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Anurag Sethi, Ph.D. - Publications

Affiliations: 
2008 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Prediction of Protein Structure and Function
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang J, Lee D, Dhiman V, Jiang P, Xu J, McGillivray P, Yang H, Liu J, Meyerson W, Clarke D, Gu M, Li S, Lou S, Xu J, Lochovsky L, ... ... Sethi A, et al. An integrative ENCODE resource for cancer genomics. Nature Communications. 11: 3696. PMID 32728046 DOI: 10.1038/S41467-020-14743-W  0.316
2016 Clarke D, Sethi A, Li S, Kumar S, Chang RW, Chen J, Gerstein M. Identifying Allosteric Hotspots with Dynamics: Application to Inter- and Intra-species Conservation. Structure (London, England : 1993). PMID 27066750 DOI: 10.1016/J.Str.2016.03.008  0.403
2016 Yan KK, Wang D, Sethi A, Muir P, Kitchen R, Cheng C, Gerstein M. Cross-Disciplinary Network Comparison: Matchmaking Between Hairballs. Cell Systems. 2: 147-157. PMID 27047991 DOI: 10.1016/J.Cels.2016.02.014  0.317
2015 Sethi A, Clarke D, Chen J, Kumar S, Galeev TR, Regan L, Gerstein M. Reads meet rotamers: structural biology in the age of deep sequencing. Current Opinion in Structural Biology. 35: 125-134. PMID 26658741 DOI: 10.1016/J.Sbi.2015.11.003  0.358
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Sethi A, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424  0.307
2014 Bautista CAL, Sethi A, Tian J, Goldstein B, Wilson B, S G. Molecular Mechanism of Interfacial Adsorption of Disordered Cytoplasmic Tail of Immune Receptors to Membrane Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.2716  0.349
2013 Jung J, Sethi A, Gaiotto T, Han JJ, Jeoh T, Gnanakaran S, Goodwin PM. Binding and movement of individual Cel7A cellobiohydrolases on crystalline cellulose surfaces revealed by single-molecule fluorescence imaging. The Journal of Biological Chemistry. 288: 24164-72. PMID 23818525 DOI: 10.1074/Jbc.M113.455758  0.302
2013 Gao D, Chundawat SP, Sethi A, Balan V, Gnanakaran S, Dale BE. Increased enzyme binding to substrate is not necessary for more efficient cellulose hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 110: 10922-7. PMID 23784776 DOI: 10.1073/Pnas.1213426110  0.338
2013 Sethi A, Tian J, Derdeyn CA, Korber B, Gnanakaran S. A mechanistic understanding of allosteric immune escape pathways in the HIV-1 envelope glycoprotein. Plos Computational Biology. 9: e1003046. PMID 23696718 DOI: 10.1371/Journal.Pcbi.1003046  0.323
2013 Tian J, Sethi A, Swanson BI, Goldstein B, Gnanakaran S. Taste of sugar at the membrane: thermodynamics and kinetics of the interaction of a disaccharide with lipid bilayers. Biophysical Journal. 104: 622-32. PMID 23442913 DOI: 10.1016/J.Bpj.2012.12.011  0.317
2012 Sethi A, Tian J, Vu DM, Gnanakaran S. Identification of minimally interacting modules in an intrinsically disordered protein. Biophysical Journal. 103: 748-57. PMID 22947936 DOI: 10.1016/J.Bpj.2012.06.052  0.333
2012 Asztalos A, Daniels M, Sethi A, Shen T, Langan P, Redondo A, Gnanakaran S. A coarse-grained model for synergistic action of multiple enzymes on cellulose. Biotechnology For Biofuels. 5: 55. PMID 22853643 DOI: 10.1186/1754-6834-5-55  0.306
2011 Sethi A, Goldstein B, Gnanakaran S. Quantifying intramolecular binding in multivalent interactions: a structure-based synergistic study on Grb2-Sos1 complex. Plos Computational Biology. 7: e1002192. PMID 22022247 DOI: 10.1371/Journal.Pcbi.1002192  0.375
2011 Sethi A, Vu D, Gnanakaran S. Conformational and Spectroscopic Characterization of Intrinsically Disordered Regions in Proteins Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.283  0.326
2011 Sethi A, Derdeyn C, Korber B, Gnanakaran S. Network Analysis of the Communication Pathways in HIV-1 Envelope Proteins For Mechanistic Understanding of Immune Escape Biophysical Journal. 100: 227a-228a. DOI: 10.1016/J.Bpj.2010.12.1456  0.328
2010 Black Pyrkosz A, Eargle J, Sethi A, Luthey-Schulten Z. Exit strategies for charged tRNA from GluRS. Journal of Molecular Biology. 397: 1350-71. PMID 20156451 DOI: 10.1016/J.Jmb.2010.02.003  0.566
2009 Sarkar K, Meister K, Sethi A, Gruebele M. Fast folding of an RNA tetraloop on a rugged energy landscape detected by a stacking-sensitive probe. Biophysical Journal. 97: 1418-27. PMID 19720030 DOI: 10.1016/J.Bpj.2009.06.035  0.343
2009 Sethi A, Eargle J, Black AA, Luthey-Schulten Z. Dynamical networks in tRNA:protein complexes. Proceedings of the National Academy of Sciences of the United States of America. 106: 6620-5. PMID 19351898 DOI: 10.1073/Pnas.0810961106  0.745
2008 Roberts E, Sethi A, Montoya J, Woese CR, Luthey-Schulten Z. Molecular signatures of ribosomal evolution. Proceedings of the National Academy of Sciences of the United States of America. 105: 13953-8. PMID 18768810 DOI: 10.1073/Pnas.0804861105  0.676
2008 Eargle J, Black AA, Sethi A, Trabuco LG, Luthey-Schulten Z. Dynamics of Recognition between tRNA and elongation factor Tu. Journal of Molecular Biology. 377: 1382-405. PMID 18336835 DOI: 10.1016/J.Jmb.2008.01.073  0.758
2007 Amaro RE, Sethi A, Myers RS, Davisson VJ, Luthey-Schulten ZA. A network of conserved interactions regulates the allosteric signal in a glutamine amidotransferase. Biochemistry. 46: 2156-73. PMID 17261030 DOI: 10.1021/Bi061708E  0.68
2005 O'Donoghue P, Sethi A, Woese CR, Luthey-Schulten ZA. The evolutionary history of Cys-tRNACys formation. Proceedings of the National Academy of Sciences of the United States of America. 102: 19003-8. PMID 16380427 DOI: 10.1073/Pnas.0509617102  0.744
2005 Sethi A, O'Donoghue P, Luthey-Schulten Z. Evolutionary profiles from the QR factorization of multiple sequence alignments. Proceedings of the National Academy of Sciences of the United States of America. 102: 4045-50. PMID 15741270 DOI: 10.1073/Pnas.0409715102  0.703
2002 Dhawan RD, Joseph S, Sethi A, Lala AK. Purification and characterization of a short insect toxin from the venom of the scorpion Buthus tamulus. Febs Letters. 528: 261-6. PMID 12297317 DOI: 10.1016/S0014-5793(02)03326-4  0.343
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