| Year |
Citation |
Score |
| 2023 |
Kosmopoulos JC, Campbell DE, Whitaker RJ, Wilbanks EG. Horizontal Gene Transfer and CRISPR Targeting Drive Phage-Bacterial Host Interactions and Coevolution in "Pink Berry" Marine Microbial Aggregates. Applied and Environmental Microbiology. 89: e0017723. PMID 37404190 DOI: 10.1128/aem.00177-23 |
0.36 |
|
| 2023 |
Kosmopoulos JC, Campbell DE, Whitaker RJ, Wilbanks EG. Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and coevolution in pink berry marine microbial aggregates. Biorxiv : the Preprint Server For Biology. PMID 36798152 DOI: 10.1101/2023.02.06.527410 |
0.365 |
|
| 2022 |
Zhang C, Whitaker RJ. Transposon Insertion Mutagenesis in Hyperthermophilic Crenarchaeon Sulfolobus islandicus. Methods in Molecular Biology (Clifton, N.J.). 2522: 163-176. PMID 36125749 DOI: 10.1007/978-1-0716-2445-6_10 |
0.305 |
|
| 2022 |
Orazi G, Collins AJ, Whitaker RJ. Prediction of Prophages and Their Host Ranges in Pathogenic and Commensal Species. Msystems. e0008322. PMID 35418239 DOI: 10.1128/msystems.00083-22 |
0.317 |
|
| 2022 |
DeWerff SJ, Zhang C, Schneider J, Whitaker RJ. Intraspecific antagonism through viral toxin encoded by chronic spindle-shaped virus. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 377: 20200476. PMID 34839697 DOI: 10.1098/rstb.2020.0476 |
0.307 |
|
| 2020 |
Urtecho G, Campbell DE, Hershey DM, Hussain FA, Whitaker RJ, O'Toole GA. Discovering the Molecular Determinants of Phaeobacter inhibens Susceptibility to Phaeobacter Phage MD18. Msphere. 5. PMID 33148823 DOI: 10.1128/mSphere.00898-20 |
0.384 |
|
| 2020 |
Campbell DE, Ly LK, Ridlon JM, Hsiao A, Whitaker RJ, Degnan PH. Infection with Bacteroides Phage BV01 Alters the Host Transcriptome and Bile Acid Metabolism in a Common Human Gut Microbe. Cell Reports. 32: 108142. PMID 32937127 DOI: 10.1016/J.Celrep.2020.108142 |
0.352 |
|
| 2020 |
DeWerff SJ, Bautista MA, Pauly M, Zhang C, Whitaker RJ. Killer Archaea: Virus-Mediated Antagonism to CRISPR-Immune Populations Results in Emergent Virus-Host Mutualism. Mbio. 11. PMID 32345641 DOI: 10.1128/Mbio.00404-20 |
0.394 |
|
| 2020 |
Weitzel CS, Li L, Zhang C, Eilts KK, Bretz NM, Gatten AL, Whitaker RJ, Martinis SA. Duplication of leucyl-tRNA synthetase in an archaeal extremophile may play a role in adaptation to variable environmental conditions. The Journal of Biological Chemistry. PMID 32102848 DOI: 10.1074/Jbc.Ra118.006481 |
0.332 |
|
| 2020 |
Athukoralage JS, McMahon SA, Zhang C, Grüschow S, Graham S, Krupovic M, Whitaker RJ, Gloster TM, White MF. An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity. Nature. PMID 31942067 DOI: 10.1038/S41586-019-1909-5 |
0.352 |
|
| 2019 |
Rowland EF, Bautista MA, Zhang C, Whitaker RJ. Surface resistance to SSVs and SIRVs in pilin deletions of Sulfolobus islandicus. Molecular Microbiology. PMID 31774609 DOI: 10.1111/Mmi.14435 |
0.387 |
|
| 2019 |
Ozer EA, Nnah E, Didelot X, Whitaker RJ, Hauser AR. The population structure of Pseudomonas aeruginosa is characterized by genetic isolation of exoU+ and exoS+ lineages. Genome Biology and Evolution. PMID 31173069 DOI: 10.1093/Gbe/Evz119 |
0.369 |
|
| 2019 |
Weitz JS, Li G, Gulbudak H, Cortez MH, Whitaker RJ. Viral invasion fitness across a continuum from lysis to latency. Virus Evolution. 5: vez006. PMID 31024737 DOI: 10.1093/Ve/Vez006 |
0.388 |
|
| 2019 |
Westra ER, van Houte S, Gandon S, Whitaker R. The ecology and evolution of microbial CRISPR-Cas adaptive immune systems. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20190101. PMID 30905294 DOI: 10.1098/Rstb.2019.0101 |
0.365 |
|
| 2019 |
Pauly MD, Bautista MA, Black JA, Whitaker RJ. Diversified local CRISPR-Cas immunity to viruses of Sulfolobus islandicus. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20180093. PMID 30905292 DOI: 10.1098/Rstb.2018.0093 |
0.392 |
|
| 2018 |
Zhang C, Phillips APR, Wipfler RL, Olsen GJ, Whitaker RJ. The essential genome of the crenarchaeal model Sulfolobus islandicus. Nature Communications. 9: 4908. PMID 30464174 DOI: 10.1038/S41467-018-07379-4 |
0.401 |
|
| 2018 |
Munson-McGee JH, Peng S, Dewerff S, Stepanauskas R, Whitaker RJ, Weitz JS, Young MJ. A virus or more in (nearly) every cell: ubiquitous networks of virus-host interactions in extreme environments. The Isme Journal. PMID 29467398 DOI: 10.1038/S41396-018-0071-7 |
0.394 |
|
| 2017 |
Zhang C, Whitaker RJ. Microhomology Mediated High-throughput Gene Inactivation Strategy for Hyperthermophilic Crenarchaeon Sulfolobus islandicus. Applied and Environmental Microbiology. PMID 29030445 DOI: 10.1128/Aem.02167-17 |
0.451 |
|
| 2017 |
Anderson RE, Kouris A, Seward CH, Campbell KM, Whitaker RJ. Structured populations of Sulfolobus acidocaldarius with susceptibility to mobile genetic elements. Genome Biology and Evolution. PMID 28633403 DOI: 10.1093/Gbe/Evx104 |
0.492 |
|
| 2017 |
Bautista MA, Black JA, Youngblut ND, Whitaker RJ. Differentiation and Structure in Sulfolobus islandicus Rod-Shaped Virus Populations. Viruses. 9. PMID 28534836 DOI: 10.3390/V9050120 |
0.481 |
|
| 2017 |
Wagner A, Whitaker RJ, Krause DJ, Heilers JH, van Wolferen M, van der Does C, Albers SV. Mechanisms of gene flow in archaea. Nature Reviews. Microbiology. PMID 28502981 DOI: 10.1038/Nrmicro.2017.41 |
0.404 |
|
| 2017 |
Campbell KM, Kouris A, England W, Anderson RE, McCleskey RB, Nordstrom DK, Whitaker RJ. Sulfolobus islandicus meta-populations in Yellowstone National Park hot springs. Environmental Microbiology. PMID 28276174 DOI: 10.1111/1462-2920.13728 |
0.372 |
|
| 2016 |
Zhang C, She Q, Bi H, Whitaker RJ. The apt/6-methylpurine counterselection system and its applications in genetic studies in the hyperthermophilic archaeon Sulfolobus islandicus. Applied and Environmental Microbiology. PMID 26969706 DOI: 10.1128/Aem.00455-16 |
0.403 |
|
| 2016 |
Whitaker RJ, Vanderpool CK. CRISPR-Cas Gatekeeper: Slow on the Uptake but Gets the Job Done. Cell Host & Microbe. 19: 135-7. PMID 26867170 DOI: 10.1016/J.Chom.2016.01.015 |
0.343 |
|
| 2015 |
Smith MW, Davis RE, Youngblut ND, Kärnä T, Herfort L, Whitaker RJ, Metcalf WW, Tebo BM, Baptista AM, Simon HM. Metagenomic evidence for reciprocal particle exchange between the mainstem estuary and lateral bay sediments of the lower Columbia River. Frontiers in Microbiology. 6: 1074. PMID 26483785 DOI: 10.3389/Fmicb.2015.01074 |
0.326 |
|
| 2015 |
Krause DJ, Whitaker RJ. Inferring Speciation Processes from Patterns of Natural Variation in Microbial Genomes. Systematic Biology. 64: 926-35. PMID 26316424 DOI: 10.1093/Sysbio/Syv050 |
0.496 |
|
| 2015 |
Bautista MA, Zhang C, Whitaker RJ. Virus-induced dormancy in the archaeon Sulfolobus islandicus. Mbio. 6. PMID 25827422 DOI: 10.1128/Mbio.02565-14 |
0.335 |
|
| 2015 |
Youngblut ND, Wirth JS, Henriksen JR, Smith M, Simon H, Metcalf WW, Whitaker RJ. Genomic and phenotypic differentiation among Methanosarcina mazei populations from Columbia River sediment. The Isme Journal. PMID 25756680 DOI: 10.1038/Ismej.2015.31 |
0.488 |
|
| 2015 |
Paver SF, Youngblut ND, Whitaker RJ, Kent AD. Phytoplankton succession affects the composition of Polynucleobacter subtypes in humic lakes. Environmental Microbiology. 17: 816-28. PMID 24912130 DOI: 10.1111/1462-2920.12529 |
0.37 |
|
| 2014 |
Childs LM, England WE, Young MJ, Weitz JS, Whitaker RJ. CRISPR-induced distributed immunity in microbial populations. Plos One. 9: e101710. PMID 25000306 DOI: 10.1371/Journal.Pone.0101710 |
0.433 |
|
| 2014 |
Krause DJ, Didelot X, Cadillo-Quiroz H, Whitaker RJ. Recombination shapes genome architecture in an organism from the archaeal domain. Genome Biology and Evolution. 6: 170-8. PMID 24391154 DOI: 10.1093/Gbe/Evu003 |
0.673 |
|
| 2014 |
Benedict MN, Henriksen JR, Metcalf WW, Whitaker RJ, Price ND. ITEP: An integrated toolkit for exploration of microbial pan-genomes Bmc Genomics. 15. PMID 24387194 DOI: 10.1186/1471-2164-15-8 |
0.416 |
|
| 2014 |
Childs LM, England WE, Young MJ, Weitz JS, Whitaker RJ. Host populations exhibit periods of different coevolutionary dynamics. Plos One. DOI: 10.1371/Journal.Pone.0101710.G002 |
0.341 |
|
| 2013 |
England WE, Whitaker RJ. Evolutionary causes and consequences of diversified CRISPR immune profiles in natural populations. Biochemical Society Transactions. 41: 1431-6. PMID 24256233 DOI: 10.1042/Bst20130243 |
0.419 |
|
| 2013 |
Zhang C, Cooper TE, Krause DJ, Whitaker RJ. Augmenting the genetic toolbox for Sulfolobus islandicus with a stringent positive selectable marker for agmatine prototrophy. Applied and Environmental Microbiology. 79: 5539-49. PMID 23835176 DOI: 10.1128/Aem.01608-13 |
0.412 |
|
| 2013 |
Held NL, Herrera A, Whitaker RJ. Reassortment of CRISPR repeat-spacer loci in Sulfolobus islandicus. Environmental Microbiology. 15: 3065-76. PMID 23701169 DOI: 10.1111/1462-2920.12146 |
0.486 |
|
| 2013 |
Zhang C, Krause DJ, Whitaker RJ. Sulfolobus islandicus: a model system for evolutionary genomics. Biochemical Society Transactions. 41: 458-62. PMID 23356328 DOI: 10.1042/Bst20120338 |
0.45 |
|
| 2013 |
Youngblut ND, Shade A, Read JS, McMahon KD, Whitaker RJ. Lineage-specific responses of microbial communities to environmental change. Applied and Environmental Microbiology. 79: 39-47. PMID 23064335 DOI: 10.1128/Aem.02226-12 |
0.394 |
|
| 2012 |
Childs LM, Held NL, Young MJ, Whitaker RJ, Weitz JS. Multiscale model of CRISPR-induced coevolutionary dynamics: diversification at the interface of Lamarck and Darwin. Evolution; International Journal of Organic Evolution. 66: 2015-29. PMID 22759281 DOI: 10.1111/J.1558-5646.2012.01595.X |
0.395 |
|
| 2012 |
Shade A, Read JS, Youngblut ND, Fierer N, Knight R, Kratz TK, Lottig NR, Roden EE, Stanley EH, Stombaugh J, Whitaker RJ, Wu CH, McMahon KD. Lake microbial communities are resilient after a whole-ecosystem disturbance. The Isme Journal. 6: 2153-67. PMID 22739495 DOI: 10.1038/Ismej.2012.56 |
0.304 |
|
| 2012 |
Zhang C, Whitaker RJ. A broadly applicable gene knockout system for the thermoacidophilic archaeon Sulfolobus islandicus based on simvastatin selection. Microbiology (Reading, England). 158: 1513-22. PMID 22461488 DOI: 10.1099/Mic.0.058289-0 |
0.4 |
|
| 2012 |
Cadillo-Quiroz H, Didelot X, Held NL, Herrera A, Darling A, Reno ML, Krause DJ, Whitaker RJ. Patterns of gene flow define species of thermophilic Archaea. Plos Biology. 10: e1001265. PMID 22363207 DOI: 10.1371/Journal.Pbio.1001265 |
0.681 |
|
| 2010 |
Held NL, Herrera A, Cadillo-Quiroz H, Whitaker RJ. CRISPR associated diversity within a population of Sulfolobus islandicus. Plos One. 5. PMID 20927396 DOI: 10.1371/Journal.Pone.0012988 |
0.665 |
|
| 2010 |
Milferstedt K, Youngblut ND, Whitaker RJ. Spatial structure and persistence of methanogen populations in humic bog lakes. The Isme Journal. 4: 764-76. PMID 20182522 DOI: 10.1038/Ismej.2010.7 |
0.384 |
|
| 2009 |
Whitaker RJ. Evolution: spatial scaling of microbial interactions. Current Biology : Cb. 19: R954-6. PMID 19889374 DOI: 10.1016/J.Cub.2009.09.035 |
0.301 |
|
| 2009 |
Reno ML, Held NL, Fields CJ, Burke PV, Whitaker RJ. Biogeography of the Sulfolobus islandicus pan-genome. Proceedings of the National Academy of Sciences of the United States of America. 106: 8605-10. PMID 19435847 DOI: 10.1073/Pnas.0808945106 |
0.497 |
|
| 2009 |
Held NL, Whitaker RJ. Viral biogeography revealed by signatures in Sulfolobus islandicus genomes. Environmental Microbiology. 11: 457-66. PMID 19196276 DOI: 10.1111/J.1462-2920.2008.01784.X |
0.473 |
|
| 2008 |
Green JL, Bohannan BJ, Whitaker RJ. Microbial biogeography: from taxonomy to traits. Science (New York, N.Y.). 320: 1039-43. PMID 18497288 DOI: 10.1126/Science.1153475 |
0.598 |
|
| 2007 |
Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF. Genome dynamics in a natural archaeal population. Proceedings of the National Academy of Sciences of the United States of America. 104: 1883-8. PMID 17267615 DOI: 10.1073/Pnas.0604851104 |
0.494 |
|
| 2006 |
Whitaker RJ. Allopatric origins of microbial species. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 1975-84. PMID 17062415 DOI: 10.1098/Rstb.2006.1927 |
0.465 |
|
| 2006 |
Whitaker RJ, Banfield JF. Population genomics in natural microbial communities. Trends in Ecology & Evolution. 21: 508-16. PMID 16859806 DOI: 10.1016/J.Tree.2006.07.001 |
0.505 |
|
| 2005 |
Whitaker RJ, Grogan DW, Taylor JW. Recombination shapes the natural population structure of the hyperthermophilic archaeon Sulfolobus islandicus. Molecular Biology and Evolution. 22: 2354-61. PMID 16093568 DOI: 10.1093/Molbev/Msi233 |
0.548 |
|
| 2005 |
Whitaker RJ, Banfield JF. Population dynamics through the lens of extreme environments Reviews in Mineralogy and Geochemistry. 59: 259-277. DOI: 10.2138/Rmg.2005.59.11 |
0.355 |
|
| 2005 |
Banfield JF, Tyson GW, Allen EE, Whitaker RJ. The search for a molecular-level understanding of the processes that underpin the Earth's biogeochemical cycles Reviews in Mineralogy and Geochemistry. 59: 1-7. DOI: 10.2138/Rmg.2005.59.1 |
0.436 |
|
| 2003 |
Whitaker RJ, Grogan DW, Taylor JW. Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science (New York, N.Y.). 301: 976-8. PMID 12881573 DOI: 10.1126/Science.1086909 |
0.537 |
|
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