| Year |
Citation |
Score |
| 2022 |
Barnaba TJ, Gangiredla J, Mammel MK, Lacher DW, Tartera C. Draft Genome Sequences of 18 Streptococcus Strains Isolated from Live Dietary Supplements and Cultured Food Products. Microbiology Resource Announcements. 11: e0026622. PMID 35616377 DOI: 10.1128/mra.00266-22 |
0.401 |
|
| 2022 |
Barnaba TJ, Gangiredla J, Mammel MK, Lacher DW, Tartera C. Draft Genome Sequences of Nine Strains and Two Strains Isolated from Live Dietary Supplements and a Cultured Food Product. Microbiology Resource Announcements. 11: e0090821. PMID 35023776 DOI: 10.1128/mra.00908-21 |
0.399 |
|
| 2021 |
Henderson ST, Singh P, Knupp D, Lacher DW, Abu-Ali GS, Rudrik JT, Manning SD. Variability in the Occupancy of O157 Integration Sites by Shiga Toxin-Encoding Prophages. Toxins. 13. PMID 34206386 DOI: 10.3390/toxins13070433 |
0.784 |
|
| 2020 |
Harrison LM, Lacher DW, Mammel MK, Leonard SR. Comparative Transcriptomics of Shiga Toxin-Producing and Commensal and Cytokine Responses in Colonic Epithelial Cell Culture Infections. Frontiers in Cellular and Infection Microbiology. 10: 575630. PMID 33194815 DOI: 10.3389/fcimb.2020.575630 |
0.476 |
|
| 2020 |
Burall LS, Sepehri S, Srinivasan D, Grim CJ, Lacher DW, Ferguson M, Nambiar R, Datta AR. Development and validation of a qPCR method for species verification and serogroup determination of Listeria monocytogenes isolates. Journal of Food Protection. PMID 32977330 DOI: 10.4315/JFP-20-178 |
0.334 |
|
| 2020 |
Lacher DW, Mammel MK, Gangiredla J, Gebru ST, Barnaba TJ, Majowicz SA, Dudley EG. Draft Genome Sequences of Isolates of Diverse Host Origin from the E. coli Reference Center at Penn State University. Microbiology Resource Announcements. 9. PMID 32972949 DOI: 10.1128/MRA.01005-20 |
0.446 |
|
| 2019 |
Cookson AL, Lacher DW, Scheutz F, Wilkinson DA, Biggs PJ, Marshall JC, Brightwell G. gndDb, a Database of Partial Sequences To Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing. Microbiology Resource Announcements. 8. PMID 31416858 DOI: 10.1128/MRA.00476-19 |
0.38 |
|
| 2019 |
Ball TA, Monte DF, Aidara-Kane A, Matheu-Alvarez J, Ru H, Thakur S, Horovitz J, Ejobi F, Lacher DW, Fedorka-Cray PJ. Phenotypic and Genotypic Characterization of Escherichia coli and Salmonella enterica from Dairy Cattle Farms in the Wakiso District, Uganda: A Cross-Sectional Study. Foodborne Pathogens and Disease. 16: 54-59. PMID 30601032 DOI: 10.1089/Fpd.2018.2528 |
0.462 |
|
| 2018 |
Patel IR, Gangiredla J, Mammel MK, Lampel KA, Elkins CA, Lacher DW. Draft Genome Sequences of the Escherichia coli Reference (ECOR) Collection. Microbiology Resource Announcements. 7. PMID 30533715 DOI: 10.1128/MRA.01133-18 |
0.492 |
|
| 2018 |
Patel IR, Gangiredla J, Lacher DW, Mammel MK, Bagi L, Baranzoni GM, Fratamico PM, Roberts EL, DebROY C, Lindsey RL, V Stoneburg D, Martin H, Smith P, Strockbine NA, Elkins CA, et al. Interlaboratory Evaluation of the U.S. Food and Drug Administration Escherichia coli Identification Microarray for Profiling Shiga Toxin-Producing Escherichia coli. Journal of Food Protection. 1275-1282. PMID 29985068 DOI: 10.4315/0362-028X.Jfp-18-052 |
0.606 |
|
| 2018 |
Gangiredla J, Barnaba TJ, Mammel MK, Lacher DW, Elkins CA, Lampel KA, Whitehouse CA, Tartera C. Fifty-Six Draft Genome Sequences of 10 Lactobacillus Species from 22 Commercial Dietary Supplements. Genome Announcements. 6. PMID 29954914 DOI: 10.1128/Genomea.00621-18 |
0.38 |
|
| 2018 |
Barnaba TJ, Gangiredla J, Mammel MK, Lacher DW, Elkins CA, Lampel KA, Whitehouse CA, Tartera C. Draft Genome Sequences of Bifidobacterium Strains Isolated from Dietary Supplements and Cultured Food Products. Genome Announcements. 6. PMID 29954907 DOI: 10.1128/Genomea.00610-18 |
0.461 |
|
| 2018 |
Gangiredla J, Mammel MK, Barnaba TJ, Tartera C, Gebru ST, Patel IR, Leonard SR, Kotewicz ML, Lampel KA, Elkins CA, Lacher DW. Draft Genome Sequences of Escherichia albertii, Escherichia fergusonii, and Strains Belonging to Six Cryptic Lineages of Escherichia spp. Genome Announcements. 6. PMID 29724828 DOI: 10.1128/Genomea.00271-18 |
0.566 |
|
| 2017 |
Gangiredla J, Mammel MK, Barnaba TJ, Tartera C, Gebru ST, Patel IR, Leonard SR, Kotewicz ML, Lampel KA, Elkins CA, Lacher DW. Species-Wide Collection of Escherichia coli Isolates for Examination of Genomic Diversity. Genome Announcements. 5. PMID 29242221 DOI: 10.1128/Genomea.01321-17 |
0.533 |
|
| 2017 |
Feng PCH, Delannoy S, Lacher DW, Bosilevac JM, Fach P, Beutin L. Characterization of Shiga toxin-producing Escherichia coli strains of O91 serogroup isolated from food and environmental samples. Applied and Environmental Microbiology. PMID 28687651 DOI: 10.1128/Aem.01231-17 |
0.611 |
|
| 2017 |
Kraft AL, Lacher DW, Shelver WL, Sherwood JS, Bergholz TM. Comparison of Immunomagnetic Separation Beads for Detection of Six Non-O157 Shiga Toxin-Producing Escherichia coli serogroups in Different Matrices. Letters in Applied Microbiology. PMID 28656639 DOI: 10.1111/Lam.12771 |
0.735 |
|
| 2017 |
Feng P, Delannoy S, Lacher DW, Bosilevac JM, Fach P. Characterization and Virulence Potential of Serogroup O113 Shiga Toxin-Producing Escherichia coli Strains Isolated from Beef and Cattle in the United States. Journal of Food Protection. 383-391. PMID 28199145 DOI: 10.4315/0362-028X.Jfp-16-325 |
0.615 |
|
| 2016 |
Lacher DW, Gangiredla J, Patel I, Elkins CA, Feng PC. Use of the Escherichia coli Identification Microarray for Characterizing the Health Risks of Shiga Toxin-Producing Escherichia coli Isolated from Foods. Journal of Food Protection. 79: 1656-1662. PMID 28221838 DOI: 10.4315/0362-028X.Jfp-16-176 |
0.61 |
|
| 2016 |
Leonard SR, Mammel MK, Lacher DW, Elkins CA. Strain-Level Discrimination of Shiga Toxin-Producing Escherichia coli in Spinach Using Metagenomic Sequencing. Plos One. 11: e0167870. PMID 27930729 DOI: 10.1371/Journal.Pone.0167870 |
0.586 |
|
| 2016 |
Hazen TH, Leonard SR, Lampel KA, Lacher DW, Maurelli AT, Rasko DA. Investigating the relatedness of enteroinvasive Escherichia coli to other E. coli and Shigella using comparative genomics. Infection and Immunity. PMID 27271741 DOI: 10.1128/Iai.00350-16 |
0.511 |
|
| 2016 |
Leonard SR, Mammel MK, Rasko DA, Lacher DW. Hybrid Shiga Toxin-producing and Enterotoxigenic Escherichia species Cryptic Lineage 1 Strain 7v Harbors a Hybrid Plasmid. Applied and Environmental Microbiology. PMID 27208138 DOI: 10.1128/Aem.01129-16 |
0.606 |
|
| 2016 |
Patel IR, Gangiredla J, Lacher DW, Mammel MK, Jackson SA, Lampel KA, Elkins CA. FDA-Escherichia coli Identification (FDA-ECID) Microarray: A Pan-Genome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny. Applied and Environmental Microbiology. PMID 27037122 DOI: 10.1128/Aem.04077-15 |
0.598 |
|
| 2015 |
Gray MD, Leonard SR, Lacher DW, Lampel KA, Alam MT, Morris JG, Ali A, LaBreck PT, Maurelli AT. Stx-Producing Shigella Species From Patients in Haiti: An Emerging Pathogen With the Potential for Global Spread. Open Forum Infectious Diseases. 2: ofv134. PMID 26484357 DOI: 10.1093/Ofid/Ofv134 |
0.413 |
|
| 2015 |
Leonard SR, Mammel MK, Lacher DW, Elkins CA. Application of Metagenomic Sequencing to Food Safety: Detection of Shiga Toxin-Producing Escherichia coli on Fresh Bagged Spinach. Applied and Environmental Microbiology. 81: 8183-91. PMID 26386062 DOI: 10.1128/Aem.02601-15 |
0.404 |
|
| 2015 |
Leonard SR, Lacher DW, Lampel KA. Acquisition of the lac operon by Salmonella enterica. Bmc Microbiology. 15: 173. PMID 26303940 DOI: 10.1186/S12866-015-0511-8 |
0.489 |
|
| 2015 |
Hayford AE, Brown EW, Zhao S, Mammel MK, Gangiredla J, Abbott JW, Friedman SL, Ayers SL, Lewis JL, Lacher DW, McDermott P, Elkins CA. Genetic and Resistance Phenotypic Subtyping of Salmonella Saintpaul Isolates from Various Food Sources and Humans: Phylogenetic Concordance in Combinatory Analyses. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 26299886 DOI: 10.1016/J.Meegid.2015.08.022 |
0.506 |
|
| 2015 |
Gray MD, Lacher DW, Leonard SR, Abbott J, Zhao S, Lampel KA, Prothery E, Gouali M, Weill FX, Maurelli AT. Prevalence of Shiga toxin-producing Shigella species isolated from French travellers returning from the Caribbean: an emerging pathogen with international implications. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. PMID 25980352 DOI: 10.1016/J.Cmi.2015.05.006 |
0.547 |
|
| 2015 |
Singh P, Sha Q, Lacher DW, Del Valle J, Mosci RE, Moore JA, Scribner KT, Manning SD. Characterization of enteropathogenic and Shiga toxin-producing Escherichia coli in cattle and deer in a shared agroecosystem. Frontiers in Cellular and Infection Microbiology. 5: 29. PMID 25883908 DOI: 10.3389/Fcimb.2015.00029 |
0.556 |
|
| 2015 |
Leonard SR, Lacher DW, Lampel KA. Draft Genome Sequences of the Enteroinvasive Escherichia coli Strains M4163 and 4608-58. Genome Announcements. 3. PMID 25657266 DOI: 10.1128/Genomea.01395-14 |
0.631 |
|
| 2014 |
Springman AC, Lacher DW, Waymire EA, Wengert SL, Singh P, Zadoks RN, Davies HD, Manning SD. Pilus distribution among lineages of group b streptococcus: an evolutionary and clinical perspective. Bmc Microbiology. 14: 159. PMID 24943359 DOI: 10.1186/1471-2180-14-159 |
0.53 |
|
| 2014 |
Feng PC, Delannoy S, Lacher DW, Dos Santos LF, Beutin L, Fach P, Rivas M, Hartland EL, Paton AW, Guth BE. Genetic diversity and virulence potential of shiga toxin-producing Escherichia coli O113:H21 strains isolated from clinical, environmental, and food sources. Applied and Environmental Microbiology. 80: 4757-63. PMID 24858089 DOI: 10.1128/Aem.01182-14 |
0.614 |
|
| 2014 |
Lacher DW, Gangiredla J, Jackson SA, Elkins CA, Feng PC. Novel microarray design for molecular serotyping of shiga toxin- producing Escherichia coli strains isolated from fresh produce. Applied and Environmental Microbiology. 80: 4677-4682. PMID 24837388 DOI: 10.1128/Aem.01049-14 |
0.621 |
|
| 2014 |
Leonard SR, Lacher DW, Elkins CA, Jung CM. Draft Genome Sequence of the Multidrug-Resistant Escherichia coli Strain LR09, Isolated from a Wastewater Treatment Plant. Genome Announcements. 2. PMID 24699962 DOI: 10.1128/Genomea.00272-14 |
0.551 |
|
| 2013 |
Ramachandran P, Lacher DW, Pfeiler EA, Elkins CA. Development of a tiered multilocus sequence typing scheme for members of the Lactobacillus acidophilus complex Applied and Environmental Microbiology. 79: 7220-7228. PMID 24038697 DOI: 10.1128/Aem.02257-13 |
0.487 |
|
| 2013 |
Elkins CA, Kotewicz ML, Jackson SA, Lacher DW, Abu-Ali GS, Patel IR. Genomic paradigms for food-borne enteric pathogen analysis at the USFDA: case studies highlighting method utility, integration and resolution. Food Additives & Contaminants. Part a, Chemistry, Analysis, Control, Exposure & Risk Assessment. 30: 1422-36. PMID 23199033 DOI: 10.1080/19440049.2012.743192 |
0.743 |
|
| 2012 |
Feng PC, Keys C, Lacher DW, Beutin L, Bentancor A, Heuvelink A, Afset JE, Rumi V, Monday S. Clonal relations of atypical enteropathogenic Escherichia coli O157:H16 strains isolated from various sources from several countries. Fems Microbiology Letters. 337: 126-31. PMID 23020830 DOI: 10.1111/1574-6968.12017 |
0.643 |
|
| 2012 |
Contreras CA, Ochoa TJ, Ruiz J, Lacher DW, Durand D, DebRoy C, Lanata CF, Cleary TG. Genetic diversity of locus of enterocyte effacement genes of enteropathogenic Escherichia coli isolated from Peruvian children. Journal of Medical Microbiology. 61: 1114-20. PMID 22493278 DOI: 10.1099/Jmm.0.045443-0 |
0.382 |
|
| 2012 |
Jackson SA, Kotewicz ML, Patel IR, Lacher DW, Gangiredla J, Elkins CA. Rapid genomic-scale analysis of Escherichia coli O104:H4 by using high-resolution alternative methods to next-generation sequencing. Applied and Environmental Microbiology. 78: 1601-5. PMID 22210216 DOI: 10.1128/Aem.07464-11 |
0.61 |
|
| 2011 |
Neupane M, Abu-Ali GS, Mitra A, Lacher DW, Manning SD, Riordan JT. Shiga toxin 2 overexpression in Escherichia coli O157:H7 strains associated with severe human disease. Microbial Pathogenesis. 51: 466-70. PMID 21864671 DOI: 10.1016/J.Micpath.2011.07.009 |
0.798 |
|
| 2011 |
Hayford AE, Mammel MK, Lacher DW, Brown EW. Single nucleotide polymorphism (SNP)-based differentiation of Shigella isolates by pyrosequencing. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 1761-8. PMID 21839856 DOI: 10.1016/J.Meegid.2011.07.015 |
0.478 |
|
| 2011 |
Contreras CA, Ochoa TJ, Ruiz J, Lacher DW, Rivera FP, Saenz Y, Chea-Woo E, Zavaleta N, Gil AI, Lanata CF, Huicho L, Maves RC, Torres C, Debroy C, Cleary TG. Phylogenetic relationships of Shiga toxin-producing Escherichia coli isolated from Peruvian children. Journal of Medical Microbiology. 60: 639-46. PMID 21292859 DOI: 10.1099/Jmm.0.026666-0 |
0.565 |
|
| 2010 |
Steinsland H, Lacher DW, Sommerfelt H, Whittam TS. Ancestral lineages of human enterotoxigenic Escherichia coli. Journal of Clinical Microbiology. 48: 2916-24. PMID 20534806 DOI: 10.1128/Jcm.02432-09 |
0.703 |
|
| 2010 |
Feng PC, Keys C, Lacher D, Monday SR, Shelton D, Rozand C, Rivas M, Whittam T. Prevalence, characterization and clonal analysis of Escherichia coli O157: non-H7 serotypes that carry eae alleles. Fems Microbiology Letters. 308: 62-7. PMID 20487015 DOI: 10.1111/J.1574-6968.2010.01990.X |
0.733 |
|
| 2010 |
Abu-Ali GS, Ouellette LM, Henderson ST, Lacher DW, Riordan JT, Whittam TS, Manning SD. Increased adherence and expression of virulence genes in a lineage of Escherichia coli O157:H7 commonly associated with human infections. Plos One. 5: e10167. PMID 20422047 DOI: 10.1371/Journal.Pone.0010167 |
0.808 |
|
| 2010 |
Elkins CA, Mullis LB, Lacher DW, Jung CM. Single nucleotide polymorphism analysis of the major tripartite multidrug efflux pump of Escherichia coli: functional conservation in disparate animal reservoirs despite exposure to antimicrobial chemotherapy. Antimicrobial Agents and Chemotherapy. 54: 1007-15. PMID 20038628 DOI: 10.1128/Aac.01126-09 |
0.44 |
|
| 2010 |
Contreras CA, Ochoa TJ, Lacher DW, DebRoy C, Navarro A, Talledo M, Donnenberg MS, Ecker L, Gil AI, Lanata CF, Cleary TG. Allelic variability of critical virulence genes (eae, bfpA and perA) in typical and atypical enteropathogenic Escherichia coli in Peruvian children. Journal of Medical Microbiology. 59: 25-31. PMID 19797469 DOI: 10.1099/Jmm.0.013706-0 |
0.486 |
|
| 2009 |
Mora A, Blanco M, Yamamoto D, Dahbi G, Blanco JE, López C, Alonso MP, Vieira MA, Hernandes RT, Abe CM, Piazza RM, Lacher DW, Elias WP, Gomes TA, Blanco J. HeLa-cell adherence patterns and actin aggregation of enteropathogenic Escherichia coli (EPEC) and Shiga-toxin-producing E. coli (STEC) strains carrying different eae and tir alleles. International Microbiology : the Official Journal of the Spanish Society For Microbiology. 12: 243-51. PMID 20112229 DOI: 10.2436/20.1501.01.104 |
0.477 |
|
| 2009 |
Springman AC, Lacher DW, Wu G, Milton N, Whittam TS, Davies HD, Manning SD. Selection, recombination, and virulence gene diversity among group B streptococcal genotypes. Journal of Bacteriology. 191: 5419-27. PMID 19581371 DOI: 10.1128/Jb.00369-09 |
0.678 |
|
| 2009 |
Abu-Ali GS, Lacher DW, Wick LM, Qi W, Whittam TS. Genomic diversity of pathogenic Escherichia coli of the EHEC 2 clonal complex. Bmc Genomics. 10: 296. PMID 19575794 DOI: 10.1186/1471-2164-10-296 |
0.797 |
|
| 2008 |
Manning SD, Motiwala AS, Springman AC, Qi W, Lacher DW, Ouellette LM, Mladonicky JM, Somsel P, Rudrik JT, Dietrich SE, Zhang W, Swaminathan B, Alland D, Whittam TS. Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks. Proceedings of the National Academy of Sciences of the United States of America. 105: 4868-73. PMID 18332430 DOI: 10.1073/Pnas.0710834105 |
0.8 |
|
| 2007 |
Feng PC, Monday SR, Lacher DW, Allison L, Siitonen A, Keys C, Eklund M, Nagano H, Karch H, Keen J, Whittam TS. Genetic diversity among clonal lineages within Escherichia coli O157:H7 stepwise evolutionary model. Emerging Infectious Diseases. 13: 1701-6. PMID 18217554 DOI: 10.3201/Eid1311.070381 |
0.741 |
|
| 2007 |
Lacher DW, Steinsland H, Blank TE, Donnenberg MS, Whittam TS. Molecular evolution of typical enteropathogenic Escherichia coli: clonal analysis by multilocus sequence typing and virulence gene allelic profiling. Journal of Bacteriology. 189: 342-50. PMID 17098897 DOI: 10.1128/Jb.01472-06 |
0.743 |
|
| 2007 |
Alland D, Lacher DW, Hazbón MH, Motiwala AS, Qi W, Fleischmann RD, Whittam TS. Role of large sequence polymorphisms (LSPs) in generating genomic diversity among clinical isolates of Mycobacterium tuberculosis and the utility of LSPs in phylogenetic analysis. Journal of Clinical Microbiology. 45: 39-46. PMID 17079498 DOI: 10.1128/Jcm.02483-05 |
0.736 |
|
| 2006 |
Lacher DW, Steinsland H, Whittam TS. Allelic subtyping of the intimin locus (eae) of pathogenic Escherichia coli by fluorescent RFLP. Fems Microbiology Letters. 261: 80-7. PMID 16842363 DOI: 10.1111/J.1574-6968.2006.00328.X |
0.667 |
|
| 2005 |
Manning SD, Lacher DW, Davies HD, Foxman B, Whittam TS. DNA polymorphism and molecular subtyping of the capsular gene cluster of group B streptococcus. Journal of Clinical Microbiology. 43: 6113-6. PMID 16333106 DOI: 10.1128/Jcm.43.12.6113-6116.2005 |
0.592 |
|
| 2005 |
Elsheikha HM, Lacher DW, Mansfield LS. Phylogenetic relationships of Sarcocystis neurona of horses and opossums to other cyst-forming coccidia deduced from SSU rRNA gene sequences. Parasitology Research. 97: 345-57. PMID 16133298 DOI: 10.1007/S00436-005-1396-5 |
0.399 |
|
| 2005 |
Fitch BR, Sachen KL, Wilder SR, Burg MA, Lacher DW, Khalife WT, Whittam TS, Young VB. Genetic diversity of Campylobacter sp. isolates from retail chicken products and humans with gastroenteritis in Central Michigan. Journal of Clinical Microbiology. 43: 4221-4. PMID 16081984 DOI: 10.1128/Jcm.43.8.4221-4224.2005 |
0.634 |
|
| 2005 |
Wick LM, Qi W, Lacher DW, Whittam TS. Evolution of genomic content in the stepwise emergence of Escherichia coli O157:H7. Journal of Bacteriology. 187: 1783-91. PMID 15716450 DOI: 10.1128/Jb.187.5.1783-1791.2005 |
0.783 |
|
| 2005 |
Hyma KE, Lacher DW, Nelson AM, Bumbaugh AC, Janda JM, Strockbine NA, Young VB, Whittam TS. Evolutionary genetics of a new pathogenic Escherichia species: Escherichia albertii and related Shigella boydii strains. Journal of Bacteriology. 187: 619-28. PMID 15629933 DOI: 10.1128/Jb.187.2.619-628.2005 |
0.775 |
|
| 2004 |
Qi W, Lacher DW, Bumbaugh AC, Hyma KE, Ouellette LM, Large TM, Tarr CL, Whittam TS. EcMLST: An online database for multi locus sequence typing of pathogenic escherichia coli Proceedings - 2004 Ieee Computational Systems Bioinformatics Conference, Csb 2004. 520-521. |
0.754 |
|
| 2003 |
Blank TE, Lacher DW, Scaletsky IC, Zhong H, Whittam TS, Donnenberg MS. Enteropathogenic Escherichia coli O157 strains from Brazil. Emerging Infectious Diseases. 9: 113-5. PMID 12533292 DOI: 10.3201/Eid0901.020072 |
0.741 |
|
| 2002 |
Tarr CL, Large TM, Moeller CL, Lacher DW, Tarr PI, Acheson DW, Whittam TS. Molecular characterization of a serotype O121:H19 clone, a distinct Shiga toxin-producing clone of pathogenic Escherichia coli. Infection and Immunity. 70: 6853-9. PMID 12438362 DOI: 10.1128/Iai.70.12.6853-6859.2002 |
0.747 |
|
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