Zhang Zhen - Related publications

New York University, New York, NY, United States 
Cinema, Asian Literature
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Firman T, Huihui J, Clark AR, Ghosh K. Critical Comparison of MaxCal and Other Stochastic Modeling Approaches in Analysis of Gene Networks. Entropy (Basel, Switzerland). 23. PMID 33802879 DOI: 10.3390/e23030357   
2021 Song D, Li JJ. PseudotimeDE: inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data. Genome Biology. 22: 124. PMID 33926517 DOI: 10.1186/s13059-021-02341-y   
2021 Yang Z, Ho YY. Modeling dynamic correlation in zero-inflated bivariate count data with applications to single-cell RNA sequencing data. Biometrics. PMID 33720414 DOI: 10.1111/biom.13457   
2021 Love MI. Statistical Modeling of High Dimensional Counts. Methods in Molecular Biology (Clifton, N.J.). 2284: 97-134. PMID 33835440 DOI: 10.1007/978-1-0716-1307-8_7   
2021 Belyaeva A, Squires C, Uhler C. DCI: Learning Causal Differences between Gene Regulatory Networks. Bioinformatics (Oxford, England). PMID 33704425 DOI: 10.1093/bioinformatics/btab167   
2021 Heerah S, Molinari R, Guerrier S, Marshall-Colon A. Granger-Causal Testing for Irregularly Sampled Time Series with Application to Nitrogen Signaling in Arabidopsis. Bioinformatics (Oxford, England). PMID 33693548 DOI: 10.1093/bioinformatics/btab126   
2021 Zhu J, Yuan Z, Shu L, Liao W, Zhao M, Zhou Y. Selecting Classification Methods for Small Samples of Next-Generation Sequencing Data. Frontiers in Genetics. 12: 642227. PMID 33747051 DOI: 10.3389/fgene.2021.642227   
2021 Mangiola S, Thomas EA, Modrák M, Vehtari A, Papenfuss AT. Probabilistic outlier identification for RNA sequencing generalized linear models. Nar Genomics and Bioinformatics. 3: lqab005. PMID 33709073 DOI: 10.1093/nargab/lqab005   
2021 Ruiz-Perez D, Lugo-Martinez J, Bourguignon N, Mathee K, Lerner B, Bar-Joseph Z, Narasimhan G. Dynamic Bayesian Networks for Integrating Multi-omics Time Series Microbiome Data. Msystems. 6. PMID 33785573 DOI: 10.1128/mSystems.01105-20   
2021 Wu M, Xu J, Ding T, Gao J. Mixed Distribution Models Based on Single-Cell RNA Sequencing Data. Interdisciplinary Sciences, Computational Life Sciences. PMID 33754241 DOI: 10.1007/s12539-021-00427-6   
2021 Katz S, Song J, Webb KP, Lounsbury NW, Bryant CE, Fraser IDC. SIGNAL: A web-based iterative analysis platform integrating pathway and network approaches optimizes hit selection from genome-scale assays. Cell Systems. 12: 338-352.e5. PMID 33894945 DOI: 10.1016/j.cels.2021.03.001   
2021 Long F, Wang L, Cai W, Lesnik K, Liu H. Predicting the performance of anaerobic digestion using machine learning algorithms and genomic data. Water Research. 199: 117182. PMID 33975088 DOI: 10.1016/j.watres.2021.117182   
2021 Karp PD, Midford PE, Caspi R, Khodursky A. Pathway size matters: the influence of pathway granularity on over-representation (enrichment analysis) statistics. Bmc Genomics. 22: 191. PMID 33726670 DOI: 10.1186/s12864-021-07502-8   
2021 Huang Y, Wu J, Na J, Han S, Gao G. Unknown System Dynamics Estimator for Active Vehicle Suspension Control Systems With Time-Varying Delay. Ieee Transactions On Cybernetics. PMID 33961572 DOI: 10.1109/TCYB.2021.3063225   
2021 Nguyen T, Lee S, Quinn T, Truong B, Li X, Tran T, Venkatesh S, Le TD. PAN: Personalized Annotation-based Networks for the Prediction of Breast Cancer Relapse. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33909569 DOI: 10.1109/TCBB.2021.3076422   
2021 Yang Y, Wang X, Zhao X, Huang M, Zhu Q. M3GPSpectra: A novel approach integrating variable selection/construction and MLR modeling for quantitative spectral analysis. Analytica Chimica Acta. 1160: 338453. PMID 33894955 DOI: 10.1016/j.aca.2021.338453   
2021 Barzegar V, Laflamme S, Hu C, Dodson J. Multi-Time Resolution Ensemble LSTMs for Enhanced Feature Extraction in High-Rate Time Series. Sensors (Basel, Switzerland). 21. PMID 33802233 DOI: 10.3390/s21061954   
2021 Yang X, Zhang Z, Li Q, Cai Y. Quantitative structure-activity relationship models for genotoxicity prediction based on combination evaluation strategies for toxicological alternative experiments. Scientific Reports. 11: 8030. PMID 33850191 DOI: 10.1038/s41598-021-87035-y   
2021 Jia B, Liang F, . Fast hybrid Bayesian integrative learning of multiple gene regulatory networks for type 1 diabetes. Biostatistics (Oxford, England). 22: 233-249. PMID 33838043 DOI: 10.1093/biostatistics/kxz027   
2021 Poznanović S, Wood C, Cloer M, Heitsch C. Improving RNA Branching Predictions: Advances and Limitations. Genes. 12. PMID 33805944 DOI: 10.3390/genes12040469   
2021 Zhang C, Lei X, Liu L. Predicting Metabolite-Disease Associations Based on LightGBM Model. Frontiers in Genetics. 12: 660275. PMID 33927752 DOI: 10.3389/fgene.2021.660275   
2021 AbdelAziz AM, Soliman T, Ghany KKA, Sewisy A. A hybrid multi-objective whale optimization algorithm for analyzing microarray data based on Apache Spark. Peerj. Computer Science. 7: e416. PMID 33834101 DOI: 10.7717/peerj-cs.416   
2021 Sekaran TSG, Kedilaya VR, Kumari SN, Shetty P, Gollapalli P. Exploring the differentially expressed genes in human lymphocytes upon response to ionizing radiation: a network biology approach. Radiation Oncology Journal. 39: 48-60. PMID 33794574 DOI: 10.3857/roj.2021.00045   
2021 Ahn H, Jiang H, Li X. Modeling and computation of multistep batch testing for infectious diseases. Biometrical Journal. Biometrische Zeitschrift. PMID 33871898 DOI: 10.1002/bimj.202000240   
2021 Dou L, Zhou W, Zhang L, Xu L, Han K. Accurate identification of RNA D modification using multiple features. Rna Biology. 1-11. PMID 33729104 DOI: 10.1080/15476286.2021.1898160   
2021 Sanyal N, Napolioni V, de Rochemonteix M, Belloy ME, Caporaso NE, Landi MT, Greicius MD, Chatterjee N, Han SS. A Robust Test for Additive Gene-Environment Interaction Under the Trend Effect of Genotype Using an Empirical Bayes-Type Shrinkage Estimator. American Journal of Epidemiology. PMID 33942053 DOI: 10.1093/aje/kwab124   
2021 Yao Y, Zhang S, Liang Y. iORI-ENST: identifying origin of replication sites based on elastic net and stacking learning. Sar and Qsar in Environmental Research. 1-15. PMID 33730950 DOI: 10.1080/1062936X.2021.1895884   
2021 Kong Y, Kozik A, Nakatsu CH, Jones-Hall YL, Chun H. A zero-inflated non-negative matrix factorization for the deconvolution of mixed signals of biological data. The International Journal of Biostatistics. PMID 33783171 DOI: 10.1515/ijb-2020-0039   
2021 Ratner E, Bajcsy A, Fong T, Tomlin CJ, Dragan AD. Efficient Dynamics Estimation with Adaptive Model Sets. Ieee Robotics and Automation Letters. 6: 2373-2380. PMID 33969182 DOI: 10.1109/lra.2021.3060415   
2021 Jiang Y, Zhang K, Wu J, Zhang C, Xue W, Chai T, Lewis FL. H∞-Based Minimal Energy Adaptive Control With Preset Convergence Rate. Ieee Transactions On Cybernetics. PMID 33750726 DOI: 10.1109/TCYB.2021.3061894   
2021 Jiang Y, Zhang K, Wu J, Zhang C, Xue W, Chai T, Lewis FL. H∞-Based Minimal Energy Adaptive Control With Preset Convergence Rate. Ieee Transactions On Cybernetics. PMID 33750726 DOI: 10.1109/TCYB.2021.3061894   
2021 Wang H, Lu W, Chang Z. Simultaneous identification of groundwater contamination source and aquifer parameters with a new weighted-average wavelet variable-threshold denoising method. Environmental Science and Pollution Research International. PMID 33733419 DOI: 10.1007/s11356-021-12959-x   
2021 Ziyatdinov A, Kim J, Prokopenko D, Privé F, Laporte F, Loh PR, Kraft P, Aschard H. Estimating the effective sample size in association studies of quantitative traits. G3 (Bethesda, Md.). PMID 33734375 DOI: 10.1093/g3journal/jkab057   
2021 Gao J, Kang E, He W, Qiao H. Adaptive model-based dynamic event-triggered output feedback control of a robotic manipulator with disturbance. Isa Transactions. PMID 33965203 DOI: 10.1016/j.isatra.2021.04.023   
2021 Visschers JC, Wilson E, Conneely T, Mudrov A, Bougas L. Rapid parameter determination of discrete damped sinusoidal oscillations. Optics Express. 29: 6863-6878. PMID 33726198 DOI: 10.1364/OE.411972   
2021 Song Z, Zhou Y, Feng J, Juusola M. Multiscale 'whole-cell' models to study neural information processing - new insights from fly photoreceptor studies. Journal of Neuroscience Methods. 109156. PMID 33775669 DOI: 10.1016/j.jneumeth.2021.109156   
2021 Kwon C, Park S, Ko S, Ahn J. Increasing prediction accuracy of pathogenic staging by sample augmentation with a GAN. Plos One. 16: e0250458. PMID 33905431 DOI: 10.1371/journal.pone.0250458   
2021 Tozzo V, Azencott CA, Fiorini S, Fava E, Trucco A, Barla A. Where Do We Stand in Regularization for Life Science Studies? Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 33926217 DOI: 10.1089/cmb.2019.0371   
2021 Qian C, Tong M, Yu X, Zhuang S, Gao H. Octopus-Inspired Microgripper for Deformation-Controlled Biological Sample Manipulation. Ieee Transactions On Neural Networks and Learning Systems. PMID 33852400 DOI: 10.1109/TNNLS.2021.3070631   
2021 Jiang L, Haiminen N, Carrieri AP, Huang S, Vã Zquez-Baeza Y, Parida L, Kim HC, Swafford AD, Knight R, Natarajan L. Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data. Biometrics. PMID 33914902 DOI: 10.1111/biom.13481   
2021 Gjerga E, Dugourd A, Tobalina L, Sousa A, Saez-Rodriguez J. PHONEMeS: Efficient Modeling of Signaling Networks Derived from Large-Scale Mass Spectrometry Data. Journal of Proteome Research. PMID 33682416 DOI: 10.1021/acs.jproteome.0c00958   
2021 Alouani DJ, Rajapaksha RRP, Jani M, Rhoads DD, Sadri N. Deep Learning Analysis Improves Specificity of SARS-CoV-2 Real Time PCR. Journal of Clinical Microbiology. PMID 33731417 DOI: 10.1128/JCM.02959-20   
2021 Zhou J, Hoen AG, Mcritchie S, Pathmasiri W, Viles WD, Nguyen QP, Madan JC, Dade E, Karagas MR, Gui J. Information enhanced model selection for Gaussian graphical model with application to metabolomic data. Biostatistics (Oxford, England). PMID 33720330 DOI: 10.1093/biostatistics/kxab006   
2021 Liu Y, Wang T, Zhou B, Zheng D. Robust integration of multiple single-cell RNA sequencing datasets using a single reference space. Nature Biotechnology. PMID 33767393 DOI: 10.1038/s41587-021-00859-x   
2021 Dixit A, Mani A, Bansal R. CoV2-Detect-Net: Design of COVID-19 prediction model based on hybrid DE-PSO with SVM using Chest X-ray images. Information Sciences. PMID 33840820 DOI: 10.1016/j.ins.2021.03.062   
2021 Yoon S, Baik B, Park T, Nam D. Powerful p-value combination methods to detect incomplete association. Scientific Reports. 11: 6980. PMID 33772054 DOI: 10.1038/s41598-021-86465-y   
2021 Hu X, Shen Y, Pedrycz W, Li Y, Wu G. Granular Fuzzy Rule-Based Modeling With Incomplete Data Representation. Ieee Transactions On Cybernetics. PMID 33909582 DOI: 10.1109/TCYB.2021.3071145   
2021 Gelman A, Vákár M. Slamming the sham: A Bayesian model for adaptive adjustment with noisy control data. Statistics in Medicine. PMID 33819927 DOI: 10.1002/sim.8973   
2021 Zhao L, Gao F, Gao S, Liang Y, Long H, Lv Z, Su Y, Ye N, Zhang L, Zhao C, Wang X, Song W, Zhang S, Dong B. Biodiversity-based development and evolution: the emerging research systems in model and non-model organisms. Science China. Life Sciences. PMID 33893979 DOI: 10.1007/s11427-020-1915-y   
2021 Zhang L, Wang Y, Niu M, Wang C, Wang Z. Nonlaboratory-based risk assessment model for type 2 diabetes mellitus screening in Chinese rural population: a joint bagging-boosting model. Ieee Journal of Biomedical and Health Informatics. PMID 33939617 DOI: 10.1109/JBHI.2021.3077114