| Year |
Citation |
Score |
| 2019 |
Shrestha UR, Juneja P, Zhang Q, Gurumoorthy V, Borreguero JM, Urban V, Cheng X, Pingali SV, Smith JC, O'Neill HM, Petridis L. Generation of the configurational ensemble of an intrinsically disordered protein from unbiased molecular dynamics simulation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31548393 DOI: 10.1073/Pnas.1907251116 |
0.43 |
|
| 2018 |
Duff MR, Borreguero JM, Cuneo M, Ramanathan A, He J, Kamath G, Chennubhotla CS, Meilleur F, Howell EE, Herwig KW, Myles DAA, Agarwal PK. Modulating enzyme activity by altering protein dynamics with solvent. Biochemistry. PMID 29901984 DOI: 10.1021/Acs.Biochem.8B00424 |
0.359 |
|
| 2017 |
Borreguero JM, Pincus PA, Sumpter BG, Goswami M. Dynamics Of Charged Species in Ionic-Neutral Block Copolymer and Surfactant Complexes. The Journal of Physical Chemistry. B. PMID 28636369 DOI: 10.1021/Acs.Jpcb.7B05047 |
0.31 |
|
| 2017 |
Borreguero JM, Pincus PA, Sumpter BG, Goswami M. Unraveling the Agglomeration Mechanism in Charged Block Copolymer and Surfactant Complexes Macromolecules. 50: 1193-1205. DOI: 10.1021/Acs.Macromol.6B02319 |
0.315 |
|
| 2016 |
Stack AG, Borreguero JM, Prisk TR, Mamontov E, Wang HW, Vlcek L, Wesolowski DJ. Precise determination of water exchanges on a mineral surface. Physical Chemistry Chemical Physics : Pccp. PMID 27722503 DOI: 10.1039/C6Cp05836A |
0.329 |
|
| 2016 |
Mamontov E, Sharma VK, Borreguero JM, Tyagi M. Protein-Style Dynamical Transition in a non-Biological Polymer and a non-Aqueous Solvent. The Journal of Physical Chemistry. B. PMID 26977709 DOI: 10.1021/Acs.Jpcb.6B00866 |
0.443 |
|
| 2015 |
Borreguero JM, Lynch VE. Molecular dynamics force-field refinement against quasi elastic neutron scattering data. Journal of Chemical Theory and Computation. PMID 26616475 DOI: 10.1021/Acs.Jctc.5B00878 |
0.35 |
|
| 2015 |
Goswami M, Borreguero JM, Sumpter BG. Self-assembly and structural relaxation in a model ionomer melt. The Journal of Chemical Physics. 142: 084903. PMID 25725753 DOI: 10.1063/1.4913517 |
0.329 |
|
| 2015 |
Goswami M, Borreguero JM, Pincus PA, Sumpter BG. Surfactant-Mediated Polyelectrolyte Self-Assembly in a Polyelectrolyte-Surfactant Complex Macromolecules. 48: 9050-9059. DOI: 10.1021/Acs.Macromol.5B02145 |
0.302 |
|
| 2011 |
Borreguero JM, He J, Meilleur F, Weiss KL, Brown CM, Myles DA, Herwig KW, Agarwal PK. Redox-promoting protein motions in rubredoxin. The Journal of Physical Chemistry. B. 115: 8925-36. PMID 21608980 DOI: 10.1021/Jp201346X |
0.394 |
|
| 2011 |
Ramanathan A, Borreguero JM, Chennubhotla CS, Agarwal PK. Protein Flexibility and Energy Flow During Enzyme Catalysis Biophysical Journal. 100: 194a. DOI: 10.1016/J.Bpj.2010.12.1277 |
0.432 |
|
| 2009 |
Ramanathan A, Borreguero J, Langmead CJ, Agarwal PK. Conserved Protein Flexibility And Pathways Of Energy Flow In Enzyme Catalysis Biophysical Journal. 96: 71a. DOI: 10.1016/J.Bpj.2008.12.265 |
0.408 |
|
| 2007 |
Lam AR, Borreguero JM, Ding F, Dokholyan NV, Buldyrev SV, Stanley HE, Shakhnovich E. Parallel folding pathways in the SH3 domain protein. Journal of Molecular Biology. 373: 1348-60. PMID 17900612 DOI: 10.1016/J.Jmb.2007.08.032 |
0.679 |
|
| 2007 |
Zhou H, Pandit SB, Lee SY, Borreguero J, Chen H, Wroblewska L, Skolnick J. Analysis of TASSER-based CASP7 protein structure prediction results. Proteins. 69: 90-7. PMID 17705276 DOI: 10.1002/Prot.21649 |
0.349 |
|
| 2007 |
Borreguero JM, Skolnick J. Benchmarking of TASSER in the ab initio limit. Proteins. 68: 48-56. PMID 17444524 DOI: 10.1002/Prot.21392 |
0.462 |
|
| 2006 |
Urbanc B, Borreguero JM, Cruz L, Stanley HE. Ab initio discrete molecular dynamics approach to protein folding and aggregation. Methods in Enzymology. 412: 314-38. PMID 17046666 DOI: 10.1016/S0076-6879(06)12019-4 |
0.608 |
|
| 2006 |
Teplow DB, Lazo ND, Bitan G, Bernstein S, Wyttenbach T, Bowers MT, Baumketner A, Shea JE, Urbanc B, Cruz L, Borreguero J, Stanley HE. Elucidating amyloid beta-protein folding and assembly: A multidisciplinary approach. Accounts of Chemical Research. 39: 635-45. PMID 16981680 DOI: 10.1021/Ar050063S |
0.518 |
|
| 2005 |
Cruz L, Urbanc B, Borreguero JM, Lazo ND, Teplow DB, Stanley HE. Solvent and mutation effects on the nucleation of amyloid beta-protein folding. Proceedings of the National Academy of Sciences of the United States of America. 102: 18258-63. PMID 16339896 DOI: 10.1073/Pnas.0509276102 |
0.529 |
|
| 2005 |
Borreguero JM, Urbanc B, Lazo ND, Buldyrev SV, Teplow DB, Stanley HE. Folding events in the 21-30 region of amyloid beta-protein (Abeta) studied in silico. Proceedings of the National Academy of Sciences of the United States of America. 102: 6015-20. PMID 15837927 DOI: 10.1073/Pnas.0502006102 |
0.55 |
|
| 2004 |
Borreguero JM, Ding F, Buldyrev SV, Stanley HE, Dokholyan NV. Multiple folding pathways of the SH3 domain. Biophysical Journal. 87: 521-33. PMID 15240485 DOI: 10.1529/Biophysj.104.039529 |
0.655 |
|
| 2003 |
Dokholyan NV, Borreguero JM, Buldyrev SV, Ding F, Stanley HE, Shakhnovich EI. Identifying importance of amino acids for protein folding from crystal structures. Methods in Enzymology. 374: 616-38. PMID 14696390 DOI: 10.1016/S0076-6879(03)74025-7 |
0.666 |
|
| 2003 |
Marqués MI, Borreguero JM, Stanley HE, Dokholyan NV. Possible mechanism for cold denaturation of proteins at high pressure. Physical Review Letters. 91: 138103. PMID 14525339 DOI: 10.1103/Physrevlett.91.138103 |
0.59 |
|
| 2003 |
Ding F, Borreguero JM, Buldyrey SV, Stanley HE, Dokholyan NV. Mechanism for the alpha-helix to beta-hairpin transition. Proteins. 53: 220-8. PMID 14517973 DOI: 10.1002/Prot.10468 |
0.617 |
|
| 2002 |
Borreguero JM, Dokholyan NV, Buldyrev SV, Shakhnovich EI, Stanley HE. Thermodynamics and folding kinetics analysis of the SH3 domain form discrete molecular dynamics. Journal of Molecular Biology. 318: 863-76. PMID 12054829 DOI: 10.1016/S0022-2836(02)00136-5 |
0.668 |
|
| Show low-probability matches. |