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Paul M. Berube, Ph.D. - Publications

Affiliations: 
2008 University of Washington, Seattle, Seattle, WA 
Area:
Environmental microbiology, microbial evolution, microbial ecology, sulfate reducer, methanogen, syntrophy, ammonia oxidation, symbiosis
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Berube PM, O'Keefe TJ, Rasmussen A, LeMaster T, Chisholm SW. Production and cross-feeding of nitrite within populations. Mbio. e0123623. PMID 37404012 DOI: 10.1128/mbio.01236-23  0.54
2023 Berta-Thompson JW, Thomas E, Cubillos-Ruiz A, Hackl T, Becker JW, Coe A, Biller SJ, Berube PM, Chisholm SW. Draft genomes of three closely related low light-adapted Prochlorococcus. Bmc Genomic Data. 24: 11. PMID 36829130 DOI: 10.1186/s12863-022-01103-4  0.6
2023 Hackl T, Laurenceau R, Ankenbrand MJ, Bliem C, Cariani Z, Thomas E, Dooley KD, Arellano AA, Hogle SL, Berube P, Leventhal GE, Luo E, Eppley JM, Zayed AA, Beaulaurier J, et al. Novel integrative elements and genomic plasticity in ocean ecosystems. Cell. 186: 47-62.e16. PMID 36608657 DOI: 10.1016/j.cell.2022.12.006  0.6
2022 Acker M, Hogle SL, Berube PM, Hackl T, Coe A, Stepanauskas R, Chisholm SW, Repeta DJ. Phosphonate production by marine microbes: Exploring new sources and potential function. Proceedings of the National Academy of Sciences of the United States of America. 119: e2113386119. PMID 35254902 DOI: 10.1073/pnas.2113386119  0.572
2022 Hogle SL, Hackl T, Bundy RM, Park J, Satinsky B, Hiltunen T, Biller S, Berube PM, Chisholm SW. Siderophores as an iron source for picocyanobacteria in deep chlorophyll maximum layers of the oligotrophic ocean. The Isme Journal. PMID 35241788 DOI: 10.1038/s41396-022-01215-w  0.547
2019 Pachiadaki MG, Brown JM, Brown J, Bezuidt O, Berube PM, Biller SJ, Poulton NJ, Burkart MD, La Clair JJ, Chisholm SW, Stepanauskas R. Charting the Complexity of the Marine Microbiome through Single-Cell Genomics. Cell. 179: 1623-1635.e11. PMID 31835036 DOI: 10.1016/J.Cell.2019.11.017  0.646
2019 Biller SJ, Berube PM, Dooley K, Williams M, Satinsky BM, Hackl T, Hogle SL, Coe A, Bergauer K, Bouman HA, Browning TJ, Corte D, Hassler C, Hulston D, Jacquot JE, et al. Publisher Correction: Marine microbial metagenomes sampled across space and time. Scientific Data. 6: 47. PMID 31113983 DOI: 10.1038/S41597-019-0054-1  0.52
2019 Berube PM, Rasmussen A, Braakman R, Stepanauskas R, Chisholm SW. Emergence of trait variability through the lens of nitrogen assimilation in . Elife. 8. PMID 30706847 DOI: 10.7554/Elife.41043  0.61
2018 Biller SJ, Berube PM, Dooley K, Williams M, Satinsky BM, Hackl T, Hogle SL, Coe A, Bergauer K, Bouman HA, Browning TJ, De Corte D, Hassler C, Hulston D, Jacquot JE, et al. Marine microbial metagenomes sampled across space and time. Scientific Data. 5: 180176. PMID 30179232 DOI: 10.1038/Sdata.2018.176  0.602
2018 Berube PM, Biller SJ, Hackl T, Hogle SL, Satinsky BM, Becker JW, Braakman R, Collins SB, Kelly L, Berta-Thompson J, Coe A, Bergauer K, Bouman HA, Browning TJ, De Corte D, et al. Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments. Scientific Data. 5: 180154. PMID 30179231 DOI: 10.1038/Sdata.2018.154  0.738
2018 Berube PM, Rasmussen A, Braakman R, Stepanauskas R, Chisholm SW. Author response: Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus Elife. DOI: 10.7554/Elife.41043.045  0.511
2017 Qin W, Amin SA, Lundeen RA, Heal KR, Martens-Habbena W, Turkarslan S, Urakawa H, Costa KC, Hendrickson EL, Wang T, Beck DA, Tiquia-Arashiro SM, Taub F, Holmes AD, Vajrala N, ... Berube PM, et al. Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations. The Isme Journal. PMID 29053148 DOI: 10.1038/Ismej.2017.186  0.695
2017 Read RW, Berube PM, Biller SJ, Neveux I, Cubillos-Ruiz A, Chisholm SW, Grzymski JJ. Nitrogen cost minimization is promoted by structural changes in the transcriptome of N-deprived Prochlorococcus cells. The Isme Journal. PMID 28585937 DOI: 10.1038/Ismej.2017.88  0.574
2015 Biller SJ, Berube PM, Lindell D, Chisholm SW. Prochlorococcus: the structure and function of collective diversity. Nature Reviews. Microbiology. 13: 13-27. PMID 25435307 DOI: 10.1038/Nrmicro3378  0.627
2015 Berube PM, Biller SJ, Kent AG, Berta-Thompson JW, Roggensack SE, Roache-Johnson KH, Ackerman M, Moore LR, Meisel JD, Sher D, Thompson LR, Campbell L, Martiny AC, Chisholm SW. Physiology and evolution of nitrate acquisition in Prochlorococcus. The Isme Journal. 9: 1195-207. PMID 25350156 DOI: 10.1038/Ismej.2014.211  0.638
2015 Berube PM, Coe A, Roggensack SE, Chisholm SW. Temporal dynamics of Prochlorococcus cells with the potential for nitrate assimilation in the subtropical Atlantic and Pacific oceans Limnology and Oceanography. DOI: 10.1002/Lno.10226  0.605
2014 Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Rocap G, Moore LR, Chisholm SW. Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Scientific Data. 1: 140034. PMID 25977791 DOI: 10.1038/Sdata.2014.34  0.736
2014 Becker JW, Berube PM, Follett CL, Waterbury JB, Chisholm SW, Delong EF, Repeta DJ. Closely related phytoplankton species produce similar suites of dissolved organic matter. Frontiers in Microbiology. 5: 111. PMID 24748874 DOI: 10.3389/Fmicb.2014.00111  0.595
2013 Malmstrom RR, Rodrigue S, Huang KH, Kelly L, Kern SE, Thompson A, Roggensack S, Berube PM, Henn MR, Chisholm SW. Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. The Isme Journal. 7: 184-98. PMID 22895163 DOI: 10.1038/Ismej.2012.89  0.737
2012 Berube PM, Stahl DA. The divergent AmoC3 subunit of ammonia monooxygenase functions as part of a stress response system in Nitrosomonas europaea. Journal of Bacteriology. 194: 3448-56. PMID 22544266 DOI: 10.1128/Jb.00133-12  0.549
2009 Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA. Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature. 461: 976-9. PMID 19794413 DOI: 10.1038/Nature08465  0.705
2009 Martiny AC, Kathuria S, Berube PM. Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes. Proceedings of the National Academy of Sciences of the United States of America. 106: 10787-92. PMID 19549842 DOI: 10.1073/Pnas.0902532106  0.523
2007 Stein LY, Arp DJ, Berube PM, Chain PS, Hauser L, Jetten MS, Klotz MG, Larimer FW, Norton JM, Op den Camp HJ, Shin M, Wei X. Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation. Environmental Microbiology. 9: 2993-3007. PMID 17991028 DOI: 10.1111/J.1462-2920.2007.01409.X  0.456
2007 Berube PM, Samudrala R, Stahl DA. Transcription of all amoC copies is associated with recovery of Nitrosomonas europaea from ammonia starvation. Journal of Bacteriology. 189: 3935-44. PMID 17384196 DOI: 10.1128/Jb.01861-06  0.543
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