0.398 |
|
| 2000 |
Hogeweg P. Shapes in the shadow: evolutionary dynamics of morphogenesis. Artificial Life. 6: 85-101. PMID 10943667 DOI: 10.1162/106454600568339 |
0.358 |
|
| 2000 |
Hogeweg P. Evolving mechanisms of morphogenesis: on the interplay between differential adhesion and cell differentiation. Journal of Theoretical Biology. 203: 317-33. PMID 10736211 DOI: 10.1006/Jtbi.2000.1087 |
0.303 |
|
| 1997 |
Savill NJ, Hogeweg P. Modelling Morphogenesis: From Single Cells to Crawling Slugs. Journal of Theoretical Biology. 184: 229-235. PMID 31940735 DOI: 10.1006/Jtbi.1996.0237 |
0.304 |
|
| 1997 |
Savill NJ, Rohani P, Hogeweg P. Self-reinforcing spatial patterns enslave evolution in a host-parasitoid system. Journal of Theoretical Biology. 188: 11-20. PMID 9299306 DOI: 10.1006/Jtbi.1997.0448 |
0.324 |
|
| 1994 |
Huynen MA, Hogeweg P. Pattern generation in molecular evolution: exploitation of the variation in RNA landscapes. Journal of Molecular Evolution. 39: 71-9. PMID 7520506 DOI: 10.1007/Bf00178251 |
0.542 |
|
| 1994 |
Hogeweg P. Multilevel evolution: replicators and the evolution of diversity Physica D: Nonlinear Phenomena. 75: 275-291. DOI: 10.1016/0167-2789(94)90288-7 |
0.342 |
|
| 1993 |
Huynen MA, Konings DA, Hogeweg P. Multiple coding and the evolutionary properties of RNA secondary structure. Journal of Theoretical Biology. 165: 251-67. PMID 7507189 DOI: 10.1006/Jtbi.1993.1188 |
0.563 |
|
| 1992 |
Huynen MA, Konings DA, Hogeweg P. Equal G and C contents in histone genes indicate selection pressures on mRNA secondary structure. Journal of Molecular Evolution. 34: 280-91. PMID 1569583 DOI: 10.1007/Bf00160235 |
0.445 |
|
| 1992 |
Hogeweg P, Hesper B. Evolutionary dynamics and the coding structure of sequences: Multiple coding as a consequence of crossover and high mutation rates Computers and Chemistry. 16: 171-182. DOI: 10.1016/0097-8485(92)80044-Z |
0.304 |
|
| 1989 |
Hogeweg P. Simplicity and complexity in MIRROR universes. Bio Systems. 23: 231-44; discussion 2. PMID 2627567 DOI: 10.1016/0303-2647(89)90029-4 |
0.307 |
|
| 1988 |
Konings DA, Bredenbeek PJ, Noten JF, Hogeweg P, Spaan WJ. Differential premature termination of transcription as a proposed mechanism for the regulation of coronavirus gene expression. Nucleic Acids Research. 16: 10849-60. PMID 2905039 DOI: 10.1093/Nar/16.22.10849 |
0.312 |
|
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