Lotus A. Lofgren, PhD - Publications

Affiliations: 
Biology Duke University, Durham, NC 
Area:
mechanistic fungal ecology, genomics, bioinformatics

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lofgren L, Nguyen NH, Kennedy P, Pérez-Pazos E, Fletcher J, Liao HL, Wang H, Zhang K, Ruytinx J, Smith AH, Ke YH, Cotter HVT, Engwall E, Hameed KM, Vilgalys R, et al. Suillus: an emerging model for the study of ectomycorrhizal ecology and evolution. The New Phytologist. PMID 38581203 DOI: 10.1111/nph.19700  0.608
2024 Mudbhari S, Lofgren L, Appidi MR, Vilgalys R, Hettich RL, Abraham PE. Decoding the chemical language of fungi: genome mining and untargeted metabolomics uncover terpene chemical diversity. Msystems. e0122523. PMID 38470040 DOI: 10.1128/msystems.01225-23  0.61
2023 Mudbhari S, Lofgren L, Appidi MR, Vilgalys R, Hettich RL, Abraham P. Decoding the chemical language of fungi: genome mining and untargeted metabolomics uncover terpene chemical diversity. Biorxiv : the Preprint Server For Biology. PMID 38045323 DOI: 10.1101/2023.11.20.567897  0.604
2022 Lofgren LA, Ross BS, Cramer RA, Stajich JE. The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven by recombination. Plos Biology. 20: e3001890. PMID 36395320 DOI: 10.1371/journal.pbio.3001890  0.574
2022 Lofgren LA, Lorch JM, Cramer RA, Blehert DS, Berlowski-Zier BM, Winzeler ME, Gutierrez-Perez C, Kordana NE, Stajich JE. Avian-associated Aspergillus fumigatus displays broad phylogenetic distribution, no evidence for host specificity, and multiple genotypes within epizootic events. G3 (Bethesda, Md.). PMID 35377435 DOI: 10.1093/g3journal/jkac075  0.545
2021 Kirkland ME, Stannard M, Kowalski CH, Mould D, Caffrey-Carr A, Temple RM, Ross BS, Lofgren LA, Stajich JE, Cramer RA, Obar JJ. Host Lung Environment Limits Aspergillus fumigatus Germination through an SskA-Dependent Signaling Response. Msphere. 6: e0092221. PMID 34878292 DOI: 10.1128/msphere.00922-21  0.487
2021 Erlandson SR, Margis R, Ramirez A, Nguyen N, Lofgren L, Liao HL, Vilgalys R, Kennedy PG, Peay KG. Transcriptional acclimation and spatial differentiation characterize drought response by the ectomycorrhizal fungus Suillus pungens. The New Phytologist. PMID 34668199 DOI: 10.1111/nph.17816  0.566
2021 Lofgren LA, Stajich JE. Fungal biodiversity and conservation mycology in light of new technology, big data, and changing attitudes. Current Biology : Cb. 31: R1312-R1325. PMID 34637742 DOI: 10.1016/j.cub.2021.06.083  0.576
2021 Ross BS, Lofgren LA, Ashare A, Stajich JE, Cramer RA. Aspergillus fumigatus In-Host HOG Pathway Mutation for Cystic Fibrosis Lung Microenvironment Persistence. Mbio. 12: e0215321. PMID 34465017 DOI: 10.1128/mBio.02153-21  0.469
2021 Jones JT, Liu KW, Wang X, Kowalski CH, Ross BS, Mills KAM, Kerkaert JD, Hohl TM, Lofgren LA, Stajich JE, Obar JJ, Cramer RA. Aspergillus fumigatus Strain-Specific Conidia Lung Persistence Causes an Allergic Broncho-Pulmonary Aspergillosis-Like Disease Phenotype. Msphere. 6. PMID 33597172 DOI: 10.1128/mSphere.01250-20  0.463
2020 Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, et al. Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi. The New Phytologist. PMID 33355923 DOI: 10.1111/nph.17160  0.677
2020 Kennedy PG, Gagne J, Perez-Pazos E, Lofgren LA, Nguyen NH. Does fungal competitive ability explain host specificity or rarity in ectomycorrhizal symbioses? Plos One. 15: e0234099. PMID 32810132 DOI: 10.1371/Journal.Pone.0234099  0.54
2018 Lofgren LA, Uehling JK, Branco S, Bruns TD, Martin F, Kennedy PG. Genome-based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles. Molecular Ecology. PMID 30582650 DOI: 10.1111/Mec.14995  0.646
2018 Lofgren L, Nguyen NH, Kennedy PG. Ectomycorrhizal host specificity in a changing world: can legacy effects explain anomalous current associations? The New Phytologist. PMID 29411381 DOI: 10.1111/Nph.15008  0.594
2018 Lofgren L, Riddle J, Dong Y, Kuhnem PR, Cummings JA, Ponte EMD, Bergstrom GC, Kistler HC. A high proportion of NX-2 genotype strains are found among Fusarium graminearum isolates from northeastern New York State European Journal of Plant Pathology. 150: 791-796. DOI: 10.1007/S10658-017-1314-6  0.35
2017 Lofgren LA, LeBlanc NR, Certano AK, Nachtigall J, LaBine KM, Riddle J, Broz K, Dong Y, Bethan B, Kafer CW, Kistler HC. Fusarium graminearum: pathogen or endophyte of North American grasses? The New Phytologist. PMID 29160900 DOI: 10.1111/Nph.14894  0.433
2015 Liang J, Lofgren L, Ma Z, Ward T, Kistler HC. Population subdivision of Fusarium graminearum from barley and wheat in the upper Midwestern United States at the turn of the century. Phytopathology. PMID 26107972 DOI: 10.1094/Phyto-01-15-0021-R  0.309
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