Jian Ma, Ph.D.
Affiliations: | 2006 | Pennsylvania State University, State College, PA, United States |
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"Jian Ma"Parents
Sign in to add mentor| Webb Miller | grad student | 2006 | Penn State | |
| (Reconstructing contiguous regions of an ancestral genome.) | ||||
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Publications
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| Kumar P, Gholamalamdari O, Zhang Y, et al. (2023) Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types. Biorxiv : the Preprint Server For Biology |
| Calandrelli R, Wen X, Charles Richard JL, et al. (2023) Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells. Nature Communications. 14: 6519 |
| Zhang Y, Boninsegna L, Yang M, et al. (2023) Computational methods for analysing multiscale 3D genome organization. Nature Reviews. Genetics |
| Zhou T, Zhang R, Jia D, et al. (2023) Concurrent profiling of multiscale 3D genome organization and gene expression in single mammalian cells. Biorxiv : the Preprint Server For Biology |
| Dekker J, Alber F, Aufmkolk S, et al. (2023) Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project. Molecular Cell |
| Yang M, Ma J. (2023) UNADON: transformer-based model to predict genome-wide chromosome spatial position. Bioinformatics (Oxford, England). 39: i553-i562 |
| Yang M, Ma J. (2023) UNADON: Transformer-based model to predict genome-wide chromosome spatial position. Arxiv |
| Kamat K, Lao Z, Qi Y, et al. (2023) Compartmentalization with nuclear landmarks yields random, yet precise, genome organization. Biophysical Journal |
| Locke DP, Hillier LW, Warren WC, et al. (2022) Author Correction: Comparative and demographic analysis of orang-utan genomes. Nature |
| Kuang W, Zhang L, Ye L, et al. (2022) Genome and Transcriptome Sequencing Analysis of Fusarium Provides Insights into the Pathogenic Mechanisms of the Lotus Rhizome Rot. Microbiology Spectrum. e0017522 |