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Matthew Levy, Ph.D. - Publications

Affiliations: 
2003 University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Molecular Biology
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63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kelly L, Maier KE, Yan A, Levy M. A comparative analysis of cell surface targeting aptamers. Nature Communications. 12: 6275. PMID 34725326 DOI: 10.1038/s41467-021-26463-w  0.597
2019 Kamatkar N, Levy M, Hébert JM. Development of a Monomeric Inhibitory RNA Aptamer Specific for FGFR3 that Acts as an Activator When Dimerized. Molecular Therapy. Nucleic Acids. 17: 530-539. PMID 31357131 DOI: 10.1016/J.Omtn.2019.06.020  0.384
2018 Yan AC, Levy M. Aptamer-Mediated Delivery and Cell-Targeting Aptamers: Room for Improvement. Nucleic Acid Therapeutics. 28: 194-199. PMID 29883295 DOI: 10.1089/Nat.2018.0732  0.597
2018 Kratschmer C, Levy M. Targeted Delivery of Auristatin-Modified Toxins to Pancreatic Cancer Using Aptamers. Molecular Therapy. Nucleic Acids. 10: 227-236. PMID 29499935 DOI: 10.1016/J.Omtn.2017.11.013  0.317
2017 Kratschmer C, Levy M. Effect of Chemical Modifications on Aptamer Stability in Serum. Nucleic Acid Therapeutics. PMID 28945147 DOI: 10.1089/Nat.2017.0680  0.334
2016 Kelly L, Kratschmer C, Maier KE, Yan AC, Levy M. Improved Synthesis and In Vitro Evaluation of an Aptamer Ribosomal Toxin Conjugate. Nucleic Acid Therapeutics. PMID 27228412 DOI: 10.1089/Nat.2015.0599  0.594
2016 Maier KE, Jangra RK, Shieh KR, Cureton DK, Xiao H, Snapp EL, Whelan SP, Chandran K, Levy M. A New Transferrin Receptor Aptamer Inhibits New World Hemorrhagic Fever Mammarenavirus Entry. Molecular Therapy. Nucleic Acids. 5: e321. PMID 27219515 DOI: 10.1038/Mtna.2016.32  0.344
2016 Gianella P, Snapp E, Levy M. An in vitro compartmentalization based method for the selection of bond-forming enzymes from large libraries. Biotechnology and Bioengineering. PMID 26806853 DOI: 10.1002/Bit.25939  0.356
2016 Wilner SE, Levy M. Synthesis and Characterization of Aptamer-Targeted SNALPs for the Delivery of siRNA. Methods in Molecular Biology (Clifton, N.J.). 1380: 211-24. PMID 26552829 DOI: 10.1007/978-1-4939-3197-2_18  0.399
2015 Katakowski JA, Mukherjee G, Wilner SE, Maier KE, Harrison MT, DiLorenzo TP, Levy M, Palliser D. Delivery of siRNAs to Dendritic Cells Using DEC205-Targeted Lipid Nanoparticles to Inhibit Immune Responses. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 26412590 DOI: 10.1038/Mt.2015.175  0.304
2015 Kelly L, Maier K, Yan A, Levy M. 144. In Vivo Targeting hTfR and EGFR Using Aptamers Molecular Therapy. 23: S58-S59. DOI: 10.1016/S1525-0016(16)33749-2  0.635
2014 Trevino SG, Levy M. High-throughput bead-based identification of structure-switching aptamer beacons. Chembiochem : a European Journal of Chemical Biology. 15: 1877-81. PMID 25056925 DOI: 10.1002/Cbic.201402037  0.357
2014 Wengerter BC, Katakowski JA, Rosenberg JM, Park CG, Almo SC, Palliser D, Levy M. Aptamer-targeted antigen delivery. Molecular Therapy : the Journal of the American Society of Gene Therapy. 22: 1375-87. PMID 24682172 DOI: 10.1038/Mt.2014.51  0.332
2014 Padlan CS, Malashkevich VN, Almo SC, Levy M, Brenowitz M, Girvin ME. An RNA aptamer possessing a novel monovalent cation-mediated fold inhibits lysozyme catalysis by inhibiting the binding of long natural substrates. Rna (New York, N.Y.). 20: 447-61. PMID 24570482 DOI: 10.1261/Rna.043034.113  0.404
2014 Gollihar J, Levy M, Ellington AD. Biochemistry. Many paths to the origin of life. Science (New York, N.Y.). 343: 259-60. PMID 24436411 DOI: 10.1126/Science.1246704  0.431
2014 Lu WC, Levy M, Kincaid R, Ellington AD. Directed evolution of the substrate specificity of biotin ligase. Biotechnology and Bioengineering. 111: 1071-81. PMID 24375025 DOI: 10.1002/Bit.25176  0.517
2014 Yan A, Levy M. Cell internalization SELEX: in vitro selection for molecules that internalize into cells. Methods in Molecular Biology (Clifton, N.J.). 1103: 241-65. PMID 24318899 DOI: 10.1007/978-1-62703-730-3_18  0.64
2014 Padlan C, Malashkevich V, Almo S, Levy M, Brenowitz M, Girvin M. A Novel Monovalent Cation-Stabilized Fold Mediates an Aptamer-Protein Complex Acta Crystallographica Section a Foundations and Advances. 70: C1164-C1164. DOI: 10.1107/S2053273314088354  0.421
2013 Wilner SE, Wengerter B, Maier K, Magalhães MDLB, Amo DSD, Pai S, Opazo F, Rizzoli SO, Yan A, Levy M. Erratum: An RNA alternative to human transferrin: A new tool for targeting human cells (Molecular Therapy - Nucleic Acids (2013) 2 e79 Doi:10.1038/mtna. 2013.6) Molecular Therapy. Nucleic Acids. 2. PMID 23481355 DOI: 10.1038/Mtna.2013.6  0.611
2013 Padlan FS, Girvin M, Brenowitz M, Levy M, Almo S, Malashkevich V. Structural Insight into Protein Recognition by RNA Aptamers Biophysical Journal. 104: 254a. DOI: 10.1016/J.Bpj.2012.11.1427  0.428
2012 Davidson EA, Meyer AJ, Ellefson JW, Levy M, Ellington AD. An in vitro autogene. Acs Synthetic Biology. 1: 190-6. PMID 23651157 DOI: 10.1021/Sb3000113  0.761
2012 Wilner SE, Wengerter B, Maier K, de Lourdes Borba Magalhães M, Del Amo DS, Pai S, Opazo F, Rizzoli SO, Yan A, Levy M. An RNA alternative to human transferrin: a new tool for targeting human cells. Molecular Therapy. Nucleic Acids. 1: e21. PMID 23344001 DOI: 10.1038/Mtna.2012.14  0.641
2012 Opazo F, Levy M, Byrom M, Schäfer C, Geisler C, Groemer TW, Ellington AD, Rizzoli SO. Aptamers as potential tools for super-resolution microscopy. Nature Methods. 9: 938-9. PMID 23018995 DOI: 10.1038/Nmeth.2179  0.44
2012 Magalhães ML, Byrom M, Yan A, Kelly L, Li N, Furtado R, Palliser D, Ellington AD, Levy M. A general RNA motif for cellular transfection. Molecular Therapy : the Journal of the American Society of Gene Therapy. 20: 616-24. PMID 22233578 DOI: 10.1038/Mt.2011.277  0.7
2012 Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH, Chao JA. Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control. Genes & Development. 26: 43-53. PMID 22215810 DOI: 10.1101/Gad.177428.111  0.372
2012 Pastore C, Topalidou I, Forouhar F, Yan AC, Levy M, Hunt JF. Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification. The Journal of Biological Chemistry. 287: 2130-43. PMID 22065580 DOI: 10.1074/Jbc.M111.286187  0.611
2011 Levy M. Abstract LB-234: Aptamer-prodrugs for targeted cancer therapy Cancer Research. 71. DOI: 10.1158/1538-7445.Am2011-Lb-234  0.337
2010 Soriano Del Amo D, Wang W, Jiang H, Besanceney C, Yan AC, Levy M, Liu Y, Marlow FL, Wu P. Biocompatible copper(I) catalysts for in vivo imaging of glycans. Journal of the American Chemical Society. 132: 16893-9. PMID 21062072 DOI: 10.1021/Ja106553E  0.558
2010 Chao JA, Patskovsky Y, Patel V, Levy M, Almo SC, Singer RH. ZBP1 recognition of beta-actin zipcode induces RNA looping. Genes & Development. 24: 148-58. PMID 20080952 DOI: 10.1101/Gad.1862910  0.374
2010 Davidson EA, VAN Blarcom T, Levy M, Ellington AD. Emulsion based selection of T7 promoters of varying activity. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 433-43. PMID 19908395  0.436
2009 Chen X, Denison L, Levy M, Ellington AD. Direct selection for ribozyme cleavage activity in cells. Rna (New York, N.Y.). 15: 2035-45. PMID 19776159 DOI: 10.1261/Rna.1635209  0.555
2009 Davidson EA, Dlugosz PJ, Levy M, Ellington AD. Directed evolution of proteins in vitro using compartmentalization in emulsions. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 24.6. PMID 19575478 DOI: 10.1002/0471142727.Mb2406S87  0.538
2009 Narayanaswamy R, Levy M, Tsechansky M, Stovall GM, O'Connell JD, Mirrielees J, Ellington AD, Marcotte EM. Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation. Proceedings of the National Academy of Sciences of the United States of America. 106: 10147-52. PMID 19502427 DOI: 10.1073/Pnas.0812771106  0.615
2009 Yan AC, Levy M. Aptamers and aptamer targeted delivery. Rna Biology. 6: 316-20. PMID 19458497 DOI: 10.4161/Rna.6.3.8808  0.636
2009 Hall B, Cater S, Levy M, Ellington AD. Kinetic optimization of a protein-responsive aptamer beacon. Biotechnology and Bioengineering. 103: 1049-59. PMID 19431189 DOI: 10.1002/Bit.22355  0.691
2008 Levy M, Ellington AD. Directed evolution of streptavidin variants using in vitro compartmentalization. Chemistry & Biology. 15: 979-89. PMID 18804035 DOI: 10.1016/J.Chembiol.2008.07.017  0.524
2008 Tabor JJ, Bayer TS, Simpson ZB, Levy M, Ellington AD. Engineering stochasticity in gene expression. Molecular Biosystems. 4: 754-61. PMID 18563250 DOI: 10.1039/B801245H  0.618
2008 Javier DJ, Nitin N, Levy M, Ellington A, Richards-Kortum R. Aptamer-targeted gold nanoparticles as molecular-specific contrast agents for reflectance imaging. Bioconjugate Chemistry. 19: 1309-12. PMID 18512972 DOI: 10.1021/Bc8001248  0.483
2007 Sokolov K, Nida D, Descour M, Lacy A, Levy M, Hall B, Dharmawardhane S, Ellington A, Korgel B, Richards-Kortum R. Molecular optical imaging of therapeutic targets of cancer. Advances in Cancer Research. 96: 299-344. PMID 17161684 DOI: 10.1016/S0065-230X(06)96011-4  0.473
2006 Chu TC, Marks JW, Lavery LA, Faulkner S, Rosenblum MG, Ellington AD, Levy M. Aptamer:toxin conjugates that specifically target prostate tumor cells. Cancer Research. 66: 5989-92. PMID 16778167 DOI: 10.1158/0008-5472.Can-05-4583  0.518
2006 Chu TC, Twu KY, Ellington AD, Levy M. Aptamer mediated siRNA delivery. Nucleic Acids Research. 34: e73. PMID 16740739 DOI: 10.1093/Nar/Gkl388  0.516
2006 Tabor JJ, Levy M, Ellington AD. Deoxyribozymes that recode sequence information. Nucleic Acids Research. 34: 2166-72. PMID 16648360 DOI: 10.1093/Nar/Gkl176  0.645
2006 Chu TC, Shieh F, Lavery LA, Levy M, Richards-Kortum R, Korgel BA, Ellington AD. Labeling tumor cells with fluorescent nanocrystal-aptamer bioconjugates. Biosensors & Bioelectronics. 21: 1859-66. PMID 16495043 DOI: 10.1016/J.Bios.2005.12.015  0.516
2006 Levy M, Tabor J, Wong S. Taking pictures with E. coli: signal processing using synthetic biology Ieee Signal Processing Magazine. 23: 144-142. DOI: 10.1109/Msp.2006.1628897  0.566
2005 Levskaya A, Chevalier AA, Tabor JJ, Simpson ZB, Lavery LA, Levy M, Davidson EA, Scouras A, Ellington AD, Marcotte EM, Voigt CA. Synthetic biology: engineering Escherichia coli to see light. Nature. 438: 441-2. PMID 16306980 DOI: 10.1038/Nature04405  0.613
2005 Levy M, Cater SF, Ellington AD. Quantum-dot aptamer beacons for the detection of proteins. Chembiochem : a European Journal of Chemical Biology. 6: 2163-6. PMID 16254932 DOI: 10.1002/Cbic.200500218  0.423
2005 Pai S, Ellington AD, Levy M. Proximity ligation assays with peptide conjugate 'burrs' for the sensitive detection of spores. Nucleic Acids Research. 33: e162. PMID 16237122 DOI: 10.1093/Nar/Gni150  0.481
2005 Levy M, Griswold KE, Ellington AD. Direct selection of trans-acting ligase ribozymes by in vitro compartmentalization. Rna (New York, N.Y.). 11: 1555-62. PMID 16131588 DOI: 10.1261/Rna.2121705  0.516
2005 Cho EJ, Yang L, Levy M, Ellington AD. Using a deoxyribozyme ligase and rolling circle amplification to detect a non-nucleic acid analyte, ATP. Journal of the American Chemical Society. 127: 2022-3. PMID 15713061 DOI: 10.1021/Ja043490U  0.617
2005 Collett JR, Cho EJ, Lee JF, Levy M, Hood AJ, Wan C, Ellington AD. Functional RNA microarrays for high-throughput screening of antiprotein aptamers. Analytical Biochemistry. 338: 113-23. PMID 15707941 DOI: 10.1016/J.Ab.2004.11.027  0.779
2004 Hughes RA, Robertson MP, Ellington AD, Levy M. The importance of prebiotic chemistry in the RNA world. Current Opinion in Chemical Biology. 8: 629-33. PMID 15556407 DOI: 10.1016/J.Cbpa.2004.09.007  0.768
2003 Levy M, Ellington AD. Exponential growth by cross-catalytic cleavage of deoxyribozymogens. Proceedings of the National Academy of Sciences of the United States of America. 100: 6416-21. PMID 12743371 DOI: 10.1073/Pnas.1130145100  0.526
2003 Levy M, Ellington AD. Peptide-templated nucleic acid ligation. Journal of Molecular Evolution. 56: 607-15. PMID 12698297 DOI: 10.1007/S00239-002-2429-7  0.486
2002 Levy M, Ellington AD. ATP-dependent allosteric DNA enzymes. Chemistry & Biology. 9: 417-26. PMID 11983331 DOI: 10.1016/S1074-5521(02)00123-0  0.525
2002 Levy M, Ellington AD. In vitro selection of a deoxyribozyme that can utilize multiple substrates. Journal of Molecular Evolution. 54: 180-90. PMID 11821911 DOI: 10.1007/S00239-001-0066-1  0.517
2001 Sooter LJ, Riedel T, Davidson EA, Levy M, Cox JC, Ellington AD. Toward automated nucleic acid enzyme selection. Biological Chemistry. 382: 1327-34. PMID 11688716 DOI: 10.1515/Bc.2001.165  0.747
2001 Levy M, Ellington AD. Selection of deoxyribozyme ligases that catalyze the formation of an unnatural internucleotide linkage. Bioorganic & Medicinal Chemistry. 9: 2581-7. PMID 11557346 DOI: 10.1016/S0968-0896(01)00033-5  0.502
2001 Levy M, Ellington AD. RNA world: catalysis abets binding, but not vice versa. Current Biology : Cb. 11: R665-7. PMID 11525762 DOI: 10.1016/S0960-9822(01)00388-8  0.545
2001 Nelson KE, Robertson MP, Levy M, Miller SL. Concentration by evaporation and the prebiotic synthesis of cytosine. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 31: 221-9. PMID 11434101 DOI: 10.1023/A:1010652418557  0.508
2001 Levy M, Ellington AD. The descent of polymerization. Nature Structural Biology. 8: 580-2. PMID 11427883 DOI: 10.1038/89601  0.513
2000 Nelson KE, Levy M, Miller SL. Peptide nucleic acids rather than RNA may have been the first genetic molecule. Proceedings of the National Academy of Sciences of the United States of America. 97: 3868-71. PMID 10760258 DOI: 10.1073/Pnas.97.8.3868  0.327
1999 Levy M, Miller SL. The prebiotic synthesis of modified purines and their potential role in the RNA world. Journal of Molecular Evolution. 48: 631-7. PMID 10229566 DOI: 10.1007/Pl00006506  0.341
1996 Robertson MP, Levy M, Miller SL. Prebiotic synthesis of diaminopyrimidine and thiocytosine. Journal of Molecular Evolution. 43: 543-50. PMID 8995051 DOI: 10.1007/Bf02202102  0.526
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