Timothy A. Chan, Ph.D. - Publications

Affiliations: 
Memorial Sloan Kettering Cancer Center, Rockville Centre, NY, United States 

185 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Chan TA, Hermeking H, Lengauer C, Kinzler KW, Vogelstein B. Author Correction: 14-3-3σ is required to prevent mitotic catastrophe after DNA damage. Nature. PMID 37626188 DOI: 10.1038/s41586-023-06446-1  0.326
2022 Sinha N, Sinha S, Valero C, Schaffer AA, Aldape K, Litchfield K, Chan TA, Morris LG, Ruppin E. Immune determinants of the association between tumor mutational burden and immunotherapy response across cancer types. Cancer Research. PMID 35385572 DOI: 10.1158/0008-5472.CAN-21-2542  0.3
2021 Samstein RM, Krishna C, Ma X, Pei X, Lee KW, Makarov V, Kuo F, Chung J, Srivastava RM, Purohit TA, Hoen DR, Mandal R, Setton J, Wu W, Shah R, ... ... Chan TA, et al. Mutations in and differentially affect the tumor microenvironment and response to checkpoint blockade immunotherapy. Nature Cancer. 1: 1188-1203. PMID 33834176 DOI: 10.1038/s43018-020-00139-8  0.316
2020 Hakimi AA, Attalla K, DiNatale RG, Ostrovnaya I, Flynn J, Blum KA, Ged Y, Hoen D, Kendall SM, Reznik E, Bowman A, Hwee J, Fong CJ, Kuo F, Voss MH, ... Chan TA, et al. A pan-cancer analysis of PBAF complex mutations and their association with immunotherapy response. Nature Communications. 11: 4168. PMID 32820162 DOI: 10.1038/S41467-020-17965-0  0.408
2020 Pitter KL, Casey DL, Lu YC, Hannum M, Zhang Z, Song X, Pecorari I, McMillan B, Ma J, Samstein RM, Pei IX, Khan AJ, Braunstein LZ, Morris LGT, Barker CA, ... ... Chan TA, et al. Pathogenic ATM Mutations in Cancer and a Genetic Basis for Radiotherapeutic Efficacy. Journal of the National Cancer Institute. PMID 32726432 DOI: 10.1093/Jnci/Djaa095  0.378
2020 Katsoulakis E, Yu Y, Apte AP, Leeman JE, Katabi N, Morris L, Deasy JO, Chan TA, Lee NY, Riaz N, Hatzoglou V, Oh JH. Radiomic analysis identifies tumor subtypes associated with distinct molecular and microenvironmental factors in head and neck squamous cell carcinoma. Oral Oncology. 110: 104877. PMID 32619927 DOI: 10.1016/J.Oraloncology.2020.104877  0.346
2020 Ged Y, Chaim JL, DiNatale RG, Knezevic A, Kotecha RR, Carlo MI, Lee CH, Foster A, Feldman DR, Teo MY, Iyer G, Chan T, Patil S, Motzer RJ, Hakimi AA, et al. DNA damage repair pathway alterations in metastatic clear cell renal cell carcinoma and implications on systemic therapy. Journal For Immunotherapy of Cancer. 8. PMID 32571992 DOI: 10.1136/Jitc-2019-000230  0.35
2020 Wang Y, Wild AT, Turcan S, Wu WH, Sigel C, Klimstra DS, Ma X, Gong Y, Holland EC, Huse JT, Chan TA. Targeting therapeutic vulnerabilities with PARP inhibition and radiation in IDH-mutant gliomas and cholangiocarcinomas. Science Advances. 6: eaaz3221. PMID 32494639 DOI: 10.1126/Sciadv.Aaz3221  0.403
2020 Takahashi H, Kawaguchi T, Yan L, Peng X, Qi Q, Morris LGT, Chan TA, Tsung A, Otsuji E, Takabe K. Immune Cytolytic Activity for Comprehensive Understanding of Immune Landscape in Hepatocellular Carcinoma. Cancers. 12. PMID 32414098 DOI: 10.3390/Cancers12051221  0.317
2020 Srivastava RM, Purohit TA, Chan TA. Diverse Neoantigens and the Development of Cancer Therapies. Seminars in Radiation Oncology. 30: 113-128. PMID 32381291 DOI: 10.1016/J.Semradonc.2019.12.001  0.427
2020 Marcon J, DiNatale RG, Sanchez A, Kotecha RR, Gupta S, Kuo F, Makarov V, Sandhu A, Mano R, Silagy AW, Blum KA, Nassau DE, Benfante NE, Ortiz MV, Carlo MI, ... Chan TA, et al. Comprehensive genomic analysis of translocation renal cell carcinoma reveals copy number variations as drivers of disease progression. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 32220885 DOI: 10.1158/1078-0432.Ccr-19-3283  0.331
2020 Galluzzi L, Vitale I, Warren S, Adjemian S, Agostinis P, Martinez AB, Chan TA, Coukos G, Demaria S, Deutsch E, Draganov D, Edelson RL, Formenti SC, Fucikova J, Gabriele L, et al. Consensus guidelines for the definition, detection and interpretation of immunogenic cell death. Journal For Immunotherapy of Cancer. 8. PMID 32209603 DOI: 10.1136/Jitc-2019-000337  0.302
2020 Morris LG, Linxweiler M, Kuo F, Katabi N, Nadeem Z, Dalin MG, Makarov V, Chowell D, Dogan S, Ganly I, Hakimi AA, Wong RJ, Riaz N, Ho AL, Chan TA, et al. The immune microenvironment and neoantigen landscape of aggressive salivary gland carcinomas differ by subtype. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 32060100 DOI: 10.1158/1078-0432.Ccr-19-3758  0.333
2020 Li J, Wang W, Zhang Y, Cieślik M, Guo J, Tan M, Green MD, Wang W, Lin H, Li W, Wei S, Zhou J, Li G, Jing X, Vatan L, ... ... Chan TA, et al. Epigenetic driver mutations in ARID1A shape cancer immune phenotype and immunotherapy. The Journal of Clinical Investigation. PMID 32027624 DOI: 10.1172/Jci134402  0.427
2020 Attalla K, DiNatale RG, Reznik E, Fong C, Sanchez-Vega F, Silagy AW, Weng S, Coleman J, Lee C, Carlo MI, Russo P, Chan TA, Motzer RJ, Schultz ND, Voss MH, et al. Prevalence and landscape of actionable genomic alterations in renal cell carcinoma. Journal of Clinical Oncology. 38: 616-616. DOI: 10.1200/Jco.2020.38.6_Suppl.616  0.406
2020 Hakimi AA, Voss MH, Kuo F, Silagy AW, Marker M, Reising A, Millholland J, Chan TA, Russo P, Motzer RJ. Immune infiltration and angiogenesis as markers of outcome in the post-nephrectomy setting: Transcriptomic data from patients receiving placebo on a randomized phase III trial (PROTECT). Journal of Clinical Oncology. 38: 5082-5082. DOI: 10.1200/Jco.2020.38.15_Suppl.5082  0.331
2020 Lin Y, Zhai S, Kuo F, Chan TA, Morris LG, Ferris RL, Faden DL, Ding F. Abstract PR05: APOBEC mutagenesis is tightly linked to the immune landscape and immunotherapy biomarkers in head and neck squamous cell carcinoma Clinical Cancer Research. 26. DOI: 10.1158/1557-3265.Aacrahns19-Pr05  0.397
2019 Chowell D, Krishna C, Pierini F, Makarov V, Rizvi NA, Kuo F, Morris LGT, Riaz N, Lenz TL, Chan TA. Evolutionary divergence of HLA class I genotype impacts efficacy of cancer immunotherapy. Nature Medicine. PMID 31700181 DOI: 10.1038/S41591-019-0639-4  0.348
2019 Heidegger S, Wintges A, Stritzke F, Bek S, Steiger K, Koenig PA, Göttert S, Engleitner T, Öllinger R, Nedelko T, Fischer JC, Makarov V, Winter C, Rad R, van den Brink MRM, ... ... Chan TA, et al. RIG-I activation is critical for responsiveness to checkpoint blockade. Science Immunology. 4. PMID 31519811 DOI: 10.1182/Blood-2019-128724  0.406
2019 Ho AS, Ochoa A, Jayakumaran G, Zehir A, Valero Mayor C, Tepe J, Makarov V, Dalin MG, He J, Bailey M, Montesion M, Ross JS, Miller VA, Chan L, Ganly I, ... ... Chan TA, et al. Genetic hallmarks of recurrent/metastatic adenoid cystic carcinoma. The Journal of Clinical Investigation. PMID 31483290 DOI: 10.1172/Jci128227  0.37
2019 Faden DL, Ding F, Lin Y, Zhai S, Kuo F, Chan TA, Morris LG, Ferris RL. APOBEC mutagenesis is tightly linked to the immune landscape and immunotherapy biomarkers in head and neck squamous cell carcinoma. Oral Oncology. 96: 140-147. PMID 31422205 DOI: 10.1016/J.Oraloncology.2019.07.020  0.373
2019 Yang W, Morris LGT, Chan TA. Panel-based estimates of tumor mutational burden: characterizing unknown unknowns. Annals of Oncology : Official Journal of the European Society For Medical Oncology. PMID 31410441 DOI: 10.1093/Annonc/Mdz234  0.326
2019 Lee M, Samstein RM, Valero C, Chan TA, Morris LGT. Tumor mutational burden as a predictive biomarker for checkpoint inhibitor immunotherapy. Human Vaccines & Immunotherapeutics. 1-4. PMID 31361563 DOI: 10.1080/21645515.2019.1631136  0.413
2019 Sabio E, Chan TA. The good, the bad, and the ugly: hyperprogression in cancer patients following immune checkpoint therapy. Genome Medicine. 11: 43. PMID 31340855 DOI: 10.1186/S13073-019-0661-7  0.384
2019 Wang J, Linxweiler M, Yang W, Chan TA, Morris LGT. Immunomodulatory and immunotherapeutic implications of tobacco smoking in squamous cell carcinomas and normal airway epithelium. Oncotarget. 10: 3835-3839. PMID 31231463 DOI: 10.18632/Oncotarget.26982  0.347
2019 Ghatalia P, Gordetsky J, Kuo F, Dulaimi E, Cai KQ, Devarajan K, Bae S, Naik G, Chan TA, Uzzo R, Hakimi AA, Sonpavde G, Plimack E. Prognostic impact of immune gene expression signature and tumor infiltrating immune cells in localized clear cell renal cell carcinoma. Journal For Immunotherapy of Cancer. 7: 139. PMID 31138299 DOI: 10.1186/S40425-019-0621-1  0.347
2019 Morris LGT, Chan TA. Lung Cancer Evolution: What's Immunity Got to Do with It? Cancer Cell. 35: 711-713. PMID 31085173 DOI: 10.1016/J.Ccell.2019.04.009  0.376
2019 Mandal R, Samstein RM, Lee KW, Havel JJ, Wang H, Krishna C, Sabio EY, Makarov V, Kuo F, Blecua P, Ramaswamy AT, Durham JN, Bartlett B, Ma X, Srivastava R, ... ... Chan TA, et al. Genetic diversity of tumors with mismatch repair deficiency influences anti-PD-1 immunotherapy response. Science (New York, N.Y.). 364: 485-491. PMID 31048490 DOI: 10.1126/Science.Aau0447  0.389
2019 Wang W, Green M, Choi JE, Gijón M, Kennedy PD, Johnson JK, Liao P, Lang X, Kryczek I, Sell A, Xia H, Zhou J, Li G, Li J, Li W, ... ... Chan TA, et al. CD8 T cells regulate tumour ferroptosis during cancer immunotherapy. Nature. PMID 31043744 DOI: 10.1038/S41586-019-1170-Y  0.351
2019 Yang W, Lee KW, Srivastava RM, Kuo F, Krishna C, Chowell D, Makarov V, Hoen D, Dalin MG, Wexler L, Ghossein R, Katabi N, Nadeem Z, Cohen MA, Tian SK, ... ... Chan TA, et al. Immunogenic neoantigens derived from gene fusions stimulate T cell responses. Nature Medicine. PMID 31011208 DOI: 10.1038/S41591-019-0434-2  0.439
2019 Wang Y, Yang J, Wild AT, Wu WH, Shah R, Danussi C, Riggins GJ, Kannan K, Sulman EP, Chan TA, Huse JT. G-quadruplex DNA drives genomic instability and represents a targetable molecular abnormality in ATRX-deficient malignant glioma. Nature Communications. 10: 943. PMID 30808951 DOI: 10.1038/S41467-019-08905-8  0.315
2019 Casey DL, Pitter KL, Imber BS, Lin A, Chan TA, Beal K, Yamada Y, Feldman DR, Yang TJ. High-dose radiation therapy is needed for intracranial control and long-term survival in patients with non-seminomatous germ cell tumor brain metastases. Journal of Neuro-Oncology. PMID 30771201 DOI: 10.1007/S11060-019-03123-0  0.338
2019 Havel JJ, Chowell D, Chan TA. The evolving landscape of biomarkers for checkpoint inhibitor immunotherapy. Nature Reviews. Cancer. PMID 30755690 DOI: 10.1038/S41568-019-0116-X  0.355
2019 Samstein RM, Lee CH, Shoushtari AN, Hellmann MD, Shen R, Janjigian YY, Barron DA, Zehir A, Jordan EJ, Omuro A, Kaley TJ, Kendall SM, Motzer RJ, Hakimi AA, Voss MH, ... ... Chan TA, et al. Tumor mutational load predicts survival after immunotherapy across multiple cancer types. Nature Genetics. PMID 30643254 DOI: 10.1038/S41588-018-0312-8  0.426
2019 Hakimi AA, Voss MH, Kuo F, Sanchez A, Liu M, Nixon BG, Vuong L, Ostrovnaya I, Chen YB, Reuter V, Riaz N, Cheng Y, Patel P, Marker M, Reising A, ... ... Chan TA, et al. Transcriptomic Profiling of the Tumor Microenvironment Reveals Distinct Subgroups of Clear cell Renal Cell Cancer - Data from a Randomized Phase III Trial. Cancer Discovery. PMID 30622105 DOI: 10.1158/2159-8290.Cd-18-0957  0.401
2019 Hakimi AA, Ged Y, Flynn J, Hoen DR, Di Natale RG, Blum KA, Makarov V, Kuo F, Carlo MI, Lee C, Voss MH, Ostrovnaya I, Chan TA, Motzer RJ. The impact of PBRM1 mutations on overall survival in greater than 2,100 patients treated with immune checkpoint blockade (ICB). Journal of Clinical Oncology. 37: 666-666. DOI: 10.1200/Jco.2019.37.7_Suppl.666  0.381
2019 Lee C, Natale RGD, Chowell D, Makarov V, Redzematovic A, Murray SJ, Carlo MI, Voss MH, Feldman DR, Motzer RJ, Chan TA, Hakimi AA. Genomic biomarkers of response to nivolumab/ipilimumab (nivo/ipi) and nivolumab (nivo) monotherapy in 108 patients with advanced renal cell carcinoma. Journal of Clinical Oncology. 37: 641-641. DOI: 10.1200/Jco.2019.37.7_Suppl.641  0.332
2019 Ged Y, Chaim J, Knezevic A, Carlo MI, Foster A, Feldman DR, Teo MY, Riaz N, Lee C, Patil S, Chan TA, Hakimi AA, Motzer RJ, Voss MH. Alterations in DNA damage repair (DDR) genes and outcomes to systemic therapy in 225 immune-oncology (IO) versus tyrosine kinase inhibitor (TKI) treated metastatic clear cell renal cell carcinoma (mccRCC) patients (pts). Journal of Clinical Oncology. 37: 551-551. DOI: 10.1200/Jco.2019.37.7_Suppl.551  0.35
2019 Luksza M, Leung JP, Solovyov A, Redmond D, Merad M, Gnjatic S, Iacubuzio-Donohue C, DeMatteo RP, Chan TA, Wolchock J, Leach SD, Greenbaum BD, Merghoub T, Balachandran VP. Abstract IA34: Mapping immune recognition of non-self neoantigens in human pancreatic cancer Cancer Immunology Research. 7. DOI: 10.1158/2326-6074.Cricimteatiaacr18-Ia34  0.414
2019 Luksza M, Solovyov A, Vabret N, Balachandran V, Riaz N, Makarov V, Hellmann MD, Snyder A, Funt S, Remark R, Merad M, Gnjatic S, Bajorin DF, Rosenberg J, Leach S, ... ... Chan TA, et al. Abstract IA31: Measuring the emergence of non-self in tumors Cancer Immunology Research. 7. DOI: 10.1158/2326-6074.Cricimteatiaacr18-Ia31  0.375
2019 Rizvi N, Tang P, Bhardwaj N, Chan TA, Weber JS, Vickers M, Pintova S, Hirte H, Segal NH, Dhani N, Cho D, Chia S, Burns C, Tu D, Pearce L, et al. Abstract B207: Nivolumab +/- Ipilimumab in patients with hypermutated cancers detected in blood: NIMBLE Cancer Immunology Research. 7. DOI: 10.1158/2326-6074.Cricimteatiaacr18-B207  0.416
2018 Bulik-Sullivan B, Busby J, Palmer CD, Davis MJ, Murphy T, Clark A, Busby M, Duke F, Yang A, Young L, Ojo NC, Caldwell K, Abhyankar J, Boucher T, Hart MG, ... ... Chan TA, et al. Deep learning using tumor HLA peptide mass spectrometry datasets improves neoantigen identification. Nature Biotechnology. PMID 30556813 DOI: 10.1038/Nbt.4313  0.329
2018 Thulborn KR, Lu A, Atkinson IC, Pauliah M, Beal K, Chan TA, Omuro AMP, Yamada Y, Bradbury MS. Residual Tumor Volume, Cell Volume Fraction and Tumor Cell Kill During Fractionated Chemoradiation Therapy of Human Glioblastoma using Quantitative Sodium MR imaging. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 30487127 DOI: 10.1158/1078-0432.Ccr-18-2079  0.319
2018 Voss MH, Reising A, Cheng Y, Patel P, Marker M, Kuo F, Chan TA, Choueiri TK, Hsieh JJ, Hakimi AA, Motzer RJ. Genomically annotated risk model for advanced renal-cell carcinoma: a retrospective cohort study. The Lancet. Oncology. PMID 30416077 DOI: 10.1016/S1470-2045(18)30648-X  0.334
2018 Chan TA, Yarchoan M, Jaffee E, Swanton C, Quezada SA, Stenzinger A, Peters S. Development of Tumor Mutation Burden as an Immunotherapy Biomarker: Utility for the Oncology Clinic. Annals of Oncology : Official Journal of the European Society For Medical Oncology. PMID 30395155 DOI: 10.1093/Annonc/Mdy495  0.361
2018 Chan CS, Laddha SV, Lewis PW, Koletsky MS, Robzyk K, Da Silva E, Torres PJ, Untch BR, Li J, Bose P, Chan TA, Klimstra DS, Allis CD, Tang LH. ATRX, DAXX or MEN1 mutant pancreatic neuroendocrine tumors are a distinct alpha-cell signature subgroup. Nature Communications. 9: 4158. PMID 30315258 DOI: 10.1038/S41467-018-06498-2  0.318
2018 Galluzzi L, Chan TA, Kroemer G, Wolchok JD, López-Soto A. The hallmarks of successful anticancer immunotherapy. Science Translational Medicine. 10. PMID 30232229 DOI: 10.1126/Scitranslmed.Aat7807  0.394
2018 Yamashita AS, da Costa Rosa M, Borodovsky A, Festuccia WT, Chan T, Riggins GJ. Demethylation and epigenetic modification with 5-Azacytidine reduces IDH1 mutant glioma growth in combination with Temozolomide. Neuro-Oncology. PMID 30184215 DOI: 10.1093/Neuonc/Noy146  0.342
2018 Ganly I, Makarov V, Deraje S, Dong Y, Reznik E, Seshan V, Nanjangud G, Eng S, Bose P, Kuo F, Morris LGT, Landa I, Carrillo Albornoz PB, Riaz N, Nikiforov YE, ... ... Chan TA, et al. Integrated Genomic Analysis of Hürthle Cell Cancer Reveals Oncogenic Drivers, Recurrent Mitochondrial Mutations, and Unique Chromosomal Landscapes. Cancer Cell. 34: 256-270.e5. PMID 30107176 DOI: 10.1016/J.Ccell.2018.07.002  0.375
2018 Lee CH, Yelensky R, Jooss K, Chan TA. Update on Tumor Neoantigens and Their Utility: Why It Is Good to Be Different. Trends in Immunology. PMID 29751996 DOI: 10.1016/J.It.2018.04.005  0.405
2018 Omuro A, Beal K, McNeill K, Young RJ, Thomas A, Lin X, Terziev R, Kaley TJ, DeAngelis LM, Daras M, Gavrilovic IT, Mellinghoff I, Diamond EL, McKeown A, Manne M, ... ... Chan TA, et al. Multicenter Phase IB Trial of Carboxyamidotriazole Orotate and Temozolomide for Recurrent and Newly Diagnosed Glioblastoma and Other Anaplastic Gliomas. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. JCO2017769992. PMID 29683790 DOI: 10.1200/Jco.2017.76.9992  0.306
2018 Desrichard A, Kuo F, Chowell D, Lee KW, Riaz N, Wong RJ, Chan TA, Morris LGT. Tobacco Smoking-Associated Alterations in the Immune Microenvironment of Squamous Cell Carcinomas. Journal of the National Cancer Institute. PMID 29659925 DOI: 10.1093/Jnci/Djy060  0.35
2018 Danussi C, Bose P, Parthasarathy PT, Silberman PC, Van Arnam JS, Vitucci M, Tang OY, Heguy A, Wang Y, Chan TA, Riggins GJ, Sulman EP, Lang F, Creighton CJ, Deneen B, et al. Atrx inactivation drives disease-defining phenotypes in glioma cells of origin through global epigenomic remodeling. Nature Communications. 9: 1057. PMID 29535300 DOI: 10.1038/S41467-018-03476-6  0.367
2018 Voss MH, Kuo F, Sanchez A, Ostrovnaya I, Cheng Y, Patel P, Marker M, Reising A, Chan TA, Motzer RJ, Hakimi AA. Characterizing tumor immune microenvironment (TME) and outcomes for 409 patients (pts) treated on COMPARZ: Distinct clusters emphasize immune infiltration vs. angiogenesis. Journal of Clinical Oncology. 36: 4515-4515. DOI: 10.1200/Jco.2018.36.15_Suppl.4515  0.312
2018 Laddha SV, Chan CS, Lewis P, Koletsky M, Robzyk K, Silva ED, Torres PJ, Untch B, Bose P, Chan T, Klimstra DS, Allis DC, Tang LH. Abstract 1799: ATRX, DAXX or MEN1 mutant pancreatic neuroendocrine tumors are a distinct “alpha-cell signature” subgroup Cancer Research. 78: 1799-1799. DOI: 10.1158/1538-7445.Am2018-1799  0.364
2018 Wild A, Wang Y, Wu W, Haddock SL, Chan TA. Exploitation of 2-Hydroxyglutarate-Mediated Deficiency in Homologous Recombination with PARP Inhibition to Achieve Radiosensitization in IDH-Mutant Tumors International Journal of Radiation Oncology Biology Physics. 102. DOI: 10.1016/J.Ijrobp.2018.06.292  0.321
2017 Sidhom JW, Bessell CA, Havel JJ, Kosmides A, Chan TA, Schneck JP. ImmunoMap: A Bioinformatics Tool for T-Cell Repertoire Analysis. Cancer Immunology Research. PMID 29263161 DOI: 10.1158/2326-6066.Cir-17-0114  0.335
2017 Vandeven NA, Lewis CW, Makarov V, Riaz N, Paulson KG, Hippe DS, Bestick A, Doumani R, Marx T, Takagishi SR, Chan TA, Choi J, Nghiem P. Merkel cell carcinoma patients presenting without a primary lesion have elevated markers of immunity, higher tumor mutation burden and improved survival. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 29246939 DOI: 10.1158/1078-0432.Ccr-17-1678  0.328
2017 Chowell D, Morris LGT, Grigg CM, Weber JK, Samstein RM, Makarov V, Kuo F, Kendall SM, Requena D, Riaz N, Greenbaum B, Carroll J, Garon E, Hyman DM, Zehir A, ... ... Chan TA, et al. Patient HLA class I genotype influences cancer response to checkpoint blockade immunotherapy. Science (New York, N.Y.). PMID 29217585 DOI: 10.1126/Science.Aao4572  0.317
2017 Balachandran VP, Łuksza M, Zhao JN, Makarov V, Moral JA, Remark R, Herbst B, Askan G, Bhanot U, Senbabaoglu Y, Wells DK, Cary CIO, Grbovic-Huezo O, Attiyeh M, Medina B, ... ... Chan TA, et al. Identification of unique neoantigen qualities in long-term survivors of pancreatic cancer. Nature. PMID 29132146 DOI: 10.1038/Nature24462  0.324
2017 Łuksza M, Riaz N, Makarov V, Balachandran VP, Hellmann MD, Solovyov A, Rizvi NA, Merghoub T, Levine AJ, Chan TA, Wolchok JD, Greenbaum BD. A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy. Nature. PMID 29132144 DOI: 10.1038/Nature24473  0.368
2017 Dalin MG, Katabi N, Persson M, Lee KW, Makarov V, Desrichard A, Walsh LA, West L, Nadeem Z, Ramaswami D, Havel JJ, Kuo F, Chadalavada K, Nanjangud GJ, Ganly I, ... ... Chan TA, et al. Multi-dimensional genomic analysis of myoepithelial carcinoma identifies prevalent oncogenic gene fusions. Nature Communications. 8: 1197. PMID 29084941 DOI: 10.1038/S41467-017-01178-Z  0.392
2017 Riaz N, Havel JJ, Makarov V, Desrichard A, Urba WJ, Sims JS, Hodi FS, Martín-Algarra S, Mandal R, Sharfman WH, Bhatia S, Hwu WJ, Gajewski TF, Slingluff CL, Chowell D, ... ... Chan TA, et al. Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab. Cell. PMID 29033130 DOI: 10.1016/J.Cell.2017.09.028  0.402
2017 Grinberg-Bleyer Y, Oh H, Desrichard A, Bhatt DM, Caron R, Chan TA, Schmid RM, Klein U, Hayden MS, Ghosh S. NF-κB c-Rel Is Crucial for the Regulatory T Cell Immune Checkpoint in Cancer. Cell. 170: 1096-1108.e13. PMID 28886380 DOI: 10.1016/J.Cell.2017.08.004  0.336
2017 Walsh LA, Alvarez MJ, Sabio EY, Reyngold M, Makarov V, Mukherjee S, Lee KW, Desrichard A, Turcan Ş, Dalin MG, Rajasekhar VK, Chen S, Vahdat LT, Califano A, Chan TA. An Integrated Systems Biology Approach Identifies TRIM25 as a Key Determinant of Breast Cancer Metastasis. Cell Reports. 20: 1623-1640. PMID 28813674 DOI: 10.1016/J.Celrep.2017.07.052  0.344
2017 Ibrahimpasic T, Xu B, Landa I, Dogan S, Middha S, Seshan V, Deraje Vasudeva S, Carlson D, Migliacci J, Knauf JA, Untch BR, Berger MF, Morris LG, Tuttle RM, Chan TA, et al. Genomic alterations in fatal forms of non-anaplastic thyroid cancer: Identification of MED12 and RBM10 as novel thyroid cancer genes associated with tumor virulence. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 28634282 DOI: 10.1158/1078-0432.Ccr-17-1183  0.408
2017 Samstein RM, Chan TA. Dissecting microsatellite instability in colorectal cancer: one size does not fit all. Genome Medicine. 9: 45. PMID 28539127 DOI: 10.1186/S13073-017-0438-9  0.388
2017 Chiappinelli KB, Strissel PL, Desrichard A, Li H, Henke C, Akman B, Hein A, Rote NS, Cope LM, Snyder A, Makarov V, Budhu S, Slamon DJ, Wolchok JD, Pardoll DM, ... ... Chan TA, et al. Inhibiting DNA Methylation Causes an Interferon Response in Cancer via dsRNA Including Endogenous Retroviruses. Cell. 169: 361. PMID 28388418 DOI: 10.1016/J.Cell.2017.03.036  0.516
2017 Şenbabaoğlu Y, Gejman RS, Winer AG, Liu M, Van Allen EM, de Velasco G, Miao D, Ostrovnaya I, Drill E, Luna A, Weinhold N, Lee W, Manley BJ, Khalil DN, Kaffenberger SD, ... ... Chan TA, et al. Erratum to: Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures. Genome Biology. 18: 46. PMID 28249590 DOI: 10.1186/S13059-017-1180-8  0.326
2017 Ascierto ML, Makohon-Moore A, Lipson EJ, Taube JM, McMiller TL, Berger AE, Fan J, Kaunitz G, Cottrell T, Kohutek Z, Favorov A, Makarov V, Riaz N, Chan TA, Cope L, et al. Transcriptional mechanisms of resistance to anti-PD-1 therapy. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 28193624 DOI: 10.1158/1078-0432.Ccr-17-0270  0.471
2017 Koncar RF, Chu Z, Romick-Rosendale LE, Wells SI, Chan TA, Qi X, Bahassi EM. PLK1 inhibition enhances temozolomide efficacy in IDH1 mutant gliomas. Oncotarget. PMID 28178660 DOI: 10.18632/Oncotarget.15015  0.353
2017 Voss MH, Kuo F, Chen D, Marker M, Patel P, Redzematovic A, Riaz N, Chan TA, Choueiri TK, Hsieh J, Motzer RJ, Hakimi AA. Integrated biomarker analysis for 412 renal cell cancer (RCC) patients (pts) treated on the phase 3 COMPARZ trial: Correlating common mutation events in PBRM1 and BAP1 with angiogenesis expression signatures and outcomes on tyrosine kinase inhibitor (TKI) therapy. Journal of Clinical Oncology. 35: 4523-4523. DOI: 10.1200/Jco.2017.35.15_Suppl.4523  0.363
2017 Sidhom J, Bessell CA, Havel JJ, Chan TA, Schneck JP. Abstract 976: ImmunoMap: a novel bioinformatics tool for immune cell repertoire analysis Cancer Research. 77: 976-976. DOI: 10.1158/1538-7445.Am2017-976  0.367
2017 Ghamsari L, Flano E, Jacques J, Liu B, Yan Z, Alami A, Kelley C, Zhang T, Havel J, Makarov V, Merghoub T, Wolchok JD, Hellman M, Carroll P, Chan T, et al. Abstract 632: Genome-scale neoantigen screening using ATLAS™ prioritizes candidate antigens for immunotherapy in a non-small cell lung cancer patient Cancer Research. 77: 632-632. DOI: 10.1158/1538-7445.Am2017-632  0.403
2017 Chan TA, Riaz N, Havel JJ, Makarov V, Desrichard A, Sims JS, Hodi FS, Martín-Algarra S, Sharfman WH, Bhatia S, Hwu W, Gajewski TF, Slingluff CL, Kendall SM, Chang H, et al. Abstract 2988: Immunogenomic analyses of tumor cells and microenvironment in patients with advanced melanoma before and after treatment with nivolumab Cancer Research. 77: 2988-2988. DOI: 10.1158/1538-7445.Am2017-2988  0.358
2016 Ma J, Setton J, Morris L, Albornoz PB, Barker C, Lok BH, Sherman E, Katabi N, Beal K, Ganly I, Powell SN, Lee N, Chan TA, Riaz N. Genomic analysis of exceptional responders to radiotherapy reveals somatic mutations in ATM. Oncotarget. PMID 28055970 DOI: 10.18632/Oncotarget.14400  0.441
2016 Rajappa P, Cobb WS, Vartanian E, Huang Y, Daly L, Hoffman C, Zhang J, Shen B, Yanowitch R, Garg K, Cisse B, Haddock S, Huse JT, Pisapia DJ, Chan TA, et al. Malignant astrocytic tumor progression potentiated by JAK-mediated recruitment of myeloid cells. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 28039266 DOI: 10.1158/1078-0432.Ccr-16-1508  0.333
2016 Gong Y, Schumacher SE, Wu WH, Tang F, Beroukhim R, Chan TA. Pan-Cancer Analysis Links PARK2 to BCL-XL-Dependent Control of Apoptosis. Neoplasia (New York, N.Y.). 19: 75-83. PMID 28038320 DOI: 10.1016/J.Neo.2016.12.006  0.415
2016 Şenbabaoğlu Y, Gejman RS, Winer AG, Liu M, Van Allen EM, de Velasco G, Miao D, Ostrovnaya I, Drill E, Luna A, Weinhold N, Lee W, Manley BJ, Khalil DN, Kaffenberger SD, ... ... Chan TA, et al. Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures. Genome Biology. 17: 231. PMID 27855702 DOI: 10.1186/S13059-016-1092-Z  0.387
2016 Mandal R, Şenbabaoğlu Y, Desrichard A, Havel JJ, Dalin MG, Riaz N, Lee KW, Ganly I, Hakimi AA, Chan TA, Morris LG. The head and neck cancer immune landscape and its immunotherapeutic implications. Jci Insight. 1: e89829. PMID 27777979 DOI: 10.1172/Jci.Insight.89829  0.374
2016 Marusyk A, Tabassum D, Janiszewska M, Place A, Trinh A, Rozhok AI, Pyne S, Guerrierro J, Shu S, Ekram M, Ishkin A, Cahill DP, Nikolsky Y, Chan TA, Rimawi MF, et al. Spatial proximity to fibroblasts impacts molecular features and therapeutic sensitivity of breast cancer cells influencing clinical outcomes. Cancer Research. PMID 27671678 DOI: 10.1158/0008-5472.Can-16-1457  0.541
2016 Riaz N, Havel JJ, Kendall SM, Makarov V, Walsh LA, Desrichard A, Weinhold N, Chan TA. Recurrent SERPINB3 and SERPINB4 mutations in patients who respond to anti-CTLA4 immunotherapy. Nature Genetics. PMID 27668655 DOI: 10.1038/Ng.3677  0.364
2016 Morris LG, Chandramohan R, West L, Zehir A, Chakravarty D, Pfister DG, Wong RJ, Lee NY, Sherman EJ, Baxi SS, Ganly I, Singh B, Shah JP, Shaha AR, Boyle JO, ... ... Chan TA, et al. The Molecular Landscape of Recurrent and Metastatic Head and Neck Cancers: Insights From a Precision Oncology Sequencing Platform. Jama Oncology. PMID 27442865 DOI: 10.1001/Jamaoncol.2016.1790  0.34
2016 Hellmann M, Rizvi N, Wolchok JD, Chan TA. Genomic profile, smoking, and response to anti-PD-1 therapy in non-small cell lung carcinoma. Molecular & Cellular Oncology. 3: e1048929. PMID 27308563 DOI: 10.1080/23723556.2015.1048929  0.352
2016 Roy DM, Walsh LA, Desrichard A, Huse JT, Wu W, Gao J, Bose P, Lee W, Chan TA. Integrated Genomics for Pinpointing Survival Loci within Arm-Level Somatic Copy Number Alterations. Cancer Cell. 29: 737-50. PMID 27165745 DOI: 10.1016/J.Ccell.2016.03.025  0.362
2016 Zhang X, Rao A, Sette P, Deibert C, Pomerantz A, Kim WJ, Kohanbash G, Chang Y, Park Y, Engh J, Choi J, Chan T, Okada H, Lotze M, Grandi P, et al. IDH mutant gliomas escape natural killer cell immune surveillance by downregulation of NKG2D ligand expression. Neuro-Oncology. PMID 27116977 DOI: 10.1093/Neuonc/Now061  0.348
2016 Mandal R, Chan TA. Personalized Oncology Meets Immunology: The Path toward Precision Immunotherapy. Cancer Discovery. PMID 27107038 DOI: 10.1158/2159-8290.Cd-16-0146  0.413
2016 Dalin MG, Desrichard A, Katabi N, Makarov V, Walsh LA, Lee KW, Wang Q, Armenia J, West L, Dogan S, Wang L, Ramaswami D, Ho AL, Ganly I, Solit D, ... ... Chan TA, et al. Comprehensive molecular characterization of salivary duct carcinoma reveals actionable targets and similarity to apocrine breast cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 27103403 DOI: 10.1158/1078-0432.Ccr-16-0637  0.409
2016 Chiappinelli KB, Strissel PL, Desrichard A, Li H, Henke C, Akman B, Hein A, Rote NS, Cope LM, Snyder A, Makarov V, Budhu S, Slamon DJ, Wolchok JD, Pardoll DM, ... ... Chan TA, et al. Inhibiting DNA Methylation Causes an Interferon Response in Cancer via dsRNA Including Endogenous Retroviruses. Cell. 164: 1073. PMID 27064190 DOI: 10.1016/J.Cell.2015.10.020  0.516
2016 Riaz N, Morris L, Havel JJ, Makarov V, Desrichard A, Chan TA. The role of neoantigens in the response to immune checkpoint blockade. International Immunology. PMID 27048318 DOI: 10.1093/Intimm/Dxw019  0.383
2016 Pitter KL, Tamagno I, Alikhanyan K, Hosni-Ahmed A, Pattwell SS, Donnola S, Dai C, Ozawa T, Chang M, Chan TA, Beal K, Bishop AJ, Barker CA, Jones TS, Hentschel B, et al. Corticosteroids compromise survival in glioblastoma. Brain : a Journal of Neurology. PMID 27020328 DOI: 10.1093/Brain/Aww046  0.367
2016 McGranahan N, Furness AJ, Rosenthal R, Ramskov S, Lyngaa R, Saini SK, Jamal-Hanjani M, Wilson GA, Birkbak NJ, Hiley CT, Watkins TB, Shafi S, Murugaesu N, Mitter R, Akarca AU, ... ... Chan TA, et al. Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade. Science (New York, N.Y.). PMID 26940869 DOI: 10.1126/Science.Aaf1490  0.408
2016 Morris LG, Riaz N, Desrichard A, Şenbabaoğlu Y, Hakimi AA, Makarov V, Reis-Filho JS, Chan TA. Pan-cancer analysis of intratumor heterogeneity as a prognostic determinant of survival. Oncotarget. PMID 26840267 DOI: 10.18632/Oncotarget.7067  0.444
2016 Chowell D, Chan TA. The immunogenicity of cancer mutations and implications for T cell therapy Translational Cancer Research. 5. DOI: 10.21037/10163  0.413
2016 Song D, Swartz MH, Biesecker SG, Borda F, Shah RR, Emtage P, Wierda WG, Cooper LJN, Chan T. Chimeric Antigen Receptor-Modified T Cells for the Treatment of Acute Myeloid Leukemia Expressing CD33 Blood. 128: 4058-4058. DOI: 10.1182/Blood.V128.22.4058.4058  0.303
2016 Chowell D, Krishna S, Snyder A, Vladimir M, Chan TA, Anderson KS. Abstract A116: A predictive model to identify immunogenic neoepitopes in patients with melanoma treated with CTLA-4 blockade Cancer Immunology Research. 4. DOI: 10.1158/2326-6074.Cricimteatiaacr15-A116  0.404
2016 Chiappinelli KB, Strissel PL, Desrichard A, Li H, Henke C, Akman B, Hein A, Rote NS, Cope LM, Snyder A, Makarov V, Budhu S, Wolchok J, Zahnow CA, Mergoub T, ... Chan TA, et al. Abstract B32: Inhibiting DNA methylation causes an interferon response in cancer via dsRNA including endogenous retroviruses Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-B32  0.426
2016 Rao A, Zhang X, Deibert C, Sette P, Chan T, Grandi P, Amankulor N. Abstract 3235: IDH mutant gliomas escape natural killer cell immune surveillance by downregulation of NKG2D ligands Cancer Research. 76: 3235-3235. DOI: 10.1158/1538-7445.Am2016-3235  0.384
2015 Goh G, Walradt T, Markarov V, Blom A, Riaz N, Doumani R, Stafstrom K, Moshiri A, Yelistratova L, Levinsohn J, Chan TA, Nghiem P, Lifton RP, Choi J. Mutational landscape of MCPyV-positive and MCPyV-negative merkel cell carcinomas with implications for immunotherapy. Oncotarget. PMID 26655088 DOI: 10.18632/Oncotarget.6494  0.438
2015 Bai H, Harmancı AS, Erson-Omay EZ, Li J, Coşkun S, Simon M, Krischek B, Özduman K, Omay SB, Sorensen EA, Turcan Ş, Bakırcığlu M, Carrión-Grant G, Murray PB, Clark VE, ... ... Chan TA, et al. Integrated genomic characterization of IDH1-mutant glioma malignant progression. Nature Genetics. PMID 26618343 DOI: 10.1038/Ng.3457  0.4
2015 Desrichard A, Snyder A, Chan TA. Cancer Neoantigens and Applications for Immunotherapy. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 26515495 DOI: 10.1158/1078-0432.Ccr-14-3175  0.364
2015 Snyder A, Makarov V, Hellmann M, Rizvi N, Merghoub T, Wolchok JD, Chan TA. Genetics and immunology: reinvigorated. Oncoimmunology. 4: e1029705. PMID 26451299 DOI: 10.1080/2162402X.2015.1029705  0.33
2015 Chiappinelli KB, Strissel PL, Desrichard A, Li H, Henke C, Akman B, Hein A, Rote NS, Cope LM, Snyder A, Makarov V, Buhu S, Slamon DJ, Wolchok JD, Pardoll DM, ... ... Chan TA, et al. Inhibiting DNA Methylation Causes an Interferon Response in Cancer via dsRNA Including Endogenous Retroviruses. Cell. 162: 974-86. PMID 26317466 DOI: 10.1016/J.Cell.2015.07.011  0.575
2015 Peyser ND, Du Y, Li H, Lui V, Xiao X, Chan TA, Grandis JR. Loss-of-Function PTPRD Mutations Lead to Increased STAT3 Activation and Sensitivity to STAT3 Inhibition in Head and Neck Cancer. Plos One. 10: e0135750. PMID 26267899 DOI: 10.1371/Journal.Pone.0135750  0.424
2015 Martelotto LG, De Filippo MR, Ng CK, Natrajan R, Fuhrmann L, Cyrta J, Piscuoglio S, Wen HC, Lim RS, Shen R, Schultheis AM, Wen YH, Edelweiss M, Mariani O, Stenman G, ... Chan TA, et al. Genomic landscape of adenoid cystic carcinoma of the breast. The Journal of Pathology. PMID 26095796 DOI: 10.1002/Path.4573  0.357
2015 Topalian SL, Wolchok JD, Chan TA, Mellman I, Palucka K, Banchereau J, Rosenberg SA, Dane Wittrup K. Immunotherapy: The path to win the war on cancer? Cell. 161: 185-6. PMID 26042237 DOI: 10.1016/J.Cell.2015.03.045  0.33
2015 Havel JJ, Chan TA. High-resolution genomic analysis: the tumor-immune interface comes into focus. Genome Biology. 16: 65. PMID 25853850 DOI: 10.1186/S13059-015-0631-3  0.321
2015 Rizvi NA, Hellmann MD, Snyder A, Kvistborg P, Makarov V, Havel JJ, Lee W, Yuan J, Wong P, Ho TS, Miller ML, Rekhtman N, Moreira AL, Ibrahim F, Bruggeman C, ... ... Chan TA, et al. Cancer immunology. Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science (New York, N.Y.). 348: 124-8. PMID 25765070 DOI: 10.1126/Science.Aaa1348  0.433
2015 Snyder A, Chan TA. Immunogenic peptide discovery in cancer genomes. Current Opinion in Genetics & Development. 30: 7-16. PMID 25588790 DOI: 10.1016/J.Gde.2014.12.003  0.353
2015 Walsh LA, Roy DM, Reyngold M, Giri D, Snyder A, Turcan S, Badwe CR, Lyman J, Bromberg J, King TA, Chan TA. RECK controls breast cancer metastasis by modulating a convergent, STAT3-dependent neoangiogenic switch. Oncogene. 34: 2189-203. PMID 24931164 DOI: 10.1038/Onc.2014.175  0.378
2015 Ahuja A, Nathanson T, Rubinsteyn A, Snyder A, Hellman M, Chan T, Merghoub T, Wolchok J, Hammerbacher J. Neoantigen homology and predicting response to immune checkpoint blockade in cancer F1000research. 4. DOI: 10.7490/F1000Research.1110758.1  0.331
2015 Omuro AMP, Zehir A, Cheng DT, Berger MF, Hyman DM, Solit DB, Baselga J, Ladanyi M, Arcila ME, Hameed M, Sabbatini P, DeAngelis LM, Gutin PH, Rosenblum M, Mellinghoff IK, ... ... Chan TA, et al. Is Next Generation Sequencing (NGS) Ready for Routine Clinical Practice in Gliomas? Results of a Prospective Study Utilizing the MSK-IMPACT Assay Journal of Clinical Oncology. 33: 2057-2057. DOI: 10.1200/Jco.2015.33.15_Suppl.2057  0.359
2015 Roy DM, Walsh LA, Desrichard A, Gao J, Bose P, Huse JT, Lee W, Chan TA. Abstract LB-169: Multidimensional genomic dissection of chromosome 9p in glioma Cancer Research. 75. DOI: 10.1158/1538-7445.Am2015-Lb-169  0.384
2015 Danussi C, Bose P, Parthasarathy P, Turcan S, Picketts D, Chan T, Huse J. Epig-06Atrx Deficiency Promotes Migratory Behavior In Glioma Cells Of Origin By Dysregulating Genome-Wide Chromatin Accessibility And Modulating Transcriptional Programs. Neuro-Oncology. 17. DOI: 10.1093/Neuonc/Nov214.06  0.373
2014 Riaz N, Morris LG, Lee W, Chan TA. Unraveling the molecular genetics of head and neck cancer through genome-wide approaches. Genes & Diseases. 1: 75-86. PMID 25642447 DOI: 10.1016/J.Gendis.2014.07.002  0.4
2014 Gong Y, Chan TA. Molecular mechanisms orchestrating cyclin stability. Cell Cycle (Georgetown, Tex.). 13: 2487-8. PMID 25486187 DOI: 10.4161/15384101.2014.946376  0.334
2014 Barker CA, Chang M, Beal K, Chan TA. Survival of patients treated with radiation therapy for anaplastic astrocytoma. Radiology and Oncology. 48: 381-6. PMID 25435851 DOI: 10.2478/Raon-2014-0019  0.322
2014 Wolchok JD, Chan TA. Cancer: Antitumour immunity gets a boost. Nature. 515: 496-8. PMID 25428495 DOI: 10.1038/515496A  0.341
2014 Snyder A, Makarov V, Merghoub T, Yuan J, Zaretsky JM, Desrichard A, Walsh LA, Postow MA, Wong P, Ho TS, Hollmann TJ, Bruggeman C, Kannan K, Li Y, Elipenahli C, ... ... Chan TA, et al. Genetic basis for clinical response to CTLA-4 blockade in melanoma. The New England Journal of Medicine. 371: 2189-99. PMID 25409260 DOI: 10.1056/Nejmoa1406498  0.372
2014 Yang TJ, Oh JH, Folkert MR, Gupta G, Shi W, Zhang Z, Morikawa A, Seidman A, Brennan C, Yamada Y, Chan TA, Beal K. Outcomes and prognostic factors in women with 1 to 3 breast cancer brain metastases treated with definitive stereotactic radiosurgery. International Journal of Radiation Oncology, Biology, Physics. 90: 518-25. PMID 25194669 DOI: 10.1016/J.Ijrobp.2014.06.063  0.306
2014 Ortiz B, White JR, Wu WH, Chan TA. Deletion of Ptprd and Cdkn2a cooperate to accelerate tumorigenesis. Oncotarget. 5: 6976-82. PMID 25138050 DOI: 10.18632/Oncotarget.2106  0.35
2014 Reyngold M, Turcan S, Giri D, Kannan K, Walsh LA, Viale A, Drobnjak M, Vahdat LT, Lee W, Chan TA. Remodeling of the methylation landscape in breast cancer metastasis. Plos One. 9: e103896. PMID 25083786 DOI: 10.1371/Journal.Pone.0103896  0.333
2014 Ortiz B, Fabius AW, Wu WH, Pedraza A, Brennan CW, Schultz N, Pitter KL, Bromberg JF, Huse JT, Holland EC, Chan TA. Loss of the tyrosine phosphatase PTPRD leads to aberrant STAT3 activation and promotes gliomagenesis. Proceedings of the National Academy of Sciences of the United States of America. 111: 8149-54. PMID 24843164 DOI: 10.1073/Pnas.1401952111  0.371
2014 Gong Y, Zack TI, Morris LG, Lin K, Hukkelhoven E, Raheja R, Tan IL, Turcan S, Veeriah S, Meng S, Viale A, Schumacher SE, Palmedo P, Beroukhim R, Chan TA. Pan-cancer genetic analysis identifies PARK2 as a master regulator of G1/S cyclins. Nature Genetics. 46: 588-94. PMID 24793136 DOI: 10.1038/Ng.2981  0.357
2014 Roy DM, Walsh LA, Chan TA. Driver mutations of cancer epigenomes. Protein & Cell. 5: 265-96. PMID 24622842 DOI: 10.1007/S13238-014-0031-6  0.427
2014 Ung N, Putoczki TL, Stylli SS, Ng I, Mariadason JM, Chan TA, Zhu HJ, Luwor RB. Anti-EGFR therapeutic efficacy correlates directly with inhibition of STAT3 activity. Cancer Biology & Therapy. 15: 623-32. PMID 24556630 DOI: 10.4161/Cbt.28179  0.357
2014 Leder K, Pitter K, Laplant Q, Hambardzumyan D, Ross BD, Chan TA, Holland EC, Michor F. Mathematical modeling of PDGF-driven glioblastoma reveals optimized radiation dosing schedules. Cell. 156: 603-16. PMID 24485463 DOI: 10.1016/J.Cell.2013.12.029  0.327
2014 Brennan C, Yang TJ, Hilden P, Zhang Z, Chan K, Yamada Y, Chan TA, Lymberis SC, Narayana A, Tabar V, Gutin PH, Ballangrud Ã…, Lis E, Beal K. A phase 2 trial of stereotactic radiosurgery boost after surgical resection for brain metastases. International Journal of Radiation Oncology, Biology, Physics. 88: 130-6. PMID 24331659 DOI: 10.1016/J.Ijrobp.2013.09.051  0.304
2014 Silber J, Harinath G, Parthasarathy PT, Fabius AWM, Turcan S, Chan TA, Huse JT. Abstract 521: Glioma-associated IDH mutation induces miR-34a repression and stem cell-like physiology through enhanced PDGF signaling Cancer Research. 74: 521-521. DOI: 10.1158/1538-7445.Am2014-521  0.312
2013 Turcan S, Fabius AW, Borodovsky A, Pedraza A, Brennan C, Huse J, Viale A, Riggins GJ, Chan TA. Efficient induction of differentiation and growth inhibition in IDH1 mutant glioma cells by the DNMT Inhibitor Decitabine. Oncotarget. 4: 1729-36. PMID 24077826 DOI: 10.18632/Oncotarget.1412  0.404
2013 Borodovsky A, Salmasi V, Turcan S, Fabius AW, Baia GS, Eberhart CG, Weingart JD, Gallia GL, Baylin SB, Chan TA, Riggins GJ. 5-azacytidine reduces methylation, promotes differentiation and induces tumor regression in a patient-derived IDH1 mutant glioma xenograft. Oncotarget. 4: 1737-47. PMID 24077805 DOI: 10.18632/Oncotarget.1408  0.375
2013 Turcan S, Chan TA. MAPping the genomic landscape of low-grade pediatric gliomas. Nature Genetics. 45: 847-9. PMID 23892663 DOI: 10.1038/Ng.2706  0.312
2013 Landa I, Ganly I, Chan TA, Mitsutake N, Matsuse M, Ibrahimpasic T, Ghossein RA, Fagin JA. Frequent somatic TERT promoter mutations in thyroid cancer: higher prevalence in advanced forms of the disease. The Journal of Clinical Endocrinology and Metabolism. 98: E1562-6. PMID 23833040 DOI: 10.1210/Jc.2013-2383  0.398
2013 Tönjes M, Barbus S, Park YJ, Wang W, Schlotter M, Lindroth AM, Pleier SV, Bai AH, Karra D, Piro RM, Felsberg J, Addington A, Lemke D, Weibrecht I, Hovestadt V, ... ... Chan TA, et al. BCAT1 promotes cell proliferation through amino acid catabolism in gliomas carrying wild-type IDH1. Nature Medicine. 19: 901-8. PMID 23793099 DOI: 10.1038/Nm.3217  0.33
2013 Ho AS, Kannan K, Roy DM, Morris LG, Ganly I, Katabi N, Ramaswami D, Walsh LA, Eng S, Huse JT, Zhang J, Dolgalev I, Huberman K, Heguy A, Viale A, ... ... Chan TA, et al. The mutational landscape of adenoid cystic carcinoma. Nature Genetics. 45: 791-8. PMID 23685749 DOI: 10.1038/Ng.2643  0.406
2013 Ho AS, Turcan S, Chan TA. Epigenetic therapy: use of agents targeting deacetylation and methylation in cancer management. Oncotargets and Therapy. 6: 223-32. PMID 23569385 DOI: 10.2147/Ott.S34680  0.355
2013 Rohle D, Popovici-Muller J, Palaskas N, Turcan S, Grommes C, Campos C, Tsoi J, Clark O, Oldrini B, Komisopoulou E, Kunii K, Pedraza A, Schalm S, Silverman L, Miller A, ... ... Chan TA, et al. An inhibitor of mutant IDH1 delays growth and promotes differentiation of glioma cells. Science (New York, N.Y.). 340: 626-30. PMID 23558169 DOI: 10.1126/Science.1236062  0.391
2013 Ganly I, Ricarte Filho J, Eng S, Ghossein R, Morris LG, Liang Y, Socci N, Kannan K, Mo Q, Fagin JA, Chan TA. Genomic dissection of Hurthle cell carcinoma reveals a unique class of thyroid malignancy. The Journal of Clinical Endocrinology and Metabolism. 98: E962-72. PMID 23543667 DOI: 10.1210/Jc.2012-3539  0.373
2013 Morris LG, Ramaswami D, Chan TA. The FAT epidemic: a gene family frequently mutated across multiple human cancer types. Cell Cycle (Georgetown, Tex.). 12: 1011-2. PMID 23493187 DOI: 10.4161/Cc.24305  0.384
2013 Morris LG, Kaufman AM, Gong Y, Ramaswami D, Walsh LA, Turcan ?, Eng S, Kannan K, Zou Y, Peng L, Banuchi VE, Paty P, Zeng Z, Vakiani E, Solit D, ... ... Chan TA, et al. Recurrent somatic mutation of FAT1 in multiple human cancers leads to aberrant Wnt activation. Nature Genetics. 45: 253-61. PMID 23354438 DOI: 10.1038/Ng.2538  0.426
2013 Agrawal N, Jiao Y, Sausen M, Leary R, Bettegowda C, Roberts NJ, Bhan S, Ho AS, Khan Z, Bishop J, Westra WH, Wood LD, Hruban RH, Tufano RP, Robinson B, ... ... Chan TA, et al. Exomic sequencing of medullary thyroid cancer reveals dominant and mutually exclusive oncogenic mutations in RET and RAS. The Journal of Clinical Endocrinology and Metabolism. 98: E364-9. PMID 23264394 DOI: 10.1210/Jc.2012-2703  0.747
2013 Agarwal M, Nitta R, Dovat S, Li G, Arita H, Narita Y, Fukushima S, Tateishi K, Matsushita Y, Yoshida A, Miyakita Y, Ohno M, Collins VP, Kawahara N, Shibui S, ... ... Chan TA, et al. CELL BIOLOGY AND SIGNALING Neuro-Oncology. 15: iii12-iii31. DOI: 10.1093/Neuonc/Not174  0.436
2012 Kannan K, Inagaki A, Silber J, Gorovets D, Zhang J, Kastenhuber ER, Heguy A, Petrini JH, Chan TA, Huse JT. Whole-exome sequencing identifies ATRX mutation as a key molecular determinant in lower-grade glioma. Oncotarget. 3: 1194-203. PMID 23104868 DOI: 10.18632/Oncotarget.689  0.369
2012 Iyer G, Hanrahan AJ, Milowsky MI, Al-Ahmadie H, Scott SN, Janakiraman M, Pirun M, Sander C, Socci ND, Ostrovnaya I, Viale A, Heguy A, Peng L, Chan TA, Bochner B, et al. Genome sequencing identifies a basis for everolimus sensitivity. Science (New York, N.Y.). 338: 221. PMID 22923433 DOI: 10.1126/Science.1226344  0.372
2012 Vakiani E, Janakiraman M, Shen R, Sinha R, Zeng Z, Shia J, Cercek A, Kemeny N, D'Angelica M, Viale A, Heguy A, Paty P, Chan TA, Saltz LB, Weiser M, et al. Comparative genomic analysis of primary versus metastatic colorectal carcinomas. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 30: 2956-62. PMID 22665543 DOI: 10.1200/Jco.2011.38.2994  0.387
2012 Jeschke J, Van Neste L, Glöckner SC, Dhir M, Calmon MF, Deregowski V, Van Criekinge W, Vlassenbroeck I, Koch A, Chan TA, Cope L, Hooker CM, Schuebel KE, Gabrielson E, Winterpacht A, et al. Biomarkers for detection and prognosis of breast cancer identified by a functional hypermethylome screen. Epigenetics. 7: 701-9. PMID 22647880 DOI: 10.4161/Epi.20445  0.337
2012 Lu C, Ward PS, Kapoor GS, Rohle D, Turcan S, Abdel-Wahab O, Edwards CR, Khanin R, Figueroa ME, Melnick A, Wellen KE, O'Rourke DM, Berger SL, Chan TA, Levine RL, et al. IDH mutation impairs histone demethylation and results in a block to cell differentiation. Nature. 483: 474-8. PMID 22343901 DOI: 10.1038/Nature10860  0.319
2012 Turcan S, Rohle D, Goenka A, Walsh LA, Fang F, Yilmaz E, Campos C, Fabius AW, Lu C, Ward PS, Thompson CB, Kaufman A, Guryanova O, Levine R, Heguy A, ... ... Chan TA, et al. IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype. Nature. 483: 479-83. PMID 22343889 DOI: 10.1038/Nature10866  0.389
2012 Dana CE, Glauber KM, Chan TA, Bridge DM, Steele RE. Incorporation of a horizontally transferred gene into an operon during cnidarian evolution. Plos One. 7: e31643. PMID 22328943 DOI: 10.1371/Journal.Pone.0031643  0.42
2012 Meehan M, Parthasarathi L, Moran N, Jefferies CA, Foley N, Lazzari E, Murphy D, Ryan J, Ortiz B, Fabius AW, Chan TA, Stallings RL. Protein tyrosine phosphatase receptor delta acts as a neuroblastoma tumor suppressor by destabilizing the aurora kinase A oncogene. Molecular Cancer. 11: 6. PMID 22305495 DOI: 10.1186/1476-4598-11-6  0.343
2012 Pietanza MC, Kadota K, Huberman K, Sima CS, Fiore JJ, Sumner DK, Travis WD, Heguy A, Ginsberg MS, Holodny AI, Chan TA, Rizvi NA, Azzoli CG, Riely GJ, Kris MG, et al. Phase II trial of temozolomide in patients with relapsed sensitive or refractory small cell lung cancer, with assessment of methylguanine-DNA methyltransferase as a potential biomarker. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 18: 1138-45. PMID 22228633 DOI: 10.1158/1078-0432.Ccr-11-2059  0.318
2012 Morris PG, Reiner AS, Szenberg OR, Clarke JL, Panageas KS, Perez HR, Kris MG, Chan TA, DeAngelis LM, Omuro AM. Leptomeningeal metastasis from non-small cell lung cancer: survival and the impact of whole brain radiotherapy. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. 7: 382-5. PMID 22089116 DOI: 10.1097/Jto.0B013E3182398E4F  0.326
2011 Morris LG, Chan TA. Resistance to EGFR inhibitors: molecular determinants and the enigma of head and neck cancer. Oncotarget. 2: 894-5. PMID 22248868 DOI: 10.18632/Oncotarget.407  0.363
2011 Morris LG, Taylor BS, Bivona TG, Gong Y, Eng S, Brennan CW, Kaufman A, Kastenhuber ER, Banuchi VE, Singh B, Heguy A, Viale A, Mellinghoff IK, Huse J, Ganly I, ... Chan TA, et al. Genomic dissection of the epidermal growth factor receptor (EGFR)/PI3K pathway reveals frequent deletion of the EGFR phosphatase PTPRS in head and neck cancers. Proceedings of the National Academy of Sciences of the United States of America. 108: 19024-9. PMID 22065749 DOI: 10.1073/Pnas.1111963108  0.387
2011 Fang F, Turcan S, Rimner A, Kaufman A, Giri D, Morris LG, Shen R, Seshan V, Mo Q, Heguy A, Baylin SB, Ahuja N, Viale A, Massague J, Norton L, ... ... Chan TA, et al. Breast cancer methylomes establish an epigenomic foundation for metastasis. Science Translational Medicine. 3: 75ra25. PMID 21430268 DOI: 10.1126/Scitranslmed.3001875  0.351
2011 Png KJ, Yoshida M, Zhang XH, Shu W, Lee H, Rimner A, Chan TA, Comen E, Andrade VP, Kim SW, King TA, Hudis CA, Norton L, Hicks J, Massagué J, et al. MicroRNA-335 inhibits tumor reinitiation and is silenced through genetic and epigenetic mechanisms in human breast cancer. Genes & Development. 25: 226-31. PMID 21289068 DOI: 10.1101/Gad.1974211  0.348
2011 Morris LG, Ganly I, Taylor B, Singh B, Viale A, Heguy A, Chan TA. Abstract 3911: Functional copy number alterations (CNAS) in oral cancer Cancer Research. 71: 3911-3911. DOI: 10.1158/1538-7445.Am2011-3911  0.36
2011 Ganly I, Morris L, Taylor B, Singh B, Viale A, Chan T. P124. Dysregulation of the PI3K/AKT/MTOR pathway by mutation and copy number alteration in oral cavity squamous cell cancer Oral Oncology. 47. DOI: 10.1016/J.Oraloncology.2011.06.367  0.426
2010 Morris LG, Veeriah S, Chan TA. Genetic determinants at the interface of cancer and neurodegenerative disease. Oncogene. 29: 3453-64. PMID 20418918 DOI: 10.1038/Onc.2010.127  0.407
2010 Veeriah S, Morris L, Solit D, Chan TA. The familial Parkinson disease gene PARK2 is a multisite tumor suppressor on chromosome 6q25.2-27 that regulates cyclin E. Cell Cycle (Georgetown, Tex.). 9: 1451-2. PMID 20372088 DOI: 10.4161/Cc.9.8.11583  0.451
2010 Veeriah S, Taylor BS, Meng S, Fang F, Yilmaz E, Vivanco I, Janakiraman M, Schultz N, Hanrahan AJ, Pao W, Ladanyi M, Sander C, Heguy A, Holland EC, Paty PB, ... ... Chan TA, et al. Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies. Nature Genetics. 42: 77-82. PMID 19946270 DOI: 10.1038/Ng.491  0.386
2010 Saggese M, Thodima V, Heguy A, Chan TA, Chaganti RSK. Abstract 4924: Gene-specific hyper and hypomethylation in follicular lymphoma progression Cancer Research. 70: 4924-4924. DOI: 10.1158/1538-7445.Am10-4924  0.325
2010 Morris LG, Ganly I, Heguy A, Chan TA. Abstract 2222: Mutational and copy number analysis of the PI3K/Akt/mTOR pathway in oral cavity squamous cell carcinoma Cellular and Molecular Biology. 70: 2222-2222. DOI: 10.1158/1538-7445.Am10-2222  0.324
2010 Pietanza MC, Travis WD, Chan TA, Ginsberg MS, Kris AHMG, Krug LM. Phase II Study of Temozolomide for Relapsed Sensitive or Refractory Small Cell Lung Cancer Pancreas. 39: 279. DOI: 10.1097/01.Mpa.0000363940.51906.5A  0.302
2009 Chan TA, Heguy A. The protein tyrosine phosphatase receptor D, a broadly inactivated tumor suppressor regulating STAT function. Cell Cycle (Georgetown, Tex.). 8: 3063-4. PMID 19755842 DOI: 10.4161/Cc.8.19.9455  0.341
2009 Meng S, Arbit T, Veeriah S, Mellinghoff IK, Fang F, Vivanco I, Rohle D, Chan TA. 14-3-3sigma and p21 synergize to determine DNA damage response following Chk2 inhibition. Cell Cycle (Georgetown, Tex.). 8: 2238-46. PMID 19502805 DOI: 10.4161/Cc.8.14.8998  0.342
2009 Veeriah S, Brennan C, Meng S, Singh B, Fagin JA, Solit DB, Paty PB, Rohle D, Vivanco I, Chmielecki J, Pao W, Ladanyi M, Gerald WL, Liau L, Cloughesy TC, ... ... Chan TA, et al. The tyrosine phosphatase PTPRD is a tumor suppressor that is frequently inactivated and mutated in glioblastoma and other human cancers. Proceedings of the National Academy of Sciences of the United States of America. 106: 9435-40. PMID 19478061 DOI: 10.1073/Pnas.0900571106  0.439
2009 Glöckner SC, Dhir M, Yi JM, McGarvey KE, Van Neste L, Louwagie J, Chan TA, Kleeberger W, de Bruïne AP, Smits KM, Khalid-de Bakker CA, Jonkers DM, Stockbrügger RW, Meijer GA, Oort FA, et al. Methylation of TFPI2 in stool DNA: a potential novel biomarker for the detection of colorectal cancer. Cancer Research. 69: 4691-9. PMID 19435926 DOI: 10.1158/0008-5472.Can-08-0142  0.321
2008 Chan TA, Glockner S, Yi JM, Chen W, Van Neste L, Cope L, Herman JG, Velculescu V, Schuebel KE, Ahuja N, Baylin SB. Convergence of mutation and epigenetic alterations identifies common genes in cancer that predict for poor prognosis. Plos Medicine. 5: e114. PMID 18507500 DOI: 10.1371/Journal.Pmed.0050114  0.436
2008 Rimner A, Ho A, Ahuja N, Schuebel K, Baylin S, Gerald W, Chan T. Syne1 Promoter Hypermethylation as a Predictor of Tumor Aggressiveness in Primary Breast Cancer International Journal of Radiation Oncology*Biology*Physics. 72: S681-S682. DOI: 10.1016/J.Ijrobp.2008.06.563  0.339
2007 Schuebel KE, Chen W, Cope L, Glöckner SC, Suzuki H, Yi JM, Chan TA, Van Neste L, Van Criekinge W, van den Bosch S, van Engeland M, Ting AH, Jair K, Yu W, Toyota M, et al. Comparing the DNA hypermethylome with gene mutations in human colorectal cancer. Plos Genetics. 3: 1709-23. PMID 17892325 DOI: 10.1371/Journal.Pgen.0030157  0.42
2006 Chan TA. Prostaglandins and the colon cancer connection. Trends in Molecular Medicine. 12: 240-4. PMID 16650804 DOI: 10.1016/J.Molmed.2006.04.006  0.34
2003 Chan TA. Cyclooxygenase inhibition and mechanisms of colorectal cancer prevention. Current Cancer Drug Targets. 3: 455-63. PMID 14683503 DOI: 10.2174/1568009033481723  0.336
2002 Chan TA, Wang Z, Dang LH, Vogelstein B, Kinzler KW. Targeted inactivation of CTNNB1 reveals unexpected effects of beta-catenin mutation. Proceedings of the National Academy of Sciences of the United States of America. 99: 8265-70. PMID 12060769 DOI: 10.1073/Pnas.082240999  0.45
2002 Chan TA. Nonsteroidal anti-inflammatory drugs, apoptosis, and colon-cancer chemoprevention. The Lancet. Oncology. 3: 166-74. PMID 11902503 DOI: 10.1016/S1470-2045(02)00680-0  0.325
2001 Hwang PM, Bunz F, Yu J, Rago C, Chan TA, Murphy MP, Kelso GF, Smith RA, Kinzler KW, Vogelstein B. Ferredoxin reductase affects p53-dependent, 5-fluorouracil-induced apoptosis in colorectal cancer cells. Nature Medicine. 7: 1111-7. PMID 11590433 DOI: 10.1038/Nm1001-1111  0.752
2001 Hwang PM, Bunz F, Yu J, Rago C, Chan TA, Murphy MP, Kelso GF, Smith RAJ, Kinzler KW, Vogelstein B. Erratum: Ferredoxin reductase affects p53-dependent, 5-fluorouracil-induced apoptosis in colorectal cancer cells (Nature Medicine (2001) 7 (1111-1117)) Nature Medicine. 7. DOI: 10.1038/Nm1101-1255A  0.743
2000 Chan TA, Hwang PM, Hermeking H, Kinzler KW, Vogelstein B. Cooperative effects of genes controlling the G(2)/M checkpoint. Genes & Development. 14: 1584-8. PMID 10887152 DOI: 10.1101/Gad.14.13.1584  0.501
2000 Ferguson AT, Evron E, Umbricht CB, Pandita TK, Chan TA, Hermeking H, Marks JR, Lambers AR, Futreal PA, Stampfer MR, Sukumar S. High frequency of hypermethylation at the 14-3-3 sigma locus leads to gene silencing in breast cancer. Proceedings of the National Academy of Sciences of the United States of America. 97: 6049-54. PMID 10811911 DOI: 10.1073/Pnas.100566997  0.356
1999 He TC, Chan TA, Vogelstein B, Kinzler KW. PPARdelta is an APC-regulated target of nonsteroidal anti-inflammatory drugs. Cell. 99: 335-45. PMID 10555149 DOI: 10.1016/S0092-8674(00)81664-5  0.489
1999 Chan TA, Hermeking H, Lengauer C, Kinzler KW, Vogelstein B. 14-3-3Sigma is required to prevent mitotic catastrophe after DNA damage. Nature. 401: 616-20. PMID 10524633 DOI: 10.1038/44188  0.496
1998 Chan TA, Morin PJ, Vogelstein B, Kinzler KW. Mechanisms underlying nonsteroidal antiinflammatory drug-mediated apoptosis. Proceedings of the National Academy of Sciences of the United States of America. 95: 681-6. PMID 9435252 DOI: 10.1073/Pnas.95.2.681  0.504
1996 Da Costa LT, Jen J, He TC, Chan TA, Kinzler KW, Vogelstein B. Converting cancer genes into killer genes. Proceedings of the National Academy of Sciences of the United States of America. 93: 4192-6. PMID 8633039 DOI: 10.1073/Pnas.93.9.4192  0.506
1995 Suzuki H, Zhou X, Yin J, Lei J, Jiang HY, Suzuki Y, Chan T, Hannon GJ, Mergner WJ, Abraham JM, Melzer SJ. Intragenic mutations of CDKN2B and CDKN2A in primary human esophageal cancers Human Molecular Genetics. 4: 1883-1887. PMID 8595411 DOI: 10.1093/Hmg/4.10.1883  0.426
1994 Chan TA, Chu CA, Rauen KA, Kroiher M, Tatarewicz SM, Steele RE. Identification of a gene encoding a novel protein-tyrosine kinase containing SH2 domains and ankyrin-like repeats Oncogene. 9: 1253-1259. PMID 8134129  0.409
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