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Shinya Kuroda - Publications

Affiliations: 
University of Tokyo, Bunkyō-ku, Tōkyō-to, Japan 
Area:
Systems Biology
Website:
http://www.bi.s.u-tokyo.ac.jp/kuroda-lab/index.html
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hoshino D, Kawata K, Kunida K, Hatano A, Yugi K, Wada T, Fujii M, Sano T, Ito Y, Furuichi Y, Manabe Y, Suzuki Y, Fujii NL, Soga T, Kuroda S. Trans-omic Analysis Reveals ROS-Dependent Pentose Phosphate Pathway Activation after High-Frequency Electrical Stimulation in C2C12 Myotubes. Iscience. 23: 101558. PMID 33083727 DOI: 10.1016/j.isci.2020.101558  0.306
2018 Kawata K, Yugi K, Hatano A, Kokaji T, Tomizawa Y, Fujii M, Uda S, Kubota H, Matsumoto M, Nakayama KI, Kuroda S. Reconstruction of global regulatory network from signaling to cellular functions using phosphoproteomic data. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 30417516 DOI: 10.1111/gtc.12655  0.348
2018 Kawata K, Hatano A, Yugi K, Kubota H, Sano T, Fujii M, Tomizawa Y, Kokaji T, Tanaka KY, Uda S, Suzuki Y, Matsumoto M, Nakayama KI, Saitoh K, Kato K, ... ... Kuroda S, et al. Trans-omic Analysis Reveals Selective Responses to Induced and Basal Insulin across Signaling, Transcriptional, and Metabolic Networks. Iscience. 7: 212-229. PMID 30267682 DOI: 10.1016/j.isci.2018.07.022  0.312
2018 Kubota H, Uda S, Matsuzaki F, Yamauchi Y, Kuroda S. In Vivo Decoding Mechanisms of the Temporal Patterns of Blood Insulin by the Insulin-AKT Pathway in the Liver. Cell Systems. PMID 29960883 DOI: 10.1016/j.cels.2018.05.013  0.302
2016 Filippi S, Barnes CP, Kirk PD, Kudo T, Kunida K, McMahon SS, Tsuchiya T, Wada T, Kuroda S, Stumpf MP. Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling. Cell Reports. PMID 27264188 DOI: 10.1016/j.celrep.2016.05.024  0.338
2015 Katsura Y, Kubota H, Kunida K, Kanno A, Kuroda S, Ozawa T. An optogenetic system for interrogating the temporal dynamics of Akt. Scientific Reports. 5: 14589. PMID 26423353 DOI: 10.1038/srep14589  0.326
2014 Yugi K, Kubota H, Toyoshima Y, Noguchi R, Kawata K, Komori Y, Uda S, Kunida K, Tomizawa Y, Funato Y, Miki H, Matsumoto M, Nakayama KI, Kashikura K, Endo K, ... ... Kuroda S, et al. Reconstruction of insulin signal flow from phosphoproteome and metabolome data. Cell Reports. 8: 1171-83. PMID 25131207 DOI: 10.1016/j.celrep.2014.07.021  0.321
2013 Akimoto Y, Yugi K, Uda S, Kudo T, Komori Y, Kubota H, Kuroda S. The extraction of simple relationships in growth factor-specific multiple-input and multiple-output systems in cell-fate decisions by backward elimination PLS regression. Plos One. 8: e72780. PMID 24039801 DOI: 10.1371/journal.pone.0072780  0.318
2013 Saito TH, Uda S, Tsuchiya T, Ozaki Y, Kuroda S. Temporal decoding of MAP kinase and CREB phosphorylation by selective immediate early gene expression. Plos One. 8: e57037. PMID 23469182 DOI: 10.1371/journal.pone.0057037  0.319
2012 Yamamoto Y, Lee D, Kim Y, Lee B, Seo C, Kawasaki H, Kuroda S, Tanaka-Yamamoto K. Raf kinase inhibitory protein is required for cerebellar long-term synaptic depression by mediating PKC-dependent MAPK activation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 14254-64. PMID 23055494 DOI: 10.1523/JNEUROSCI.2812-12.2012  0.337
2012 Kubota H, Noguchi R, Toyoshima Y, Ozaki Y, Uda S, Watanabe K, Ogawa W, Kuroda S. Temporal coding of insulin action through multiplexing of the AKT pathway. Molecular Cell. 46: 820-32. PMID 22633957 DOI: 10.1016/j.molcel.2012.04.018  0.337
2012 Toni T, Ozaki Y, Kirk P, Kuroda S, Stumpf MP. Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection. Molecular Biosystems. 8: 1921-9. PMID 22555461 DOI: 10.1039/c2mb05493k  0.309
2010 Fujita KA, Toyoshima Y, Uda S, Ozaki Y, Kubota H, Kuroda S. Decoupling of receptor and downstream signals in the Akt pathway by its low-pass filter characteristics. Science Signaling. 3: ra56. PMID 20664065 DOI: 10.1126/scisignal.2000810  0.352
2006 Maeda A, Ozaki Y, Sivakumaran S, Akiyama T, Urakubo H, Usami A, Sato M, Kaibuchi K, Kuroda S. Ca2+ -independent phospholipase A2-dependent sustained Rho-kinase activation exhibits all-or-none response. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 11: 1071-83. PMID 16923126 DOI: 10.1111/J.1365-2443.2006.01001.X  0.583
2005 Ozaki Y, Sasagawa S, Kuroda S. Dynamic characteristics of transient responses. Journal of Biochemistry. 137: 659-63. PMID 16002986 DOI: 10.1093/jb/mvi084  0.312
2005 Sasagawa S, Ozaki Y, Fujita K, Kuroda S. Prediction and validation of the distinct dynamics of transient and sustained ERK activation. Nature Cell Biology. 7: 365-73. PMID 15793571 DOI: 10.1038/ncb1233  0.319
2004 Nakaya Y, Kuroda S, Katagiri YT, Kaibuchi K, Takahashi Y. Mesenchymal-epithelial transition during somitic segmentation is regulated by differential roles of Cdc42 and Rac1. Developmental Cell. 7: 425-38. PMID 15363416 DOI: 10.1016/J.Devcel.2004.08.003  0.301
2001 Kuroda S, Schweighofer N, Kawato M. Exploration of signal transduction pathways in cerebellar long-term depression by kinetic simulation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 21: 5693-702. PMID 11466441 DOI: 10.1523/Jneurosci.21-15-05693.2001  0.325
2000 Nakamura N, Oshiro N, Fukata Y, Amano M, Fukata M, Kuroda S, Matsuura Y, Leung T, Lim L, Kaibuchi K. Phosphorylation of ERM proteins at filopodia induced by Cdc42. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 5: 571-81. PMID 10947843 DOI: 10.1046/J.1365-2443.2000.00348.X  0.306
1999 Kaibuchi K, Kuroda S, Fukata M, Nakagawa M. Regulation of cadherin-mediated cell-cell adhesion by the Rho family GTPases. Current Opinion in Cell Biology. 11: 591-6. PMID 10508646 DOI: 10.1016/S0955-0674(99)00014-9  0.322
1999 Kuroda S, Fukata M, Nakagawa M, Kaibuchi K. Cdc42, Rac1, and their effector IQGAP1 as molecular switches for cadherin-mediated cell-cell adhesion. Biochemical and Biophysical Research Communications. 262: 1-6. PMID 10448058 DOI: 10.1006/Bbrc.1999.1122  0.303
1999 Hoshino M, Sone M, Fukata M, Kuroda S, Kaibuchi K, Nabeshima Y, Hama C. Identification of the stef gene that encodes a novel guanine nucleotide exchange factor specific for Rac1. The Journal of Biological Chemistry. 274: 17837-44. PMID 10364228 DOI: 10.1074/Jbc.274.25.17837  0.313
1998 Kobayashi K, Kuroda S, Fukata M, Nakamura T, Nagase T, Nomura N, Matsuura Y, Yoshida-Kubomura N, Iwamatsu A, Kaibuchi K. p140Sra-1 (specifically Rac1-associated protein) is a novel specific target for Rac1 small GTPase. The Journal of Biological Chemistry. 273: 291-5. PMID 9417078 DOI: 10.1074/Jbc.273.1.291  0.302
1997 Kobayashi M, Nagata S, Kita Y, Nakatsu N, Ihara S, Kaibuchi K, Kuroda S, Ui M, Iba H, Konishi H, Kikkawa U, Saitoh I, Fukui Y. Expression of a constitutively active phosphatidylinositol 3-kinase induces process formation in rat PC12 cells. Use of Cre/loxP recombination system. The Journal of Biological Chemistry. 272: 16089-92. PMID 9195902 DOI: 10.1074/Jbc.272.26.16089  0.334
1996 Kuroda S, Fukata M, Kobayashi K, Nakafuku M, Nomura N, Iwamatsu A, Kaibuchi K. Identification of IQGAP as a putative target for the small GTPases, Cdc42 and Rac1 Journal of Biological Chemistry. 271: 23363-23367. PMID 8798539 DOI: 10.1074/Jbc.271.38.23363  0.341
1996 Ohtsuka T, Shimizu K, Yamamori B, Kuroda S, Takai Y. Activation of brain B-Raf protein kinase by Rap1B small GTP-binding protein. The Journal of Biological Chemistry. 271: 1258-61. PMID 8576107 DOI: 10.1074/Jbc.271.3.1258  0.31
1995 Yamamori B, Kuroda S, Shimizu K, Fukui K, Ohtsuka T, Takai Y. Purification of a Ras-dependent mitogen-activated protein kinase kinase kinase from bovine brain cytosol and its identification as a complex of B-Raf and 14-3-3 proteins. The Journal of Biological Chemistry. 270: 11723-6. PMID 7744815 DOI: 10.1074/Jbc.270.20.11723  0.311
1993 Takaishi K, Kikuchi A, Kuroda S, Kotani K, Sasaki T, Takai Y. Involvement of rho p21 and its inhibitory GDP/GTP exchange protein (rho GDI) in cell motility. Molecular and Cellular Biology. 13: 72-9. PMID 8417362 DOI: 10.1128/Mcb.13.1.72  0.301
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