Ram Prasad Bora, PhD - Publications

Affiliations: 
2008-2010 Chemistry University of Southern California, Los Angeles, CA, United States 
Area:
Computer simulations (Free energy) based virtual screening, docking, and structure based drug design
Website:
https://sites.google.com/site/ramcompbiochem/home

11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Jindal G, Ramachandran B, Bora RP, Warshel A. Exploring the Development of Ground-State Destabilization and Transition-State Stabilization in Two Directed Evolution Paths of Kemp Eliminases. Acs Catalysis. 7: 3301-3305. PMID 29082065 DOI: 10.1021/Acscatal.7B00171  0.327
2016 Paul TJ, Barman A, Ozbil M, Bora RP, Zhang T, Sharma G, Hoffmann Z, Prabhakar R. Mechanisms of peptide hydrolysis by aspartyl and metalloproteases. Physical Chemistry Chemical Physics : Pccp. 18: 24790-24801. PMID 27711373 DOI: 10.1039/C6Cp02097F  0.363
2016 Warshel A, Bora RP. Perspective: Defining and quantifying the role of dynamics in enzyme catalysis. The Journal of Chemical Physics. 144: 180901. PMID 27179464 DOI: 10.1063/1.4947037  0.376
2015 Mukherjee S, Bora RP, Warshel A. Torque, chemistry and efficiency in molecular motors: a study of the rotary-chemical coupling in F1-ATPase. Quarterly Reviews of Biophysics. 48: 395-403. PMID 26537397 DOI: 10.1017/S0033583515000050  0.307
2015 Bora RP, Mills MJ, Frushicheva MP, Warshel A. On the challenge of exploring the evolutionary trajectory from phosphotriesterase to arylesterase using computer simulations. The Journal of Physical Chemistry. B. 119: 3434-45. PMID 25620270 DOI: 10.1021/Jp5124025  0.417
2015 Zhang T, Ozbil M, Barman A, Paul TJ, Bora RP, Prabhakar R. Theoretical insights into the functioning of metallopeptidases and their synthetic analogues. Accounts of Chemical Research. 48: 192-200. PMID 25607542 DOI: 10.1021/Ar500301Y  0.363
2015 Lameira J, Bora RP, Chu ZT, Warshel A. Methyltransferases do not work by compression, cratic, or desolvation effects, but by electrostatic preorganization. Proteins. 83: 318-30. PMID 25388538 DOI: 10.1002/Prot.24717  0.366
2015 Bora RP. Ribosome Assisted GTP Hydrolysis by EF-Tu - Mechanism and the Role of Asp21 Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.2142  0.327
2013 Rychkova A, Mukherjee S, Bora RP, Warshel A. Simulating the pulling of stalled elongated peptide from the ribosome by the translocon. Proceedings of the National Academy of Sciences of the United States of America. 110: 10195-200. PMID 23729811 DOI: 10.1016/J.Bpj.2013.11.2749  0.304
2012 Ozbil M, Barman A, Bora RP, Prabhakar R. Computational Insights into Dynamics of Protein Aggregation and Enzyme-Substrate Interactions. The Journal of Physical Chemistry Letters. 3: 3460-9. PMID 26290973 DOI: 10.1021/Jz301597K  0.359
2010 Bora RP, Ozbil M, Prabhakar R. Elucidation of insulin degrading enzyme catalyzed site specific hydrolytic cleavage of amyloid beta peptide: a comparative density functional theory study. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 15: 485-95. PMID 20033747 DOI: 10.1007/S00775-009-0617-2  0.312
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