David Parichy - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Aman AJ, Saunders LM, Carr AA, Srivatasan S, Eberhard C, Carrington B, Watkins-Chow D, Pavan WJ, Trapnell C, Parichy DM. Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin. Elife. 12. PMID 37695017 DOI: 10.7554/eLife.86670  0.342
2022 Gur D, Bain EJ, Johnson KR, Aman AJ, Pasolli HA, Flynn JD, Allen MC, Deheyn DD, Lee JC, Lippincott-Schwartz J, Parichy DM. Author Correction: In situ differentiation of iridophore crystallotypes underlies zebrafish stripe patterning. Nature Communications. 13: 4330. PMID 35882864 DOI: 10.1038/s41467-022-32152-z  0.333
2021 McCluskey BM, Liang Y, Lewis VM, Patterson LB, Parichy DM. Pigment pattern morphospace of Danio fishes: evolutionary diversification and mutational effects. Biology Open. PMID 34463758 DOI: 10.1242/bio.058814  0.769
2021 Huang D, Lewis VM, Foster TN, Toomey MB, Corbo JC, Parichy DM. Development and genetics of red coloration in the zebrafish relative . Elife. 10. PMID 34435950 DOI: 10.7554/eLife.70253  0.361
2021 Salis P, Roux N, Huang D, Marcionetti A, Mouginot P, Reynaud M, Salles O, Salamin N, Pujol B, Parichy DM, Planes S, Laudet V. Thyroid hormones regulate the formation and environmental plasticity of white bars in clownfishes. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34031155 DOI: 10.1073/pnas.2101634118  0.368
2021 Eom DS, Patterson LB, Bostic RR, Parichy DM. Immunoglobulin superfamily receptor junctional adhesion molecule 3 (Jam3) requirement for melanophore survival and patterning during formation of zebrafish stripes. Developmental Biology. PMID 33933422 DOI: 10.1016/j.ydbio.2021.04.007  0.777
2021 Parichy DM. Evolution of pigment cells and patterns: recent insights from teleost fishes. Current Opinion in Genetics & Development. 69: 88-96. PMID 33743392 DOI: 10.1016/j.gde.2021.02.006  0.379
2020 Gur D, Bain EJ, Johnson KR, Aman AJ, Pasoili HA, Flynn JD, Allen MC, Deheyn DD, Lee JC, Lippincott-Schwartz J, Parichy DM. In situ differentiation of iridophore crystallotypes underlies zebrafish stripe patterning. Nature Communications. 11: 6391. PMID 33319779 DOI: 10.1038/s41467-020-20088-1  0.338
2019 Patterson LB, Parichy DM. Zebrafish Pigment Pattern Formation: Insights into the Development and Evolution of Adult Form. Annual Review of Genetics. PMID 31509458 DOI: 10.1146/annurev-genet-112618-043741  0.802
2019 Saunders LM, Mishra AK, Aman AJ, Lewis VM, Toomey MB, Packer JS, Qiu X, McFaline-Figueroa JL, Corbo JC, Trapnell C, Parichy DM. Thyroid hormone regulates distinct paths to maturation in pigment cell lineages. Elife. 8. PMID 31140974 DOI: 10.7554/Elife.45181  0.322
2019 Lewis VM, Saunders LM, Larson TA, Bain EJ, Sturiale SL, Gur D, Chowdhury S, Flynn JD, Allen MC, Deheyn DD, Lee JC, Simon JA, Lippincott-Schwartz J, Raible DW, Parichy DM. Fate plasticity and reprogramming in genetically distinct populations of leucophores. Proceedings of the National Academy of Sciences of the United States of America. PMID 31138706 DOI: 10.1073/Pnas.1901021116  0.459
2019 Salis P, Lorin T, Lewis V, Rey C, Marcionetti A, Escande ML, Roux N, Besseau L, Salamin N, Sémon M, Parichy D, Volff JN, Laudet V. Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish. Pigment Cell & Melanoma Research. PMID 30633441 DOI: 10.1111/Pcmr.12766  0.387
2018 Spiewak JE, Bain EJ, Liu J, Kou K, Sturiale SL, Patterson LB, Diba P, Eisen JS, Braasch I, Ganz J, Parichy DM. Evolution of Endothelin signaling and diversification of adult pigment pattern in Danio fishes. Plos Genetics. 14: e1007538. PMID 30226839 DOI: 10.1371/Journal.Pgen.1007538  0.759
2018 Aman AJ, Fulbright AN, Parichy DM. Wnt/β-catenin regulates an ancient signaling network during zebrafish scale development. Elife. 7. PMID 30014845 DOI: 10.7554/eLife.37001  0.359
2018 Patterson LB, Parichy DM. Melanophores Tune Out the Noise to Make Stripes. Developmental Cell. 45: 544-545. PMID 29870715 DOI: 10.1016/j.devcel.2018.05.014  0.683
2017 Hur M, Gistelinck CA, Huber P, Lee J, Thompson MH, Monstad-Rios AT, Watson CJ, McMenamin SK, Willaert A, Parichy DM, Coucke P, Kwon RY. MicroCT-Based Phenomics in the Zebrafish Skeleton Reveals Virtues of Deep Phenotyping in a Distributed Organ System. Zebrafish. PMID 29173118 DOI: 10.1089/Zeb.2017.1540  0.718
2017 Hur M, Gistelinck CA, Huber P, Lee J, Thompson MH, Monstad-Rios AT, Watson CJ, McMenamin SK, Willaert A, Parichy DM, Coucke P, Kwon RY. microCT-based phenomics in the zebrafish skeleton reveals virtues of deep phenotyping in a distributed organ system. Elife. 6. PMID 28884682 DOI: 10.7554/Elife.26014  0.765
2017 Woodcock MR, Vaughn-Wolfe J, Elias A, Kump DK, Kendall KD, Timoshevskaya N, Timoshevskiy V, Perry DW, Smith JJ, Spiewak JE, Parichy DM, Voss SR. Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum. Scientific Reports. 7: 6. PMID 28127056 DOI: 10.1038/s41598-017-00059-1  0.5
2015 Eom DS, Bain EJ, Patterson LB, Grout ME, Parichy DM. Long-distance communication by specialized cellular projections during pigment pattern development and evolution. Elife. 4. PMID 26701906 DOI: 10.7554/Elife.12401  0.764
2015 Parichy DM, Spiewak JE. Origins of adult pigmentation: diversity in pigment stem cell lineages and implications for pattern evolution. Pigment Cell & Melanoma Research. 28: 31-50. PMID 25421288 DOI: 10.1111/pcmr.12332  0.49
2014 Patterson LB, Bain EJ, Parichy DM. Pigment cell interactions and differential xanthophore recruitment underlying zebrafish stripe reiteration and Danio pattern evolution. Nature Communications. 5: 5299. PMID 25374113 DOI: 10.1038/Ncomms6299  0.76
2014 McMenamin SK, Bain EJ, McCann AE, Patterson LB, Eom DS, Waller ZP, Hamill JC, Kuhlman JA, Eisen JS, Parichy DM. Thyroid hormone-dependent adult pigment cell lineage and pattern in zebrafish. Science (New York, N.Y.). 345: 1358-61. PMID 25170046 DOI: 10.1126/Science.1256251  0.806
2014 Inoue S, Kondo S, Parichy DM, Watanabe M. Tetraspanin 3c requirement for pigment cell interactions and boundary formation in zebrafish adult pigment stripes. Pigment Cell & Melanoma Research. 27: 190-200. PMID 24734316 DOI: 10.1111/pcmr.12192  0.338
2014 Hamada H, Watanabe M, Lau HE, Nishida T, Hasegawa T, Parichy DM, Kondo S. Involvement of Delta/Notch signaling in zebrafish adult pigment stripe patterning. Development (Cambridge, England). 141: 318-24. PMID 24306107 DOI: 10.1242/dev.099804  0.321
2013 Patterson LB, Parichy DM. Interactions with iridophores and the tissue environment required for patterning melanophores and xanthophores during zebrafish adult pigment stripe formation. Plos Genetics. 9: e1003561. PMID 23737760 DOI: 10.1371/Journal.Pgen.1003561  0.794
2013 McMenamin SK, Minchin JE, Gordon TN, Rawls JF, Parichy DM. Dwarfism and increased adiposity in the gh1 mutant zebrafish vizzini. Endocrinology. 154: 1476-87. PMID 23456361 DOI: 10.1210/en.2012-1734  0.734
2013 McMenamin SK, Parichy DM. Metamorphosis in teleosts. Current Topics in Developmental Biology. 103: 127-65. PMID 23347518 DOI: 10.1016/B978-0-12-385979-2.00005-8  0.768
2012 Eom DS, Inoue S, Patterson LB, Gordon TN, Slingwine R, Kondo S, Watanabe M, Parichy DM. Melanophore migration and survival during zebrafish adult pigment stripe development require the immunoglobulin superfamily adhesion molecule Igsf11. Plos Genetics. 8: e1002899. PMID 22916035 DOI: 10.1371/Journal.Pgen.1002899  0.806
2011 Budi EH, Patterson LB, Parichy DM. Post-embryonic nerve-associated precursors to adult pigment cells: genetic requirements and dynamics of morphogenesis and differentiation. Plos Genetics. 7: e1002044. PMID 21625562 DOI: 10.1371/Journal.Pgen.1002044  0.816
2010 Elizondo MR, Budi EH, Parichy DM. trpm7 regulation of in vivo cation homeostasis and kidney function involves stanniocalcin 1 and fgf23. Endocrinology. 151: 5700-9. PMID 20881241 DOI: 10.1210/En.2010-0853  0.735
2010 Larson TA, Gordon TN, Lau HE, Parichy DM. Defective adult oligodendrocyte and Schwann cell development, pigment pattern, and craniofacial morphology in puma mutant zebrafish having an alpha tubulin mutation. Developmental Biology. 346: 296-309. PMID 20692250 DOI: 10.1016/J.Ydbio.2010.07.035  0.372
2010 Curran K, Lister JA, Kunkel GR, Prendergast A, Parichy DM, Raible DW. Interplay between Foxd3 and Mitf regulates cell fate plasticity in the zebrafish neural crest. Developmental Biology. 344: 107-18. PMID 20460180 DOI: 10.1016/J.Ydbio.2010.04.023  0.379
2010 Budi EH, Patterson LB, Parichy DM. Morphogenesis of post-embryonic neural crest-derived pigment cell precursors revealed by time lapse imaging during zebrafish adult pigment pattern formation Developmental Biology. 344: 448. DOI: 10.1016/J.Ydbio.2010.05.145  0.8
2009 Lang MR, Patterson LB, Gordon TN, Johnson SL, Parichy DM. Basonuclin-2 requirements for zebrafish adult pigment pattern development and female fertility. Plos Genetics. 5: e1000744. PMID 19956727 DOI: 10.1371/Journal.Pgen.1000744  0.804
2009 Hultman KA, Budi EH, Teasley DC, Gottlieb AY, Parichy DM, Johnson SL. Defects in ErbB-dependent establishment of adult melanocyte stem cells reveal independent origins for embryonic and regeneration melanocytes. Plos Genetics. 5: e1000544. PMID 19578401 DOI: 10.1371/Journal.Pgen.1000544  0.784
2009 Parichy DM. Animal pigment pattern: an integrative model system for studying the development, evolution, and regeneration of form. Seminars in Cell & Developmental Biology. 20: 63-4. PMID 19146966 DOI: 10.1016/j.semcdb.2008.12.010  0.3
2008 Budi EH, Patterson LB, Parichy DM. Embryonic requirements for ErbB signaling in neural crest development and adult pigment pattern formation. Development (Cambridge, England). 135: 2603-14. PMID 18508863 DOI: 10.1242/Dev.019299  0.821
2008 Engeszer RE, Wang G, Ryan MJ, Parichy DM. Sex-specific perceptual spaces for a vertebrate basal social aggregative behavior. Proceedings of the National Academy of Sciences of the United States of America. 105: 929-33. PMID 18199839 DOI: 10.1073/Pnas.0708778105  0.305
2008 Budi E, Patterson L, McDonald E, Parichy DM. Embryonic requirement for erbb signaling during zebrafish adult pigment pattern development Developmental Biology. 319: 591. DOI: 10.1016/J.Ydbio.2008.05.493  0.802
2007 Engeszer RE, Patterson LB, Rao AA, Parichy DM. Zebrafish in the wild: a review of natural history and new notes from the field. Zebrafish. 4: 21-40. PMID 18041940 DOI: 10.1089/Zeb.2006.9997  0.688
2007 Mills MG, Nuckels RJ, Parichy DM. Deconstructing evolution of adult phenotypes: genetic analyses of kit reveal homology and evolutionary novelty during adult pigment pattern development of Danio fishes. Development (Cambridge, England). 134: 1081-90. PMID 17287252 DOI: 10.1242/Dev.02799  0.406
2007 Parichy DM. Homology and the evolution of novelty during Danio adult pigment pattern development. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 578-90. PMID 17094081 DOI: 10.1002/jez.b.21141  0.516
2007 Parichy DM, Reedy MV, Erickson CA. Regulation of Melanoblast Migration and Differentiation The Pigmentary System: Physiology and Pathophysiology: Second Edition. 108-139. DOI: 10.1002/9780470987100.ch5  0.627
2006 Parichy DM. Evolution of danio pigment pattern development. Heredity. 97: 200-10. PMID 16835593 DOI: 10.1038/sj.hdy.6800867  0.511
2006 Mills MG, Nuckels RJ, Parichy DM. Genetic analyses of adult pigment pattern development reveal homology and evolutionary novelty in Danio fishes Developmental Biology. 295: 420. DOI: 10.1016/J.Ydbio.2006.04.290  0.445
2005 Smith JJ, Kump DK, Walker JA, Parichy DM, Voss SR. A comprehensive expressed sequence tag linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in Ambystoma. Genetics. 171: 1161-71. PMID 16079226 DOI: 10.1534/genetics.105.046433  0.392
2005 Elizondo MR, Arduini BL, Paulsen J, MacDonald EL, Sabel JL, Henion PD, Cornell RA, Parichy DM. Defective skeletogenesis with kidney stone formation in dwarf zebrafish mutant for trpm7. Current Biology : Cb. 15: 667-71. PMID 15823540 DOI: 10.1016/J.Cub.2005.02.050  0.385
2005 Quigley IK, Manuel JL, Roberts RA, Nuckels RJ, Herrington ER, MacDonald EL, Parichy DM. Evolutionary diversification of pigment pattern in Danio fishes: differential fms dependence and stripe loss in D. albolineatus. Development (Cambridge, England). 132: 89-104. PMID 15563521 DOI: 10.1242/Dev.01547  0.358
2004 Quigley IK, Turner JM, Nuckels RJ, Manuel JL, Budi EH, MacDonald EL, Parichy DM. Pigment pattern evolution by differential deployment of neural crest and post-embryonic melanophore lineages in Danio fishes. Development (Cambridge, England). 131: 6053-69. PMID 15537688 DOI: 10.1242/Dev.01526  0.824
2004 Putta S, Smith JJ, Walker JA, Rondet M, Weisrock DW, Monaghan J, Samuels AK, Kump K, King DC, Maness NJ, Habermann B, Tanaka E, Bryant SV, Gardiner DM, Parichy DM, et al. From biomedicine to natural history research: EST resources for ambystomatid salamanders. Bmc Genomics. 5: 54. PMID 15310388 DOI: 10.1186/1471-2164-5-54  0.419
2003 Parichy DM, Turner JM. Zebrafish puma mutant decouples pigment pattern and somatic metamorphosis. Developmental Biology. 256: 242-57. PMID 12679100 DOI: 10.1016/S0012-1606(03)00015-0  0.534
2003 Parichy DM, Turner JM, Parker NB. Essential role for puma in development of postembryonic neural crest-derived cell lineages in zebrafish. Developmental Biology. 256: 221-41. PMID 12679099 DOI: 10.1016/S0012-1606(03)00016-2  0.501
2003 Parichy DM, Turner JM. Temporal and cellular requirements for Fms signaling during zebrafish adult pigment pattern development. Development (Cambridge, England). 130: 817-33. PMID 12538511 DOI: 10.1242/dev.00307  0.548
2002 Quigley IK, Parichy DM. Pigment pattern formation in zebrafish: a model for developmental genetics and the evolution of form. Microscopy Research and Technique. 58: 442-55. PMID 12242701 DOI: 10.1002/Jemt.10162  0.498
2001 Voss SR, Smith JJ, Gardiner DM, Parichy DM. Conserved vertebrate chromosome segments in the large salamander genome. Genetics. 158: 735-46. PMID 11404337  0.407
2001 Parichy DM. Homology and evolutionary novelty in the deployment of extracellular matrix molecules during pigment pattern formation in the salamanders Taricha torosa and T. rivularis (Salamandridae). The Journal of Experimental Zoology. 291: 13-24. PMID 11335913 DOI: 10.1002/jez.2  0.301
2000 Parichy DM, Mellgren EM, Rawls JF, Lopes SS, Kelsh RN, Johnson SL. Mutational analysis of endothelin receptor b1 (rose) during neural crest and pigment pattern development in the zebrafish Danio rerio. Developmental Biology. 227: 294-306. PMID 11071756 DOI: 10.1006/dbio.2000.9899  0.516
2000 Parichy DM, Ransom DG, Paw B, Zon LI, Johnson SL. An orthologue of the kit-related gene fms is required for development of neural crest-derived xanthophores and a subpopulation of adult melanocytes in the zebrafish, Danio rerio. Development (Cambridge, England). 127: 3031-44. PMID 10862741  0.543
1999 Parichy DM, Stigson M, Voss SR. Genetic analysis of steel and the PG-M/versican-encoding gene AxPG as candidates for the white (d) pigmentation mutant in the salamander Ambystoma mexicanum. Development Genes and Evolution. 209: 349-56. PMID 10370116 DOI: 10.1007/s004270050263  0.502
1998 Parichy DM. Experimental analysis of character coupling across a complex life cycle: pigment pattern metamorphosis in the tiger salamander, Ambystoma tigrinum tigrinum. Journal of Morphology. 237: 53-67. PMID 9642792 DOI: 10.1002/(SICI)1097-4687(199807)237:1<53::AID-JMOR5>3.0.CO;2-P  0.45
1996 Parichy DM. Salamander pigment patterns: how can they be used to study developmental mechanisms and their evolutionary transformation? The International Journal of Developmental Biology. 40: 871-84. PMID 8877461  0.426
1992 Parichy DM, Shaffer HB, Mangel M, McKinney ML, McNamara KJ. Heterochrony as a Unifying Theme in Evolution and Development Evolution. 46: 1252. DOI: 10.2307/2409775  0.533
1992 Parichy DM, Shaffer HB, Mangel M. HETEROCHRONY AS A UNIFYING THEME IN EVOLUTION AND DEVELOPMENT Evolution. 46: 1252-1254. DOI: 10.1111/J.1558-5646.1992.Tb00638.X  0.533
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