Paul A. Hohenlohe, Ph.D. - Publications

University of Washington, Seattle, Seattle, WA 

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hamede R, Fountain-Jones NM, Arce F, Jones M, Storfer A, Hohenlohe PA, McCallum H, Roche B, Ujvari B, Thomas F. The tumour is in the detail: Local phylogenetic, population and epidemiological dynamics of a transmissible cancer in Tasmanian devils. Evolutionary Applications. 16: 1316-1327. PMID 37492149 DOI: 10.1111/eva.13569  0.318
2023 van Elst T, Schüßler D, Rakotondravony R, Rovanirina VST, Veillet A, Hohenlohe PA, Ratsimbazafy JH, Rasoloarison RM, Rasoloharijaona S, Randrianambinina B, Ramilison ML, Yoder AD, Louis EE, Radespiel U. Diversification processes in Gerp's mouse lemur demonstrate the importance of rivers and altitude as biogeographic barriers in Madagascar's humid rainforests. Ecology and Evolution. 13: e10254. PMID 37408627 DOI: 10.1002/ece3.10254  0.397
2023 Grossfurthner LP, Milano ER, Hohenlohe PA, Waits LP, Richardson BA. Population structure and hybridization under contemporary and future climates in a heteroploid foundational shrub species (). Frontiers in Plant Science. 14: 1155868. PMID 37284723 DOI: 10.3389/fpls.2023.1155868  0.39
2022 Andrews KR, Seaborn T, Egan JP, Fagnan MW, New DD, Chen Z, Hohenlohe PA, Waits LP, Caudill CC, Narum SR. Whole genome resequencing identifies local adaptation associated with environmental variation for redband trout. Molecular Ecology. PMID 36478624 DOI: 10.1111/mec.16810  0.412
2022 Hendricks SA, King JL, Duncan CL, Vickers W, Hohenlohe PA, Davis BW. Genomic Assessment of Cancer Susceptibility in the Threatened Catalina Island Fox (). Genes. 13. PMID 36011407 DOI: 10.3390/genes13081496  0.4
2022 Poelstra JW, Montero BK, Lüdemann J, Yang Z, Rakotondranary SJ, Hohenlohe P, Stetter N, Ganzhorn JU, Yoder AD. RADseq data reveal a lack of admixture in a mouse lemur contact zone contrary to previous microsatellite results. Proceedings. Biological Sciences. 289: 20220596. PMID 35946151 DOI: 10.1098/rspb.2022.0596  0.395
2022 Tiley GP, van Elst T, Teixeira H, Schüßler D, Salmona J, Blanco MB, Ralison JM, Randrianambinina B, Rasoloarison RM, Stahlke AR, Hohenlohe PA, Chikhi L, Louis EE, Radespiel U, Yoder AD. Population genomic structure in Goodman's mouse lemur reveals long-standing separation of Madagascar's Central Highlands and eastern rainforests. Molecular Ecology. PMID 35880414 DOI: 10.1111/mec.16632  0.316
2021 Stahlke AR, Bitume EV, Özsoy ZA, Bean DW, Veillet A, Clark MI, Clark EI, Moran P, Hufbauer RA, Hohenlohe PA. Hybridization and range expansion in tamarisk beetles ( spp.) introduced to North America for classical biological control. Evolutionary Applications. 15: 60-77. PMID 35126648 DOI: 10.1111/eva.13325  0.436
2021 Barbosa S, Andrews KR, Goldberg AR, Gour DS, Hohenlohe PA, Conway CJ, Waits LP. The role of neutral and adaptive genomic variation in population diversification and speciation in two ground squirrel species of conservation concern. Molecular Ecology. PMID 34324748 DOI: 10.1111/mec.16096  0.412
2021 Stahlke AR, Epstein B, Barbosa S, Margres MJ, Patton AH, Hendricks SA, Veillet A, Fraik AK, Schönfeld B, McCallum HI, Hamede R, Jones ME, Storfer A, Hohenlohe PA. Contemporary and historical selection in Tasmanian devils () support novel, polygenic response to transmissible cancer. Proceedings. Biological Sciences. 288: 20210577. PMID 34034517 DOI: 10.1098/rspb.2021.0577  0.332
2020 Magalhaes IS, Whiting JR, D'Agostino D, Hohenlohe PA, Mahmud M, Bell MA, Skúlason S, MacColl ADC. Intercontinental genomic parallelism in multiple three-spined stickleback adaptive radiations. Nature Ecology & Evolution. PMID 33257817 DOI: 10.1038/s41559-020-01341-8  0.407
2020 Hohenlohe PA, Funk WC, Rajora OP. Population genomics for wildlife conservation and management. Molecular Ecology. PMID 33145846 DOI: 10.1111/mec.15720  0.415
2020 Andrews KR, Gerritsen A, Rashed A, Crowder DW, Rondon SI, van Herk WG, Vernon R, Wanner KW, Wilson CM, New DD, Fagnan MW, Hohenlohe PA, Hunter SS. Wireworm (Coleoptera: Elateridae) genomic analysis reveals putative cryptic species, population structure, and adaptation to pest control. Communications Biology. 3: 489. PMID 32895437 DOI: 10.1038/s42003-020-01169-9  0.367
2020 Maselko J, Andrews KR, Hohenlohe PA. Long-lived marine species may be resilient to environmental variability through a temporal portfolio effect. Ecology and Evolution. 10: 6435-6448. PMID 32724524 DOI: 10.1002/Ece3.6378  0.445
2020 Kozakiewicz CP, Ricci L, Patton AH, Stahlke AR, Hendricks SA, Margres MJ, Ruiz-Aravena M, Hamilton DG, Hamede R, McCallum H, Jones ME, Hohenlohe PA, Storfer A. Comparative landscape genetics reveals differential effects of environment on host and pathogen genetic structure in Tasmanian devils (Sarcophilus harrisii) and their transmissible tumor. Molecular Ecology. PMID 32682353 DOI: 10.1111/Mec.15558  0.4
2020 Poelstra J, Salmona J, Tiley GP, Schüßler D, Blanco MB, Andriambeloson JB, Bouchez O, Campbell CR, Etter PD, Hohenlohe PA, Hunnicutt KE, Iribar A, Johnson EA, Kappeler PM, Larsen PA, et al. Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent. Systematic Biology. PMID 32642760 DOI: 10.1093/Sysbio/Syaa053  0.374
2020 Fraik AK, Margres MJ, Epstein B, Barbosa S, Jones M, Hendricks S, Schönfeld B, Stahlke AR, Veillet A, Hamede R, McCallum H, Lopez-Contreras E, Kallinen SJ, Hohenlohe PA, Kelley JL, et al. Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations. Evolution; International Journal of Organic Evolution. PMID 32445281 DOI: 10.1111/Evo.14023  0.443
2020 Stahlke A, Bell D, Dhendup T, Kern B, Pannoni S, Robinson Z, Strait J, Smith S, Hand BK, Hohenlohe PA, Luikart G. Population genomics training for the next generation of conservation geneticists: ConGen 2018 Workshop. The Journal of Heredity. PMID 32037446 DOI: 10.1093/Jhered/Esaa001  0.43
2020 Hoban S, Bruford M, Jackson JD, Lopes-Fernandes M, Heuertz M, Hohenlohe PA, Paz-Vinas I, Sjögren-Gulve P, Segelbacher G, Vernesi C, Aitken S, Bertola LD, Bloomer P, Breed M, Rodríguez-Correa H, et al. Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved Biological Conservation. 248: 108654. DOI: 10.1016/J.Biocon.2020.108654  0.452
2020 Clendenin HR, Adams JR, Ausband DE, Hayden JA, Hohenlohe PA, Waits LP. Combining Harvest and Genetics to Estimate Reproduction in Wolves Journal of Wildlife Management. 84: 492-504. DOI: 10.1002/Jwmg.21820  0.338
2019 Fraik AK, Quackenbush C, Margres MJ, Comte S, Hamilton DG, Kozakiewicz CP, Jones M, Hamede R, Hohenlohe PA, Storfer A, Kelley JL. Transcriptomics of Tasmanian Devil () Ear Tissue Reveals Homogeneous Gene Expression Patterns across a Heterogeneous Landscape. Genes. 10. PMID 31614864 DOI: 10.3390/Genes10100801  0.396
2019 Hohenlohe PA, McCallum HI, Jones ME, Lawrance MF, Hamede RK, Storfer A. Conserving adaptive potential: lessons from Tasmanian devils and their transmissible cancer. Conservation Genetics (Print). 20: 81-87. PMID 31551664 DOI: 10.1007/S10592-019-01157-5  0.513
2019 James S, Jennings G, Kwon YM, Stammnitz M, Fraik A, Storfer A, Comte S, Pemberton D, Fox S, Brown B, Pye R, Woods G, Lyons B, Hohenlohe PA, McCallum H, et al. Tracing the rise of malignant cell lines: Distribution, epidemiology and evolutionary interactions of two transmissible cancers in Tasmanian devils. Evolutionary Applications. 12: 1772-1780. PMID 31548856 DOI: 10.1111/Eva.12831  0.313
2019 Patton AH, Margres MJ, Stahlke AR, Hendricks S, Lewallen K, Hamede RK, Ruiz-Aravena M, Ryder O, McCallum HI, Jones ME, Hohenlohe PA, Storfer A. Contemporary demographic reconstruction methods are robust to genome assembly quality: A case study in Tasmanian Devils. Molecular Biology and Evolution. PMID 31424552 DOI: 10.1093/Molbev/Msz191  0.442
2019 Wells K, Hamede RK, Jones ME, Hohenlohe PA, Storfer A, McCallum HI. Individual and temporal variation in pathogen load predicts long-term impacts of an emerging infectious disease. Ecology. e02613. PMID 30636287 DOI: 10.1002/Ecy.2613  0.344
2018 Heppenheimer E, Brzeski KE, Hinton JW, Patterson BR, Rutledge LY, DeCandia AL, Wheeldon T, Fain SR, Hohenlohe PA, Kays R, White BN, Chamberlain MJ, vonHoldt BM. High genomic diversity and candidate genes under selection associated with range expansion in eastern coyote () populations. Ecology and Evolution. 8: 12641-12655. PMID 30619570 DOI: 10.1002/Ece3.4688  0.507
2018 Heppenheimer E, Harrigan RJ, Rutledge LY, Koepfli KP, DeCandia AL, Brzeski KE, Benson JF, Wheeldon T, Patterson BR, Kays R, Hohenlohe PA, von Holdt BM. Population Genomic Analysis of North American Eastern Wolves (Canis lycaon) Supports Their Conservation Priority Status. Genes. 9. PMID 30518163 DOI: 10.3390/Genes9120606  0.524
2018 Margres MJ, Ruiz-Aravena M, Hamede R, Jones ME, Lawrance MF, Hendricks SA, Patton A, Davis BW, Ostrander EA, McCallum H, Hohenlohe PA, Storfer A. The genomic basis of tumor regression in Tasmanian devils (Sarcophilus harrisii). Genome Biology and Evolution. PMID 30321343 DOI: 10.1093/Gbe/Evy229  0.399
2018 Margres MJ, Jones M, Epstein B, Kerlin DH, Comte S, Fox S, Fraik AK, Hendricks SA, Huxtable S, Lachish S, Lazenby B, O'Rourke SM, Stahlke AR, Wiench CG, Hamede R, ... ... Hohenlohe PA, et al. Large-effect loci affect survival in Tasmanian devils (Sarcophilus harrisii) infected with a transmissible cancer. Molecular Ecology. PMID 30171778 DOI: 10.1111/Mec.14853  0.431
2018 Storfer A, Hohenlohe PA, Margres MJ, Patton A, Fraik AK, Lawrance M, Ricci LE, Stahlke AR, McCallum HI, Jones ME. The devil is in the details: Genomics of transmissible cancers in Tasmanian devils. Plos Pathogens. 14: e1007098. PMID 30071111 DOI: 10.1371/Journal.Ppat.1007098  0.349
2018 Hendricks SA, Schweizer RM, Harrigan RJ, Pollinger JP, Paquet PC, Darimont CT, Adams JR, Waits LP, vonHoldt BM, Hohenlohe PA, Wayne RK. Natural re-colonization and admixture of wolves (Canis lupus) in the US Pacific Northwest: challenges for the protection and management of rare and endangered taxa. Heredity. PMID 29880893 DOI: 10.1038/S41437-018-0094-X  0.48
2018 Andrews KR, Adams JR, Cassirer EF, Plowright RK, Gardner C, Dwire M, Hohenlohe PA, Waits LP. A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data. Molecular Ecology Resources. PMID 29870119 DOI: 10.1111/1755-0998.12910  0.43
2018 Hendricks S, Anderson EC, Antao T, Bernatchez L, Forester BR, Garner B, Hand BK, Hohenlohe PA, Kardos M, Koop B, Sethuraman A, Waples RS, Luikart G. Recent advances in conservation and population genomics data analysis Evolutionary Applications. 11: 1197-1211. DOI: 10.1111/Eva.12659  0.468
2017 Rutledge LY, Devillard S, Boone JQ, Hohenlohe PA, White BN. Correction to 'RAD sequencing and genomic simulations resolve hybrid origins within North American Canis'. Biology Letters. 13. PMID 29093178 DOI: 10.1098/Rsbl.2017.0594  0.341
2017 Hendricks S, Epstein B, Schönfeld B, Wiench C, Hamede R, Jones M, Storfer A, Hohenlohe P. Conservation implications of limited genetic diversity and population structure in Tasmanian devils (Sarcophilus harrisii). Conservation Genetics (Print). 18: 977-982. PMID 28966567 DOI: 10.1007/S10592-017-0939-5  0.517
2017 Hohenlohe PA, Rutledge LY, Waits LP, Andrews KR, Adams JR, Hinton JW, Nowak RM, Patterson BR, Wydeven AP, Wilson PA, White BN. Comment on "Whole-genome sequence analysis shows two endemic species of North American wolf are admixtures of the coyote and gray wolf". Science Advances. 3: e1602250. PMID 28630899 DOI: 10.1126/Sciadv.1602250  0.451
2017 Wells K, Hamede RK, Kerlin DH, Storfer A, Hohenlohe PA, Jones ME, McCallum HI. Infection of the fittest: devil facial tumour disease has greatest effect on individuals with highest reproductive output. Ecology Letters. PMID 28489304 DOI: 10.1111/Ele.12776  0.316
2017 Catchen JM, Hohenlohe PA, Bernatchez L, Funk WC, Andrews KR, Allendorf FW. Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations. Molecular Ecology Resources. PMID 28319339 DOI: 10.1111/1755-0998.12669  0.491
2016 Kovach RP, Hand BK, Hohenlohe PA, Cosart TF, Boyer MC, Neville HH, Muhlfeld CC, Amish SJ, Carim K, Narum SR, Lowe WH, Allendorf FW, Luikart G. Vive la résistance: genome-wide selection against introduced alleles in invasive hybrid zones. Proceedings. Biological Sciences. 283. PMID 27881749 DOI: 10.1098/Rspb.2016.1380  0.511
2016 Cleary KA, Waits LP, Hohenlohe PA. Development and characterization of fourteen novel microsatellite markers for the chestnut short-tailed fruit bat (Carollia castanea), and cross-amplification to related species. Peerj. 4: e2465. PMID 27688969 DOI: 10.7717/Peerj.2465  0.43
2016 Epstein B, Jones M, Hamede R, Hendricks S, McCallum H, Murchison EP, Schönfeld B, Wiench C, Hohenlohe P, Storfer A. Rapid evolutionary response to a transmissible cancer in Tasmanian devils. Nature Communications. 7: 12684. PMID 27575253 DOI: 10.1038/Ncomms12684  0.403
2016 Trumbo DR, Epstein B, Hohenlohe PA, Alford RA, Schwarzkopf L, Storfer A. Mixed population genomics support for the central marginal hypothesis across the invasive range of the cane toad (Rhinella marina) in Australia. Molecular Ecology. PMID 27393238 DOI: 10.1111/Mec.13754  0.494
2016 Magalhaes IS, D'Agostino D, Hohenlohe PA, MacColl AD. The ecology of an adaptive radiation of three-spined stickleback from North Uist, Scotland. Molecular Ecology. PMID 27374399 DOI: 10.1111/Mec.13746  0.493
2016 Kim MS, Hohenlohe PA, Kim KH, Seo ST, Klopfenstein NB. Genetic diversity and population structure of Raffaelea quercus-mongolicae, a fungus associated with oak mortality in South Korea. Forest Pathology. 46: 164-167. PMID 27087782 DOI: 10.1111/Efp.12263  0.454
2016 Benestan L, Ferchaud AL, Hohenlohe P, Garner BA, Naylor GJ, Baums I, Schwartz M, Kelley JL, Luikart G. Conservation genomics of natural and managed populations: building a conceptual and practical framework. Molecular Ecology. PMID 27086132 DOI: 10.1111/Mec.13647  0.439
2016 Funk WC, Lovich RE, Hohenlohe PA, Hofman CA, Morrison SA, Sillett TS, Ghalambor CK, Maldonado JE, Rick TC, Day MD, Polato NR, Fitzpatrick SW, Coonan TJ, Crooks KR, Dillon A, et al. Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis). Molecular Ecology. PMID 26992010 DOI: 10.1111/Mec.13605  0.518
2016 Gerritsen AT, New DD, Robison BD, Rashed A, Hohenlohe P, Forney L, Rashidi M, Wilson CM, Settles ML. Full Mitochondrial Genome Sequence of the Sugar Beet Wireworm Limonius californicus (Coleoptera: Elateridae), a Common Agricultural Pest. Genome Announcements. 4. PMID 26798113 DOI: 10.1128/Genomea.01628-15  0.388
2016 Andrews KR, Good JM, Miller MR, Luikart G, Hohenlohe PA. Harnessing the power of RADseq for ecological and evolutionary genomics. Nature Reviews. Genetics. PMID 26729255 DOI: 10.1038/Nrg.2015.28  0.48
2016 Rutledge LY, Devillard S, Hohenlohe PA, White BN. Considering all the evidence: A reply to Sefc and Koblmüller (2016) Biology Letters. 12. DOI: 10.1098/Rsbl.2015.1009  0.32
2015 Rutledge LY, Devillard S, Boone JQ, Hohenlohe PA, White BN. RAD sequencing and genomic simulations resolve hybrid origins within North American Canis. Biology Letters. 11. PMID 26156129 DOI: 10.1098/Rsbl.2015.0303  0.39
2015 MacPherson A, Hohenlohe PA, Nuismer SL. Trait dimensionality explains widespread variation in local adaptation. Proceedings. Biological Sciences / the Royal Society. 282. PMID 25631990 DOI: 10.1098/Rspb.2014.1570  0.336
2015 Hand BK, Hether TD, Kovach RP, Muhlfeld CC, Amish SJ, Boyer MC, O’Rourke SM, Miller MR, Lowe WH, Hohenlohe PA, Luikart G. Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing Current Zoology. 61: 146-154. DOI: 10.1093/Czoolo/61.1.146  0.487
2014 Stuart YE, Campbell TS, Hohenlohe PA, Reynolds RG, Revell LJ, Losos JB. Rapid evolution of a native species following invasion by a congener. Science (New York, N.Y.). 346: 463-6. PMID 25342801 DOI: 10.1126/Science.1257008  0.37
2014 Hohenlohe PA. Ecological genomics in full colour. Molecular Ecology. 23: 5129-31. PMID 25330852 DOI: 10.1111/Mec.12945  0.531
2014 Andrews KR, Hohenlohe PA, Miller MR, Hand BK, Seeb JE, Luikart G. Trade-offs and utility of alternative RADseq methods: reply to Puritz et al. Molecular Ecology. 23: 5943-6. PMID 25319129 DOI: 10.1111/Mec.12964  0.32
2014 Seehausen O, Butlin RK, Keller I, Wagner CE, Boughman JW, Hohenlohe PA, Peichel CL, Saetre GP, Bank C, Brännström A, Brelsford A, Clarkson CS, Eroukhmanoff F, Feder JL, Fischer MC, et al. Genomics and the origin of species. Nature Reviews. Genetics. 15: 176-92. PMID 24535286 DOI: 10.1038/Nrg3644  0.431
2014 Hether TD, Hohenlohe PA. Genetic regulatory network motifs constrain adaptation through curvature in the landscape of mutational (co)variance. Evolution; International Journal of Organic Evolution. 68: 950-64. PMID 24219635 DOI: 10.1111/Evo.12313  0.368
2013 Narum SR, Buerkle CA, Davey JW, Miller MR, Hohenlohe PA. Genotyping-by-sequencing in ecological and conservation genomics. Molecular Ecology. 22: 2841-7. PMID 23711105 DOI: 10.1111/Mec.12350  0.499
2013 Catchen J, Hohenlohe PA, Bassham S, Amores A, Cresko WA. Stacks: an analysis tool set for population genomics. Molecular Ecology. 22: 3124-40. PMID 23701397 DOI: 10.1111/Mec.12354  0.494
2013 Hohenlohe PA, Day MD, Amish SJ, Miller MR, Kamps-Hughes N, Boyer MC, Muhlfeld CC, Allendorf FW, Johnson EA, Luikart G. Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing. Molecular Ecology. 22: 3002-13. PMID 23432212 DOI: 10.1111/Mec.12239  0.489
2012 Anderson JL, Rodríguez Marí A, Braasch I, Amores A, Hohenlohe P, Batzel P, Postlethwait JH. Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics. Plos One. 7: e40701. PMID 22792396 DOI: 10.1371/Journal.Pone.0040701  0.405
2012 Kimmel CB, Hohenlohe PA, Ullmann B, Currey M, Cresko WA. Developmental dissociation in morphological evolution of the stickleback opercle. Evolution & Development. 14: 326-37. PMID 22765204 DOI: 10.1111/J.1525-142X.2012.00551.X  0.303
2012 Funk WC, McKay JK, Hohenlohe PA, Allendorf FW. Harnessing genomics for delineating conservation units. Trends in Ecology & Evolution. 27: 489-96. PMID 22727017 DOI: 10.1016/J.Tree.2012.05.012  0.525
2012 Amish SJ, Hohenlohe PA, Painter S, Leary RF, Muhlfeld C, Allendorf FW, Luikart G. RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species-diagnostic SNP assays Molecular Ecology Resources. 12: 653-660. PMID 22672623 DOI: 10.1111/J.1755-0998.2012.03157.X  0.45
2012 Hohenlohe PA, Catchen J, Cresko WA. Population genomic analysis of model and nonmodel organisms using sequenced RAD tags. Methods in Molecular Biology (Clifton, N.J.). 888: 235-60. PMID 22665285 DOI: 10.1007/978-1-61779-870-2_14  0.549
2012 Hohenlohe PA, Bassham S, Currey M, Cresko WA. Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 395-408. PMID 22201169 DOI: 10.1098/Rstb.2011.0245  0.531
2011 Catchen JM, Amores A, Hohenlohe P, Cresko W, Postlethwait JH. Stacks: building and genotyping Loci de novo from short-read sequences. G3 (Bethesda, Md.). 1: 171-82. PMID 22384329 DOI: 10.1534/G3.111.000240  0.477
2011 Etter PD, Bassham S, Hohenlohe PA, Johnson EA, Cresko WA. SNP discovery and genotyping for evolutionary genetics using RAD sequencing. Methods in Molecular Biology (Clifton, N.J.). 772: 157-78. PMID 22065437 DOI: 10.1007/978-1-61779-228-1_9  0.508
2011 Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML. Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews. Genetics. 12: 499-510. PMID 21681211 DOI: 10.1038/Nrg3012  0.487
2011 Hohenlohe PA, Amish SJ, Catchen JM, Allendorf FW, Luikart G. Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout Molecular Ecology Resources. 11: 117-122. PMID 21429168 DOI: 10.1111/J.1755-0998.2010.02967.X  0.465
2010 Hohenlohe PA, Phillips PC, Cresko WA. USING POPULATION GENOMICS TO DETECT SELECTION IN NATURAL POPULATIONS: KEY CONCEPTS AND METHODOLOGICAL CONSIDERATIONS. International Journal of Plant Sciences. 171: 1059-1071. PMID 21218185 DOI: 10.1086/656306  0.527
2010 Allendorf FW, Hohenlohe PA, Luikart G. Genomics and the future of conservation genetics Nature Reviews Genetics. 11: 697-709. PMID 20847747 DOI: 10.1038/Nrg2844  0.52
2010 Hohenlohe PA, Arnold SJ. Dimensionality of mate choice, sexual isolation, and speciation. Proceedings of the National Academy of Sciences of the United States of America. 107: 16583-8. PMID 20823250 DOI: 10.1073/Pnas.1003537107  0.334
2010 Emerson KJ, Merz CR, Catchen JM, Hohenlohe PA, Cresko WA, Bradshaw WE, Holzapfel CM. Resolving postglacial phylogeography using high-throughput sequencing Proceedings of the National Academy of Sciences of the United States of America. 107: 16196-16200. PMID 20798348 DOI: 10.1073/Pnas.1006538107  0.505
2010 Hohenlohe PA, Bassham S, Etter PD, Stiffler N, Johnson EA, Cresko WA. Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. Plos Genetics. 6: e1000862. PMID 20195501 DOI: 10.1371/Journal.Pgen.1000862  0.543
2009 Uyeda JC, Arnold SJ, Hohenlohe PA, Mead LS. Drift promotes speciation by sexual selection. Evolution; International Journal of Organic Evolution. 63: 583-94. PMID 19087180 DOI: 10.1111/J.1558-5646.2008.00589.X  0.32
2008 Arnold SJ, Bürger R, Hohenlohe PA, Ajie BC, Jones AG. Understanding the evolution and stability of the G-matrix. Evolution; International Journal of Organic Evolution. 62: 2451-61. PMID 18973631 DOI: 10.1111/J.1558-5646.2008.00472.X  0.316
2008 Calcott B, Balcan D, Hohenlohe PA. A publish-subscribe model of genetic networks. Plos One. 3: e3245. PMID 18802467 DOI: 10.1371/Journal.Pone.0003245  0.3
2008 Hohenlohe PA, Arnold SJ. MIPoD: a hypothesis-testing framework for microevolutionary inference from patterns of divergence. The American Naturalist. 171: 366-85. PMID 18194086 DOI: 10.1086/527498  0.412
2004 Hohenlohe PA. Limits to gene flow in marine animals with planktonic larvae: Models of Littorina species around Point Conception, California Biological Journal of the Linnean Society. 82: 169-187. DOI: 10.1111/J.1095-8312.2004.00318.X  0.306
2002 Hohenlohe PA. Life history of Littorina scutulata and L. plena, sibling gastropod species with planktotrophic larvae Invertebrate Biology. 121: 25-37. DOI: 10.1111/J.1744-7410.2002.Tb00126.X  0.318
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