Year |
Citation |
Score |
2020 |
Rubio-Portillo E, Martin-Cuadrado AB, Caraballo-Rodríguez AM, Rohwer F, Dorrestein PC, Antón J. Virulence as a Side Effect of Interspecies Interaction in Coral Pathogens. Mbio. 11. PMID 32694137 DOI: 10.1128/Mbio.00201-20 |
0.352 |
|
2020 |
Roach TNF, Little M, Arts MGI, Huckeba J, Haas AF, George EE, Quinn RA, Cobián-Güemes AG, Naliboff DS, Silveira CB, Vermeij MJA, Kelly LW, Dorrestein PC, Rohwer F. A multiomic analysis of in situ coral-turf algal interactions. Proceedings of the National Academy of Sciences of the United States of America. PMID 32482859 DOI: 10.1073/Pnas.1915455117 |
0.416 |
|
2020 |
French BJ, Lim YW, Zgliczynski BJ, Edwards RA, Rohwer F, Sandin SA. Decoding diversity in a coral reef fish species complex with restricted range using metagenomic sequencing of gut contents. Ecology and Evolution. 10: 3413-3423. PMID 32273998 DOI: 10.1002/Ece3.6138 |
0.356 |
|
2020 |
Boling L, Cuevas DA, Grasis JA, Kang HS, Knowles B, Levi K, Maughan H, McNair K, Rojas MI, Sanchez SE, Smurthwaite C, Rohwer F. Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome. Gut Microbes. 1-14. PMID 31931655 DOI: 10.1080/19490976.2019.1701353 |
0.328 |
|
2019 |
Cobián Güemes AG, Lim YW, Quinn RA, Conrad DJ, Benler S, Maughan H, Edwards R, Brettin T, Cantú VA, Cuevas D, Hamidi R, Dorrestein P, Rohwer F. Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information. Mbio. 10. PMID 30992350 DOI: 10.1128/Mbio.00431-19 |
0.304 |
|
2019 |
Kelly LW, Nelson CE, Haas AF, Naliboff DS, Calhoun S, Carlson CA, Edwards RA, Fox MD, Hatay M, Johnson MD, Kelly ELA, Lim YW, Macherla S, Quinlan ZA, Silva GGZ, ... ... Rohwer F, et al. Diel population and functional synchrony of microbial communities on coral reefs. Nature Communications. 10: 1691. PMID 30979882 DOI: 10.1038/S41467-019-09419-Z |
0.416 |
|
2019 |
Roach TN, Nulton J, Sibani P, Rohwer F, Salamon P. Emergent structure in a stochastic model of ecological evolution Ecological Modelling. 401: 129-133. DOI: 10.1016/J.Ecolmodel.2019.03.004 |
0.301 |
|
2018 |
Benler S, Cobián-Güemes AG, McNair K, Hung SH, Levi K, Edwards R, Rohwer F. A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage. Microbiome. 6: 191. PMID 30352623 DOI: 10.1186/S40168-018-0573-6 |
0.378 |
|
2018 |
Nakajima R, Haas AF, Silveira CB, Kelly EL, Smith JE, Sandin S, Kelly LW, Rohwer F, Nakatomi N, Kurihara H. Release of dissolved and particulate organic matter by the soft coral Lobophytum and subsequent microbial degradation Journal of Experimental Marine Biology and Ecology. 504: 53-60. DOI: 10.1016/J.Jembe.2018.02.008 |
0.329 |
|
2017 |
Garg N, Wang M, Hyde E, da Silva RR, Melnik AV, Protsyuk I, Bouslimani A, Lim YW, Wong R, Humphrey G, Ackermann G, Spivey T, Brouha SS, Bandeira N, Lin GY, ... Rohwer F, et al. Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung. Cell Host & Microbe. PMID 29056429 DOI: 10.1016/J.Chom.2017.10.001 |
0.311 |
|
2017 |
Knowles B, Bailey B, Boling L, Breitbart M, Cobián-Güemes A, Del Campo J, Edwards R, Felts B, Grasis J, Haas AF, Katira P, Kelly LW, Luque A, Nulton J, Paul L, ... ... Rohwer F, et al. Variability and host density independence in inductions-based estimates of environmental lysogeny. Nature Microbiology. 2: 17064. PMID 28452987 DOI: 10.1038/Nmicrobiol.2017.64 |
0.626 |
|
2016 |
Cobián Güemes AG, Youle M, Cantú VA, Felts B, Nulton J, Rohwer F. Viruses as Winners in the Game of Life. Annual Review of Virology. 3: 197-214. PMID 27741409 DOI: 10.1146/Annurev-Virology-100114-054952 |
0.4 |
|
2016 |
Haas AF, Fairoz MF, Kelly LW, Nelson CE, Dinsdale EA, Edwards RA, Giles S, Hatay M, Hisakawa N, Knowles B, Lim YW, Maughan H, Pantos O, Roach TN, Sanchez SE, ... ... Rohwer F, et al. Global microbialization of coral reefs. Nature Microbiology. 1: 16042. PMID 27572833 DOI: 10.1038/Nmicrobiol.2016.42 |
0.406 |
|
2016 |
Bonilla N, Rojas MI, Netto Flores Cruz G, Hung SH, Rohwer F, Barr JJ. Phage on tap-a quick and efficient protocol for the preparation of bacteriophage laboratory stocks. Peerj. 4: e2261. PMID 27547567 DOI: 10.7717/Peerj.2261 |
0.312 |
|
2016 |
McDole Somera T, Bailey B, Barott K, Grasis J, Hatay M, Hilton BJ, Hisakawa N, Nosrat B, Nulton J, Silveira CB, Sullivan C, Brainard RE, Rohwer F. Energetic differences between bacterioplankton trophic groups and coral reef resistance. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27097927 DOI: 10.1098/Rspb.2016.0467 |
0.322 |
|
2016 |
Knowles B, Silveira CB, Bailey BA, Barott K, Cantu VA, Cobián-Güemes AG, Coutinho FH, Dinsdale EA, Felts B, Furby KA, George EE, Green KT, Gregoracci GB, Haas AF, Haggerty JM, ... ... Rohwer F, et al. Lytic to temperate switching of viral communities. Nature. PMID 26982729 DOI: 10.1038/Nature17193 |
0.439 |
|
2016 |
Smith JE, Brainard R, Carter A, Grillo S, Edwards C, Harris J, Lewis L, Obura D, Rohwer F, Sala E, Vroom PS, Sandin S. Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific. Proceedings. Biological Sciences / the Royal Society. 283. PMID 26740615 DOI: 10.1098/Rspb.2015.1985 |
0.388 |
|
2016 |
Baljon AR, Arroyo E, Salamon P, Nulton J, Felts B, Barr J, Rohwer F. Hunting Strategy of Phages that Infect Bacteria Biophysical Journal. 110: 494a. DOI: 10.1016/J.Bpj.2015.11.2642 |
0.307 |
|
2015 |
Hisakawa N, Quistad SD, Hester ER, Martynova D, Maughan H, Sala E, Gavrilo MV, Rohwer F. Metagenomic and satellite analyses of red snow in the Russian Arctic. Peerj. 3: e1491. PMID 26713242 DOI: 10.7717/Peerj.1491 |
0.325 |
|
2015 |
Rohwer F, Segall AM. In retrospect: A century of phage lessons. Nature. 528: 46-8. PMID 26632584 DOI: 10.1038/528046A |
0.315 |
|
2015 |
Barr JJ, Auro R, Sam-Soon N, Kassegne S, Peters G, Bonilla N, Hatay M, Mourtada S, Bailey B, Youle M, Felts B, Baljon A, Nulton J, Salamon P, Rohwer F. Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters. Proceedings of the National Academy of Sciences of the United States of America. 112: 13675-80. PMID 26483471 DOI: 10.1073/Pnas.1508355112 |
0.324 |
|
2015 |
Reyes A, Blanton LV, Cao S, Zhao G, Manary M, Trehan I, Smith MI, Wang D, Virgin HW, Rohwer F, Gordon JI. Gut DNA viromes of Malawian twins discordant for severe acute malnutrition. Proceedings of the National Academy of Sciences of the United States of America. 112: 11941-6. PMID 26351661 DOI: 10.1073/Pnas.1514285112 |
0.375 |
|
2015 |
Roitman S, Flores-Uribe J, Philosof A, Knowles B, Rohwer F, Ignacio-Espinoza JC, Sullivan MB, Cornejo-Castillo FM, Sánchez P, Acinas SG, Dupont CL, Béjà O. Closing the gaps on the viral photosystem-I psaDCAB gene organization. Environmental Microbiology. PMID 26310718 DOI: 10.1111/1462-2920.13036 |
0.322 |
|
2015 |
Sanchez SE, Cuevas DA, Rostron JE, Liang TY, Pivaroff CG, Haynes MR, Nulton J, Felts B, Bailey BA, Salamon P, Edwards RA, Burgin AB, Segall AM, Rohwer F. Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins. Journal of Visualized Experiments : Jove. PMID 26132888 DOI: 10.3791/52854 |
0.4 |
|
2015 |
Haas AF, Rohwer F. Metabolic cascades in marine microbial communities. Proceedings of the National Academy of Sciences of the United States of America. 112: 5552-3. PMID 25918428 DOI: 10.1073/Pnas.1504310112 |
0.301 |
|
2015 |
Garg N, Kapono C, Lim YW, Koyama N, Vermeij MJ, Conrad D, Rohwer F, Dorrestein PC. Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures. International Journal of Mass Spectrometry. 377: 719-717. PMID 25844058 DOI: 10.1016/J.Ijms.2014.06.005 |
0.309 |
|
2015 |
Hevroni G, Enav H, Rohwer F, Béjà O. Diversity of viral photosystem-I psaA genes. The Isme Journal. 9: 1892-8. PMID 25535938 DOI: 10.1038/Ismej.2014.244 |
0.375 |
|
2015 |
Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F. A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. The Isme Journal. 9: 1024-38. PMID 25514533 DOI: 10.1038/Ismej.2014.234 |
0.365 |
|
2014 |
Lim YW, Haynes M, Furlan M, Robertson CE, Harris JK, Rohwer F. Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples. Journal of Visualized Experiments : Jove. PMID 25549184 DOI: 10.3791/52117 |
0.42 |
|
2014 |
Haas AF, Knowles B, Lim YW, McDole Somera T, Kelly LW, Hatay M, Rohwer F. Unraveling the unseen players in the ocean - a field guide to water chemistry and marine microbiology. Journal of Visualized Experiments : Jove. e52131. PMID 25407983 DOI: 10.3791/52131 |
0.437 |
|
2014 |
Grasis JA, Lachnit T, Anton-Erxleben F, Lim YW, Schmieder R, Fraune S, Franzenburg S, Insua S, Machado G, Haynes M, Little M, Kimble R, Rosenstiel P, Rohwer FL, Bosch TC. Species-specific viromes in the ancestral holobiont Hydra. Plos One. 9: e109952. PMID 25343582 DOI: 10.1371/Journal.Pone.0109952 |
0.334 |
|
2014 |
Lim YW, Cuevas DA, Silva GG, Aguinaldo K, Dinsdale EA, Haas AF, Hatay M, Sanchez SE, Wegley-Kelly L, Dutilh BE, Harkins TT, Lee CC, Tom W, Sandin SA, Smith JE, ... ... Rohwer F, et al. Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. Peerj. 2: e520. PMID 25177534 DOI: 10.7717/Peerj.520 |
0.394 |
|
2014 |
Kelly LW, Williams GJ, Barott KL, Carlson CA, Dinsdale EA, Edwards RA, Haas AF, Haynes M, Lim YW, McDole T, Nelson CE, Sala E, Sandin SA, Smith JE, Vermeij MJ, ... ... Rohwer F, et al. Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proceedings of the National Academy of Sciences of the United States of America. 111: 10227-32. PMID 24982156 DOI: 10.1073/Pnas.1403319111 |
0.404 |
|
2014 |
Quinn RA, Lim YW, Maughan H, Conrad D, Rohwer F, Whiteson KL. Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung. Mbio. 5: e00956-13. PMID 24643867 DOI: 10.1128/Mbio.00956-13 |
0.388 |
|
2014 |
Lim YW, Evangelista JS, Schmieder R, Bailey B, Haynes M, Furlan M, Maughan H, Edwards R, Rohwer F, Conrad D. Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis. Journal of Clinical Microbiology. 52: 425-37. PMID 24478471 DOI: 10.1128/Jcm.02204-13 |
0.391 |
|
2014 |
Whiteson KL, Meinardi S, Lim YW, Schmieder R, Maughan H, Quinn R, Blake DR, Conrad D, Rohwer F. Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation. The Isme Journal. 8: 1247-58. PMID 24401860 DOI: 10.1038/Ismej.2013.229 |
0.305 |
|
2014 |
Whiteson K, Lim YW, Quinn R, Meinardi S, Blake D, Conrad D, Rohwer F. Linking genetic potential and active metabolism in cystic fibrosis microbial communities to find biomarkers of disease state F1000research. 5. DOI: 10.7490/F1000Research.1097088.1 |
0.317 |
|
2014 |
Cuevas DA, Garza D, Sanchez SE, Rostron J, Henry CS, Vonstein V, Overbeek RA, Segall A, Rohwer F, Dinsdale EA, Edwards RA. Elucidating genomic gaps using phenotypic profiles F1000research. 3: 210. DOI: 10.12688/F1000Research.5140.1 |
0.325 |
|
2013 |
Reyes A, Wu M, McNulty NP, Rohwer FL, Gordon JI. Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut. Proceedings of the National Academy of Sciences of the United States of America. 110: 20236-41. PMID 24259713 DOI: 10.1073/Pnas.1319470110 |
0.355 |
|
2013 |
Haas AF, Nelson CE, Rohwer F, Wegley-Kelly L, Quistad SD, Carlson CA, Leichter JJ, Hatay M, Smith JE. Influence of coral and algal exudates on microbially mediated reef metabolism. Peerj. 1: e108. PMID 23882445 DOI: 10.7717/Peerj.108 |
0.401 |
|
2013 |
Gregg A, Hatay M, Haas A, Robinett N, Barott K, Vermeij M, Marhaver K, Meirelles P, Thompson F, Rohwer F. Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates. Peerj. 1: e107. PMID 23882444 DOI: 10.7717/Peerj.107 |
0.352 |
|
2013 |
Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, Stotland A, Wolkowicz R, Cutting AS, Doran KS, Salamon P, Youle M, Rohwer F. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proceedings of the National Academy of Sciences of the United States of America. 110: 10771-6. PMID 23690590 DOI: 10.1073/Pnas.1305923110 |
0.343 |
|
2013 |
Marhaver KL, Vermeij MJ, Rohwer F, Sandin SA. Janzen-Connell effects in a broadcast-spawning Caribbean coral: distance-dependent survival of larvae and settlers. Ecology. 94: 146-60. PMID 23600249 DOI: 10.1890/12-0985.1 |
0.315 |
|
2013 |
Mokili JL, Dutilh BE, Lim YW, Schneider BS, Taylor T, Haynes MR, Metzgar D, Myers CA, Blair PJ, Nosrat B, Wolfe ND, Rohwer F. Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness. Plos One. 8: e58404. PMID 23554892 DOI: 10.1371/Journal.Pone.0058404 |
0.311 |
|
2013 |
Frank JA, Lorimer D, Youle M, Witte P, Craig T, Abendroth J, Rohwer F, Edwards RA, Segall AM, Burgin AB. Structure and function of a cyanophage-encoded peptide deformylase. The Isme Journal. 7: 1150-60. PMID 23407310 DOI: 10.1038/Ismej.2013.4 |
0.34 |
|
2013 |
Nelson CE, Goldberg SJ, Wegley Kelly L, Haas AF, Smith JE, Rohwer F, Carlson CA. Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. The Isme Journal. 7: 962-79. PMID 23303369 DOI: 10.1038/Ismej.2012.161 |
0.385 |
|
2013 |
Conrad D, Haynes M, Salamon P, Rainey PB, Youle M, Rohwer F. Cystic fibrosis therapy: a community ecology perspective. American Journal of Respiratory Cell and Molecular Biology. 48: 150-6. PMID 23103995 DOI: 10.1165/Rcmb.2012-0059Ps |
0.398 |
|
2013 |
Lim YW, Schmieder R, Haynes M, Willner D, Furlan M, Youle M, Abbott K, Edwards R, Evangelista J, Conrad D, Rohwer F. Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities. Journal of Cystic Fibrosis : Official Journal of the European Cystic Fibrosis Society. 12: 154-64. PMID 22951208 DOI: 10.1016/J.Jcf.2012.07.009 |
0.386 |
|
2012 |
Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, ... Rohwer F, et al. Oxygen minimum zones harbour novel viral communities with low diversity. Environmental Microbiology. 14: 3043-65. PMID 23039259 DOI: 10.1111/J.1462-2920.2012.02891.X |
0.451 |
|
2012 |
McDole T, Nulton J, Barott KL, Felts B, Hand C, Hatay M, Lee H, Nadon MO, Nosrat B, Salamon P, Bailey B, Sandin SA, Vargas-Angel B, Youle M, Zgliczynski BJ, ... ... Rohwer F, et al. Assessing coral reefs on a Pacific-wide scale using the microbialization score. Plos One. 7: e43233. PMID 22970122 DOI: 10.1371/Journal.Pone.0043233 |
0.38 |
|
2012 |
Reyes A, Semenkovich NP, Whiteson K, Rohwer F, Gordon JI. Going viral: next-generation sequencing applied to phage populations in the human gut. Nature Reviews. Microbiology. 10: 607-17. PMID 22864264 DOI: 10.1038/Nrmicro2853 |
0.418 |
|
2012 |
Youle M, Rohwer F, Stacy A, Whiteley M, Steel BC, Delalez NJ, Nord AL, Berry RM, Armitage JP, Kamoun S, Hogenhout S, Diggle SP, Gurney J, Pollitt EJ, Boetius A, et al. The Microbial Olympics. Nature Reviews. Microbiology. 10: 583-8. PMID 22796885 DOI: 10.1038/Nrmicro2837 |
0.306 |
|
2012 |
Mokili JL, Rohwer F, Dutilh BE. Metagenomics and future perspectives in virus discovery. Current Opinion in Virology. 2: 63-77. PMID 22440968 DOI: 10.1016/J.Coviro.2011.12.004 |
0.409 |
|
2012 |
Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. The Isme Journal. 6: 915-26. PMID 22158393 DOI: 10.1038/Ismej.2011.169 |
0.448 |
|
2012 |
Willner D, Haynes MR, Furlan M, Hanson N, Kirby B, Lim YW, Rainey PB, Schmieder R, Youle M, Conrad D, Rohwer F. Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. American Journal of Respiratory Cell and Molecular Biology. 46: 127-31. PMID 21980056 DOI: 10.1165/Rcmb.2011-0253Oc |
0.334 |
|
2012 |
Kelly LW, Barott KL, Dinsdale E, Friedlander AM, Nosrat B, Obura D, Sala E, Sandin SA, Smith JE, Vermeij MJ, Williams GJ, Willner D, Rohwer F. Black reefs: iron-induced phase shifts on coral reefs. The Isme Journal. 6: 638-49. PMID 21881615 DOI: 10.1038/Ismej.2011.114 |
0.309 |
|
2012 |
Willner D, Haynes MR, Furlan M, Schmieder R, Lim YW, Rainey PB, Rohwer F, Conrad D. Spatial distribution of microbial communities in the cystic fibrosis lung. The Isme Journal. 6: 471-4. PMID 21796216 DOI: 10.1038/Ismej.2011.104 |
0.324 |
|
2012 |
Djamali E, Nulton JD, Turner PJ, Rohwer F, Salamon P. Heat output by marine microbial and viral communities Journal of Non-Equilibrium Thermodynamics. 37. DOI: 10.1515/Jnetdy-2011-0235 |
0.351 |
|
2011 |
Ghai R, Pašić L, Fernández AB, Martin-Cuadrado AB, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, Sánchez-Porro C, Ventosa A, Rodríguez-Valera F. New abundant microbial groups in aquatic hypersaline environments. Scientific Reports. 1: 135. PMID 22355652 DOI: 10.1038/Srep00135 |
0.374 |
|
2011 |
Haas AF, Nelson CE, Wegley Kelly L, Carlson CA, Rohwer F, Leichter JJ, Wyatt A, Smith JE. Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. Plos One. 6: e27973. PMID 22125645 DOI: 10.1371/Journal.Pone.0027973 |
0.355 |
|
2011 |
Ng TF, Willner DL, Lim YW, Schmieder R, Chau B, Nilsson C, Anthony S, Ruan Y, Rohwer F, Breitbart M. Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. Plos One. 6: e20579. PMID 21674005 DOI: 10.1371/Journal.Pone.0020579 |
0.746 |
|
2011 |
Rohwer F, Youle M. Consider something viral in your research Nature Reviews Microbiology. 9: 308-309. PMID 21612126 DOI: 10.1038/Nrmicro2563 |
0.312 |
|
2011 |
Sharon I, Battchikova N, Aro EM, Giglione C, Meinnel T, Glaser F, Pinter RY, Breitbart M, Rohwer F, Béjà O. Comparative metagenomics of microbial traits within oceanic viral communities. The Isme Journal. 5: 1178-90. PMID 21307954 DOI: 10.1038/Ismej.2011.2 |
0.642 |
|
2011 |
Barott KL, Rodriguez-Brito B, Janouškovec J, Marhaver KL, Smith JE, Keeling P, Rohwer FL. Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis. Environmental Microbiology. 13: 1192-204. PMID 21272183 DOI: 10.1111/J.1462-2920.2010.02419.X |
0.302 |
|
2011 |
Alperovitch-Lavy A, Sharon I, Rohwer F, Aro EM, Glaser F, Milo R, Nelson N, Béjà O. Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets. Environmental Microbiology. 13: 24-32. PMID 20649642 DOI: 10.1111/J.1462-2920.2010.02304.X |
0.335 |
|
2011 |
Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP, Rohwer F, Haynes M. Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America. 108: 4547-53. PMID 20547834 DOI: 10.1073/Pnas.1000089107 |
0.452 |
|
2010 |
Reyes A, Haynes M, Hanson N, Angly FE, Heath AC, Rohwer F, Gordon JI. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature. 466: 334-8. PMID 20631792 DOI: 10.1038/Nature09199 |
0.468 |
|
2010 |
Schmieder R, Lim YW, Rohwer F, Edwards R. TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets. Bmc Bioinformatics. 11: 341. PMID 20573248 DOI: 10.1186/1471-2105-11-341 |
0.34 |
|
2010 |
Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, Felts B, Haynes M, Liu H, Lipson D, Mahaffy J, ... ... Rohwer F, et al. Viral and microbial community dynamics in four aquatic environments. The Isme Journal. 4: 739-51. PMID 20147985 DOI: 10.1038/Ismej.2010.1 |
0.645 |
|
2010 |
Ng T, Willner D, Nilsson C, Lim Y, Schmieder R, Chau B, Ruan Y, Rohwer F, Breitbart M. Vector-based metagenomics for animal virus surveillance International Journal of Infectious Diseases. 14: e378. DOI: 10.1016/J.Ijid.2010.02.461 |
0.689 |
|
2009 |
Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, ... ... Rohwer F, et al. The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. Plos Computational Biology. 5: e1000593. PMID 20011103 DOI: 10.1371/Journal.Pcbi.1000593 |
0.454 |
|
2009 |
Pasić L, Rodriguez-Mueller B, Martin-Cuadrado AB, Mira A, Rohwer F, Rodriguez-Valera F. Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber. Bmc Genomics. 10: 570. PMID 19951421 DOI: 10.1186/1471-2164-10-570 |
0.371 |
|
2009 |
Rohwer F, Prangishvili D, Lindell D. Roles of viruses in the environment. Environmental Microbiology. 11: 2771-4. PMID 19878268 DOI: 10.1111/J.1462-2920.2009.02101.X |
0.308 |
|
2009 |
Rodriguez-Valera F, Martin-Cuadrado AB, Rodriguez-Brito B, Pasić L, Thingstad TF, Rohwer F, Mira A. Explaining microbial population genomics through phage predation. Nature Reviews. Microbiology. 7: 828-36. PMID 19834481 DOI: 10.1038/Npre.2009.3489.1 |
0.375 |
|
2009 |
Willner D, Furlan M, Haynes M, Schmieder R, Angly FE, Silva J, Tammadoni S, Nosrat B, Conrad D, Rohwer F. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. Plos One. 4: e7370. PMID 19816605 DOI: 10.1371/Journal.Pone.0007370 |
0.41 |
|
2009 |
Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI, Nelson N, Béjà O. Photosystem I gene cassettes are present in marine virus genomes. Nature. 461: 258-62. PMID 19710652 DOI: 10.1038/Nature08284 |
0.394 |
|
2009 |
Angly F, Youle M, Nosrat B, Srinagesh S, Rodriguez-Brito B, McNairnie P, Deyanat-Yazdi G, Breitbart M, Rohwer F. Genomic analysis of multiple Roseophage SIO1 strains. Environmental Microbiology. 11: 2863-73. PMID 19659499 DOI: 10.1111/J.1462-2920.2009.02021.X |
0.615 |
|
2009 |
Rohwer F, Thurber RV. Viruses manipulate the marine environment. Nature. 459: 207-12. PMID 19444207 DOI: 10.1038/Nature08060 |
0.386 |
|
2009 |
Thurber RV, Willner-Hall D, Rodriguez-Mueller B, Desnues C, Edwards RA, Angly F, Dinsdale E, Kelly L, Rohwer F. Metagenomic analysis of stressed coral holobionts Environmental Microbiology. 11: 2148-2163. PMID 19397678 DOI: 10.1111/J.1462-2920.2009.01935.X |
0.403 |
|
2009 |
Willner D, Thurber RV, Rohwer F. Metagenomic signatures of 86 microbial and viral metagenomes. Environmental Microbiology. 11: 1752-66. PMID 19302541 DOI: 10.1111/J.1462-2920.2009.01901.X |
0.452 |
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2009 |
Thurber RV, Haynes M, Breitbart M, Wegley L, Rohwer F. Laboratory procedures to generate viral metagenomes. Nature Protocols. 4: 470-83. PMID 19300441 DOI: 10.1038/Nprot.2009.10 |
0.602 |
|
2009 |
Breitbart M, Hoare A, Nitti A, Siefert J, Haynes M, Dinsdale E, Edwards R, Souza V, Rohwer F, Hollander D. Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico. Environmental Microbiology. 11: 16-34. PMID 18764874 DOI: 10.1111/J.1462-2920.2008.01725.X |
0.642 |
|
2009 |
Smarr L, Gilna P, Papadopoulos P, DeFanti TA, Hidley G, Wooley J, Virginia Armbrust E, Rohwer F, Frost E. Building an OptIPlanet collaboratory to support microbial metagenomics Future Generation Computer Systems. 25: 124-131. DOI: 10.1016/J.Future.2008.06.009 |
0.36 |
|
2008 |
Vega Thurber RL, Barott KL, Hall D, Liu H, Rodriguez-Mueller B, Desnues C, Edwards RA, Haynes M, Angly FE, Wegley L, Rohwer FL. Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proceedings of the National Academy of Sciences of the United States of America. 105: 18413-8. PMID 19017800 DOI: 10.1073/Pnas.0808985105 |
0.303 |
|
2008 |
McDaniel L, Breitbart M, Mobberley J, Long A, Haynes M, Rohwer F, Paul JH. Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression. Plos One. 3: e3263. PMID 18810270 DOI: 10.1371/Journal.Pone.0003263 |
0.608 |
|
2008 |
Breitbart M, Haynes M, Kelley S, Angly F, Edwards RA, Felts B, Mahaffy JM, Mueller J, Nulton J, Rayhawk S, Rodriguez-Brito B, Salamon P, Rohwer F. Viral diversity and dynamics in an infant gut. Research in Microbiology. 159: 367-73. PMID 18541415 DOI: 10.1016/J.Resmic.2008.04.006 |
0.625 |
|
2008 |
Marhaver KL, Edwards RA, Rohwer F. Viral communities associated with healthy and bleaching corals Environmental Microbiology. 10: 2277-2286. PMID 18479440 DOI: 10.1111/J.1462-2920.2008.01652.X |
0.474 |
|
2008 |
Tringe SG, Zhang T, Liu X, Yu Y, Lee WH, Yap J, Yao F, Suan ST, Ing SK, Haynes M, Rohwer F, Wei CL, Tan P, Bristow J, Rubin EM, et al. The airborne metagenome in an indoor urban environment. Plos One. 3: e1862. PMID 18382653 DOI: 10.1371/Journal.Pone.0001862 |
0.37 |
|
2008 |
Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, ... ... Rohwer F, et al. Functional metagenomic profiling of nine biomes. Nature. 452: 629-32. PMID 18337718 DOI: 10.1038/Nature06810 |
0.621 |
|
2008 |
Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, Liu H, Furlan M, Wegley L, Chau B, Ruan Y, Hall D, Angly FE, Edwards RA, Li L, ... ... Rohwer F, et al. Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature. 452: 340-3. PMID 18311127 DOI: 10.1038/Nature06735 |
0.671 |
|
2008 |
Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly F, Wegley L, Hatay M, Hall D, Brown E, Haynes M, Krause L, Sala E, Sandin SA, Thurber RV, Willis BL, ... ... Rohwer F, et al. Microbial ecology of four coral atolls in the Northern Line Islands. Plos One. 3: e1584. PMID 18301735 DOI: 10.1371/Journal.Pone.0001584 |
0.436 |
|
2008 |
Sandin SA, Smith JE, Demartini EE, Dinsdale EA, Donner SD, Friedlander AM, Konotchick T, Malay M, Maragos JE, Obura D, Pantos O, Paulay G, Richie M, Rohwer F, Schroeder RE, et al. Baselines and degradation of coral reefs in the Northern Line Islands. Plos One. 3: e1548. PMID 18301734 DOI: 10.1371/Journal.Pone.0001548 |
0.32 |
|
2008 |
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J. Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research. 36: 2230-9. PMID 18285365 DOI: 10.1093/Nar/Gkn038 |
0.382 |
|
2008 |
Kunin V, He S, Warnecke F, Peterson SB, Garcia Martin H, Haynes M, Ivanova N, Blackall LL, Breitbart M, Rohwer F, McMahon KD, Hugenholtz P. A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Research. 18: 293-7. PMID 18077539 DOI: 10.1101/Gr.6835308 |
0.631 |
|
2008 |
Wegley L, Edwards R, Rodriguez-Brito B, Liu H, Rohwer F. Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environmental Microbiology. 9: 2707-19. PMID 17922755 DOI: 10.1111/J.1462-2920.2007.01383.X |
0.461 |
|
2008 |
Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, ... ... Rohwer F, et al. Functional metagenomic profiling of nine biomes (Nature (2008) 452, (629-632 )) Nature. 455: 830. DOI: 10.1038/Nature07346 |
0.545 |
|
2008 |
Breitbart M, Middelboe M, Rohwer F. Marine Viruses: Community Dynamics, Diversity and Impact on Microbial Processes Microbial Ecology of the Oceans: Second Edition. 443-479. DOI: 10.1002/9780470281840.ch12 |
0.58 |
|
2007 |
Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, Jones R, Robeson M, Edwards RA, Felts B, Rayhawk S, Knight R, Rohwer F, Jackson RB. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Applied and Environmental Microbiology. 73: 7059-66. PMID 17827313 DOI: 10.1128/Aem.00358-07 |
0.61 |
|
2007 |
Beman JM, Roberts KJ, Wegley L, Rohwer F, Francis CA. Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals. Applied and Environmental Microbiology. 73: 5642-7. PMID 17586663 DOI: 10.1128/Aem.00461-07 |
0.427 |
|
2007 |
Hoffmann KH, Rodriguez-Brito B, Breitbart M, Bangor D, Angly F, Felts B, Nulton J, Rohwer F, Salamon P. Power law rank-abundance models for marine phage communities. Fems Microbiology Letters. 273: 224-8. PMID 17559407 DOI: 10.1111/J.1574-6968.2007.00790.X |
0.566 |
|
2007 |
Johnston IS, Rohwer F. Microbial landscapes on the outer tissue surfaces of the reef-building coral Porites compressa Coral Reefs. 26: 375-383. DOI: 10.1007/S00338-007-0208-Z |
0.316 |
|
2006 |
Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, ... ... Rohwer F, et al. The marine viromes of four oceanic regions. Plos Biology. 4: e368. PMID 17090214 DOI: 10.1371/Journal.Pbio.0040368 |
0.63 |
|
2006 |
Krause L, Diaz NN, Bartels D, Edwards RA, Pühler A, Rohwer F, Meyer F, Stoye J. Finding novel genes in bacterial communities isolated from the environment. Bioinformatics (Oxford, England). 22: e281-9. PMID 16873483 DOI: 10.1093/Bioinformatics/Btl247 |
0.383 |
|
2006 |
Casas V, Miyake J, Balsley H, Roark J, Telles S, Leeds S, Zurita I, Breitbart M, Bartlett D, Azam F, Rohwer F. Widespread occurrence of phage-encoded exotoxin genes in terrestrial and aquatic environments in Southern California. Fems Microbiology Letters. 261: 141-9. PMID 16842371 DOI: 10.1111/J.1574-6968.2006.00345.X |
0.593 |
|
2006 |
Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC, Rohwer F. Using pyrosequencing to shed light on deep mine microbial ecology. Bmc Genomics. 7: 57. PMID 16549033 DOI: 10.1186/1471-2164-7-57 |
0.599 |
|
2006 |
Rodriguez-Brito B, Rohwer F, Edwards RA. An application of statistics to comparative metagenomics. Bmc Bioinformatics. 7: 162. PMID 16549025 DOI: 10.1186/1471-2105-7-162 |
0.437 |
|
2006 |
Yu Y, Breitbart M, McNairnie P, Rohwer F. FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries. Bmc Bioinformatics. 7: 57. PMID 16464253 DOI: 10.1186/1471-2105-7-57 |
0.584 |
|
2006 |
Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, Soh SW, Hibberd ML, Liu ET, Rohwer F, Ruan Y. RNA viral community in human feces: prevalence of plant pathogenic viruses. Plos Biology. 4: e3. PMID 16336043 DOI: 10.1371/Journal.Pbio.0040003 |
0.604 |
|
2006 |
Kline DI, Kuntz NM, Breitbart M, Knowlton N, Rohwer F. Role of elevated organic carbon levels and microbial activity in coral mortality Marine Ecology Progress Series. 314: 119-125. DOI: 10.3354/Meps314119 |
0.544 |
|
2005 |
Breitbart M, Rohwer F. Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Biotechniques. 39: 729-36. PMID 16312220 DOI: 10.2144/000112019 |
0.592 |
|
2005 |
Breitbart M, Rohwer F. Here a virus, there a virus, everywhere the same virus? Trends in Microbiology. 13: 278-84. PMID 15936660 DOI: 10.1016/J.Tim.2005.04.003 |
0.58 |
|
2005 |
Edwards RA, Rohwer F. Viral metagenomics. Nature Reviews. Microbiology. 3: 504-10. PMID 15886693 DOI: 10.1038/nrmicro1163 |
0.379 |
|
2005 |
Purdy A, Rohwer F, Edwards R, Azam F, Bartlett DH. A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains. Journal of Bacteriology. 187: 2992-3001. PMID 15838025 DOI: 10.1128/Jb.187.9.2992-3001.2005 |
0.365 |
|
2005 |
Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. Plos Biology. 3: e144. PMID 15828858 DOI: 10.1371/Journal.Pbio.0030144 |
0.387 |
|
2005 |
Angly F, Rodriguez-Brito B, Bangor D, McNairnie P, Breitbart M, Salamon P, Felts B, Nulton J, Mahaffy J, Rohwer F. PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. Bmc Bioinformatics. 6: 41. PMID 15743531 DOI: 10.1186/1471-2105-6-41 |
0.66 |
|
2005 |
Adhya S, Black L, Friedman D, Hatfull G, Kreuzer K, Merril C, Oppenheim A, Rohwer F, Young R. 2004 ASM Conference on the New Phage Biology: the 'Phage Summit'. Molecular Microbiology. 55: 1300-14. PMID 15720541 DOI: 10.1111/J.1365-2958.2005.04509.X |
0.312 |
|
2005 |
Breitbart M, Bhagooli R, Griffin S, Johnston I, Rohwer F. Microbial communities associated with skeletal tumors on Porites compressa. Fems Microbiology Letters. 243: 431-6. PMID 15686846 DOI: 10.1016/J.Femsle.2005.01.004 |
0.566 |
|
2004 |
Casas V, Kline DI, Wegley L, Yu Y, Breitbart M, Rohwer F. Widespread association of a Rickettsiales-like bacterium with reef-building corals. Environmental Microbiology. 6: 1137-48. PMID 15479247 DOI: 10.1111/J.1462-2920.2004.00647.X |
0.606 |
|
2004 |
Sano E, Carlson S, Wegley L, Rohwer F. Movement of viruses between biomes. Applied and Environmental Microbiology. 70: 5842-6. PMID 15466522 DOI: 10.1128/Aem.70.10.5842-5846.2004 |
0.368 |
|
2004 |
Lindell D, Sullivan MB, Johnson ZI, Tolonen AC, Rohwer F, Chisholm SW. Transfer of photosynthesis genes to and from Prochlorococcus viruses. Proceedings of the National Academy of Sciences of the United States of America. 101: 11013-8. PMID 15256601 DOI: 10.1073/Pnas.0401526101 |
0.348 |
|
2004 |
Breitbart M, Miyake JH, Rohwer F. Global distribution of nearly identical phage-encoded DNA sequences. Fems Microbiology Letters. 236: 249-56. PMID 15251204 DOI: 10.1111/J.1574-6968.2004.Tb09654.X |
0.643 |
|
2004 |
Breitbart M, Felts B, Kelley S, Mahaffy JM, Nulton J, Salamon P, Rohwer F. Diversity and population structure of a near-shore marine-sediment viral community. Proceedings. Biological Sciences / the Royal Society. 271: 565-74. PMID 15156913 DOI: 10.1098/Rspb.2003.2628 |
0.664 |
|
2004 |
Breitbart M, Wegley L, Leeds S, Schoenfeld T, Rohwer F. Phage community dynamics in hot springs. Applied and Environmental Microbiology. 70: 1633-40. PMID 15006788 DOI: 10.1128/Aem.70.3.1633-1640.2004 |
0.63 |
|
2004 |
Wegley L, Yu Y, Breitbart M, Casas V, Kline DI, Rohwer F. Coral-associated Archaea Marine Ecology Progress Series. 273: 89-96. DOI: 10.3354/Meps273089 |
0.606 |
|
2003 |
Mosier-Boss PA, Lieberman SH, Andrews JM, Rohwer FL, Wegley LE, Breitbart M. Use of fluorescently labeled phage in the detection and identification of bacterial species. Applied Spectroscopy. 57: 1138-44. PMID 14611044 DOI: 10.1366/00037020360696008 |
0.585 |
|
2003 |
Knowlton N, Rohwer F. Multispecies microbial mutualisms on coral reefs: the host as a habitat. The American Naturalist. 162: S51-62. PMID 14583857 DOI: 10.1086/378684 |
0.366 |
|
2003 |
Seguritan V, Feng IW, Rohwer F, Swift M, Segall AM. Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C. Journal of Bacteriology. 185: 6434-47. PMID 14563879 DOI: 10.1128/Jb.185.21.6434-6447.2003 |
0.39 |
|
2003 |
Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, Salamon P, Rohwer F. Metagenomic analyses of an uncultured viral community from human feces. Journal of Bacteriology. 185: 6220-3. PMID 14526037 DOI: 10.1128/Jb.185.20.6220-6223.2003 |
0.646 |
|
2003 |
Rohwer F. Global Phage Diversity Cell. 113: 141-141. PMID 12705861 DOI: 10.1016/S0092-8674(03)00276-9 |
0.348 |
|
2003 |
Fung MM, Rohwer F, McGuire KL. IL-2 activation of a PI3K-dependent STAT3 serine phosphorylation pathway in primary human T cells. Cellular Signalling. 15: 625-36. PMID 12681450 DOI: 10.1016/S0898-6568(03)00003-2 |
0.574 |
|
2002 |
Paul JH, Sullivan MB, Segall AM, Rohwer F. Marine phage genomics. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. 133: 463-76. PMID 12470812 DOI: 10.1016/S1096-4959(02)00168-9 |
0.445 |
|
2002 |
Breitbart M, Salamon P, Andresen B, Mahaffy JM, Segall AM, Mead D, Azam F, Rohwer F. Genomic analysis of uncultured marine viral communities. Proceedings of the National Academy of Sciences of the United States of America. 99: 14250-5. PMID 12384570 DOI: 10.1073/Pnas.202488399 |
0.669 |
|
2002 |
Rohwer F, Edwards R. The Phage Proteomic Tree: a genome-based taxonomy for phage. Journal of Bacteriology. 184: 4529-35. PMID 12142423 DOI: 10.1128/Jb.184.16.4529-4535.2002 |
0.394 |
|
2002 |
Hagström Å, Pommier T, Rohwer F, Simu K, Stolte W, Svensson D, Zweifel UL. Use of 16S Ribosomal DNA for Delineation of Marine Bacterioplankton Species Applied and Environmental Microbiology. 68: 3628-3633. PMID 12089052 DOI: 10.1128/Aem.68.7.3628-3633.2002 |
0.389 |
|
2002 |
Rohwer F, Seguritan V, Azam F, Knowlton N. Diversity and distribution of coral-associated bacteria Marine Ecology Progress Series. 243: 1-10. DOI: 10.3354/Meps243001 |
0.44 |
|
2001 |
Seguritan V, Rohwer F. FastGroup: a program to dereplicate libraries of 16S rDNA sequences. Bmc Bioinformatics. 2: 9. PMID 11707150 DOI: 10.1186/1471-2105-2-9 |
0.331 |
|
2001 |
Rohwer F, Seguritan V, Choi DH, Segall AM, Azam F. Production of shotgun libraries using random amplification Biotechniques. 31: 108-118. PMID 11464504 DOI: 10.2144/01311Rr02 |
0.346 |
|
2001 |
Rohwer F, Breitbart M, Jara J, Azam F, Knowlton N. Diversity of bacteria associated with the Caribbean coral Montastraea franksi Coral Reefs. 20: 85-91. DOI: 10.1007/S003380100138 |
0.55 |
|
2000 |
Rohwer F, Segall A, Steward G, Seguritan V, Breitbart M, Wolven F, Farooq Azam F. The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages Limnology and Oceanography. 45: 408-418. DOI: 10.4319/Lo.2000.45.2.0408 |
0.612 |
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