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David R. Holding - Publications

Affiliations: 
Agronomy The University of Nebraska - Lincoln, Lincoln, NE 
Area:
Agronomy Agriculture, Molecular Biology, Plant Culture Agriculture
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hurst JP, Sato S, Ferris T, Yobi A, Zhou Y, Angelovici R, Clemente TE, Holding DR. Editing the 19 kDa alpha-zein gene family generates non-opaque2-based quality protein maize. Plant Biotechnology Journal. PMID 37988568 DOI: 10.1111/pbi.14237  0.392
2023 Hurst JP, Yobi A, Li A, Sato S, Clemente TE, Angelovici R, Holding DR. Large and stable genome edits at the sorghum alpha kafirin locus result in changes in chromatin accessibility and globally increased expression of genes encoding lysine enrichment. Frontiers in Plant Science. 14: 1116886. PMID 36998682 DOI: 10.3389/fpls.2023.1116886  0.324
2021 Hurst P, Schnable JC, Holding DR. Tandem duplicate expression patterns are conserved between maize haplotypes of the -zein gene family. Plant Direct. 5: e346. PMID 34541444 DOI: 10.1002/pld3.346  0.328
2021 Parsons L, Ren Y, Yobi A, Angelovici R, Rodriguez O, Holding DR. Final Selection of Quality Protein Popcorn Hybrids. Frontiers in Plant Science. 12: 658456. PMID 33841483 DOI: 10.3389/fpls.2021.658456  0.326
2020 Jia S, Yobi A, Naldrett MJ, Alvarez S, Angelovici R, Zhang C, Holding DR. Deletion of maize RDM4 suggests a role in endosperm maturation as well as vegetative and stress-responsive growth. Journal of Experimental Botany. PMID 32667993 DOI: 10.1093/Jxb/Eraa325  0.42
2020 Parsons L, Ren Y, Yobi A, Hurst P, Angelovici R, Rodriguez O, Holding DR. Production and Selection of Quality Protein Popcorn Hybrids Using a Novel Ranking System and Combining Ability Estimates. Frontiers in Plant Science. 11: 698. PMID 32655587 DOI: 10.3389/Fpls.2020.00698  0.453
2019 Liu H, Huang Y, Li X, Wang H, Ding Y, Kang C, Sun M, Li F, Wang J, Deng Y, Yang X, Huang X, Gao X, Yuan L, An D, ... ... Holding DR, et al. High frequency DNA rearrangement at qγ27 creates a novel allele for Quality Protein Maize breeding. Communications Biology. 2: 460. PMID 31925283 DOI: 10.1038/s42003-019-0711-0  0.663
2019 Liu H, Huang Y, Li X, Wang H, Ding Y, Kang C, Sun M, Li F, Wang J, Deng Y, Yang X, Huang X, Gao X, Yuan L, An D, ... ... Holding DR, et al. High frequency DNA rearrangement at creates a novel allele for Quality Protein Maize breeding. Communications Biology. 2: 460. PMID 31840105 DOI: 10.1038/s42003-019-0711-0  0.661
2019 Li S, Jia S, Hou L, Nguyen H, Sato S, Holding D, Cahoon E, Zhang C, Clemente T, Yu B. Mapping of transgenic alleles in soybean using a Nanopore-based sequencing strategy. Journal of Experimental Botany. PMID 31037287 DOI: 10.1093/Jxb/Erz202  0.366
2019 Jia S, Morton K, Zhang C, Holding D. An Exome-seq Based Tool for Mapping and Selection of Candidate Genes in Maize Deletion Mutants. Genomics, Proteomics & Bioinformatics. PMID 30743052 DOI: 10.1016/J.Gpb.2018.02.003  0.479
2018 Ren Y, Yobi A, Marshall L, Angelovici R, Rodriguez O, Holding DR. Generation and Evaluation of Modified Popcorn Suggests a Route to Quality Protein Popcorn. Frontiers in Plant Science. 9: 1803. PMID 30574157 DOI: 10.3389/Fpls.2018.01803  0.471
2018 Li A, Jia S, Yobi A, Ge Z, Sato S, Zhang C, Angelovici R, Clemente TE, Holding DR. Editing of an alpha-kafirin gene family increases digestibility and protein quality in sorghum. Plant Physiology. PMID 29925584 DOI: 10.1104/Pp.18.00200  0.503
2018 Gulati P, Jia S, Li A, Holding DR, Santra D, Rose DJ. In Vitro Pepsin Digestibility of Cooked Proso Millet ( Pancium miliaceum L.) and Related Species from Around the World. Journal of Agricultural and Food Chemistry. PMID 29923404 DOI: 10.1021/Acs.Jafc.8B02315  0.339
2018 Jia S, Li A, Zhang C, Holding D. Deletion Mutagenesis and Identification of Causative Mutations in Maize. Methods in Molecular Biology (Clifton, N.J.). 1676: 97-108. PMID 28986905 DOI: 10.1007/978-1-4939-7315-6_5  0.442
2017 Gelli M, Konda AR, Liu K, Zhang C, Clemente TE, Holding DR, Dweikat IM. Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum. Bmc Plant Biology. 17: 123. PMID 28697783 DOI: 10.1186/S12870-017-1064-9  0.423
2017 Gulati PG, Li A, Holding DR, Santra D, Zhang Y, Rose DJ. Heating Reduces Proso Millet Protein Digestibility via Formation of Hydrophobic Aggregates. Journal of Agricultural and Food Chemistry. PMID 28198183 DOI: 10.1021/Acs.Jafc.6B05574  0.31
2016 Jia S, Li A, Morton K, Avoles-Kianian P, Kianian SF, Zhang C, Holding D. A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize. G3 (Bethesda, Md.). PMID 27261000 DOI: 10.1534/G3.116.030528  0.489
2016 Gelli M, Mitchell SE, Liu K, Clemente TE, Weeks DP, Zhang C, Holding DR, Dweikat IM. Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum. Bmc Plant Biology. 16: 16. PMID 26759170 DOI: 10.1186/S12870-015-0696-X  0.415
2015 Morton KJ, Jia S, Zhang C, Holding DR. Proteomic profiling of maize opaque endosperm mutants reveals selective accumulation of lysine-enriched proteins. Journal of Experimental Botany. PMID 26712829 DOI: 10.1093/Jxb/Erv532  0.49
2015 Dou Y, Guo X, Yuan L, Holding DR, Zhang C. Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization. Biomed Research International. 2015: 789516. PMID 26339642 DOI: 10.1155/2015/789516  0.632
2014 Holding DR. Recent advances in the study of prolamin storage protein organization and function. Frontiers in Plant Science. 5: 276. PMID 24999346 DOI: 10.3389/Fpls.2014.00276  0.534
2014 Gelli M, Duo Y, Konda AR, Zhang C, Holding D, Dweikat I. Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling. Bmc Genomics. 15: 179. PMID 24597475 DOI: 10.1186/1471-2164-15-179  0.408
2014 Yuan L, Dou Y, Kianian SF, Zhang C, Holding DR. Deletion mutagenesis identifies a haploinsufficient role for γ-zein in opaque2 endosperm modification. Plant Physiology. 164: 119-30. PMID 24214534 DOI: 10.1104/Pp.113.230961  0.715
2013 Wu Y, Yuan L, Guo X, Holding DR, Messing J. Mutation in the seed storage protein kafirin creates a high-value food trait in sorghum. Nature Communications. 4: 2217. PMID 23948869 DOI: 10.1038/Ncomms3217  0.67
2013 Guo X, Yuan L, Chen H, Sato SJ, Clemente TE, Holding DR. Nonredundant function of zeins and their correct stoichiometric ratio drive protein body formation in maize endosperm. Plant Physiology. 162: 1359-69. PMID 23677936 DOI: 10.1104/Pp.113.218941  0.666
2012 Guo X, Ronhovde K, Yuan L, Yao B, Soundararajan MP, Elthon T, Zhang C, Holding DR. Pyrophosphate-dependent fructose-6-phosphate 1-phosphotransferase induction and attenuation of Hsp gene expression during endosperm modification in quality protein maize. Plant Physiology. 158: 917-29. PMID 22158678 DOI: 10.1104/Pp.111.191163  0.708
2011 Reyes FC, Chung T, Holding D, Jung R, Vierstra R, Otegui MS. Delivery of prolamins to the protein storage vacuole in maize aleurone cells. The Plant Cell. 23: 769-84. PMID 21343414 DOI: 10.1105/Tpc.110.082156  0.706
2011 Holding DR, Hunter BG, Klingler JP, Wu S, Guo X, Gibbon BC, Wu R, Schulze JM, Jung R, Larkins BA. Characterization of opaque2 modifier QTLs and candidate genes in recombinant inbred lines derived from the K0326Y quality protein maize inbred. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 122: 783-94. PMID 21076810 DOI: 10.1007/S00122-010-1486-3  0.713
2010 Wu Y, Holding DR, Messing J. Gamma-zeins are essential for endosperm modification in quality protein maize. Proceedings of the National Academy of Sciences of the United States of America. 107: 12810-5. PMID 20615951 DOI: 10.1073/Pnas.1004721107  0.532
2010 Holding DR, Meeley RB, Hazebroek J, Selinger D, Gruis F, Jung R, Larkins BA. Identification and characterization of the maize arogenate dehydrogenase gene family. Journal of Experimental Botany. 61: 3663-73. PMID 20558569 DOI: 10.1093/Jxb/Erq179  0.627
2008 Holding DR, Hunter BG, Chung T, Gibbon BC, Ford CF, Bharti AK, Messing J, Hamaker BR, Larkins BA. Genetic analysis of opaque2 modifier loci in quality protein maize. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 117: 157-70. PMID 18427771 DOI: 10.1007/S00122-008-0762-Y  0.724
2007 Holding DR, Otegui MS, Li B, Meeley RB, Dam T, Hunter BG, Jung R, Larkins BA. The maize floury1 gene encodes a novel endoplasmic reticulum protein involved in zein protein body formation. The Plant Cell. 19: 2569-82. PMID 17693529 DOI: 10.1105/Tpc.107.053538  0.637
2007 Settles AM, Holding DR, Tan BC, Latshaw SP, Liu J, Suzuki M, Li L, O'Brien BA, Fajardo DS, Wroclawska E, Tseung CW, Lai J, Hunter CT, Avigne WT, Baier J, et al. Sequence-indexed mutations in maize using the UniformMu transposon-tagging population. Bmc Genomics. 8: 116. PMID 17490480 DOI: 10.1186/1471-2164-8-116  0.584
2004 Lopez-Valenzuela JA, Gibbon BC, Holding DR, Larkins BA. Cytoskeletal proteins are coordinately increased in maize genotypes with high levels of eEF1A. Plant Physiology. 135: 1784-97. PMID 15247373 DOI: 10.1104/Pp.104.042259  0.773
2002 Holding DR, Springer PS. The Arabidopsis gene PROLIFERA is required for proper cytokinesis during seed development. Planta. 214: 373-82. PMID 11855642 DOI: 10.1007/S00425-001-0686-0  0.372
2000 Holding D. The Chloroplast and Leaf Developmental Mutant, pale cress, Exhibits Light-conditional Severity and Symptoms Characteristic of its ABA Deficiency Annals of Botany. 86: 953-962. DOI: 10.1006/Anbo.2000.1263  0.397
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