Amanda Larracuente - Publications

Affiliations: 
University of Rochester, Rochester, NY 

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Martí E, Larracuente AM. Genetic conflict and the origin of multigene families: implications for sex chromosome evolution. Proceedings. Biological Sciences. 290: 20231823. PMID 37909083 DOI: 10.1098/rspb.2023.1823  0.508
2023 Courret C, Larracuente AM. High levels of intra-strain structural variation in Drosophila simulans X pericentric heterochromatin. Genetics. 225. PMID 37768175 DOI: 10.1093/genetics/iyad176  0.461
2023 Sproul J, Hotaling S, Heckenhauer J, Powell A, Marshall D, Larracuente AM, Kelley J, Pauls SU, Frandsen PB. 600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges. Genome Research. PMID 37739812 DOI: 10.1101/gr.277387.122  0.461
2023 Courret C, Wei X, Larracuente AM. New perspectives on the causes and consequences of male meiotic drive. Current Opinion in Genetics & Development. 83: 102111. PMID 37704518 DOI: 10.1016/j.gde.2023.102111  0.516
2023 Courret C, Ogereau D, Gilbert C, Larracuente AM, Montchamp-Moreau C. The Evolutionary History of Drosophila simulans Y Chromosomes Reveals Molecular Signatures of Resistance to Sex Ratio Meiotic Drive. Molecular Biology and Evolution. 40. PMID 37401458 DOI: 10.1093/molbev/msad152  0.426
2022 Navarro-Dominguez B, Chang CH, Brand CL, Muirhead CA, Presgraves DC, Larracuente AM. Epistatic selection on a selfish supergene: drive, recombination, and genetic load. Elife. 11. PMID 35486424 DOI: 10.7554/eLife.78981  0.795
2022 Heckenhauer J, Frandsen PB, Sproul JS, Li Z, Paule J, Larracuente AM, Maughan PJ, Barker MS, Schneider JV, Stewart RJ, Pauls SU. Genome size evolution in the diverse insect order Trichoptera. Gigascience. 11. PMID 35217860 DOI: 10.1093/gigascience/giac011  0.51
2022 Chang CH, Gregory LE, Gordon KE, Meiklejohn CD, Larracuente AM. Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes. Elife. 11. PMID 34989337 DOI: 10.7554/eLife.75795  0.811
2021 Wei X, Eickbush DG, Speece I, Larracuente AM. Heterochromatin-dependent transcription of satellite DNAs in the female germline. Elife. 10. PMID 34259629 DOI: 10.7554/eLife.62375  0.365
2021 Herbette M, Wei X, Chang CH, Larracuente AM, Loppin B, Dubruille R. Distinct spermiogenic phenotypes underlie sperm elimination in the Segregation Distorter meiotic drive system. Plos Genetics. 17: e1009662. PMID 34228705 DOI: 10.1371/journal.pgen.1009662  0.782
2021 Hotaling S, Sproul JS, Heckenhauer J, Powell A, Larracuente AM, Pauls SU, Kelley JL, Frandsen PB. Long-reads are revolutionizing 20 years of insect genome sequencing. Genome Biology and Evolution. PMID 34152413 DOI: 10.1093/gbe/evab138  0.487
2021 Chakraborty M, Chang CH, Khost DE, Vedanayagam J, Adrion JR, Liao Y, Montooth KL, Meiklejohn CD, Larracuente AM, Emerson JJ. Evolution of genome structure in the species complex. Genome Research. PMID 33563718 DOI: 10.1101/gr.263442.120  0.755
2020 Negm S, Greenberg A, Larracuente AM, Sproul JS. RepeatProfiler: A pipeline for visualization and comparative analysis of repetitive DNA profiles. Molecular Ecology Resources. PMID 33277787 DOI: 10.1111/1755-0998.13305  0.461
2020 Price TAR, Windbichler N, Unckless RL, Sutter A, Runge JN, Ross PA, Pomiankowski A, Nuckolls NL, Montchamp-Moreau C, Mideo N, Martin OY, Manser A, Legros M, Larracuente AM, Holman L, et al. Resistance to natural and synthetic gene drive systems. Journal of Evolutionary Biology. PMID 32969551 DOI: 10.1111/jeb.13693  0.674
2020 Sproul JS, Khost DE, Eickbush DG, Negm S, Wei X, Wong I, Larracuente AM. Dynamic evolution of euchromatic satellites on the X chromosome in Drosophila melanogaster and the simulans clade. Molecular Biology and Evolution. PMID 32191304 DOI: 10.1093/molbev/msaa078  0.825
2019 Courret C, Chang CH, Wei KH, Montchamp-Moreau C, Larracuente AM. Meiotic drive mechanisms: lessons from . Proceedings. Biological Sciences. 286: 20191430. PMID 31640520 DOI: 10.1098/Rspb.2019.1430  0.819
2019 Chang CH, Chavan A, Palladino J, Wei X, Martins NMC, Santinello B, Chen CC, Erceg J, Beliveau BJ, Wu CT, Larracuente AM, Mellone BG. Islands of retroelements are major components of Drosophila centromeres. Plos Biology. 17: e3000241. PMID 31086362 DOI: 10.1371/Journal.Pbio.3000241  0.802
2018 Chang CH, Larracuente AM. Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Y Chromosome. Genetics. PMID 30420487 DOI: 10.1534/genetics.118.301765  0.845
2018 Fallon TR, Lower SE, Chang CH, Bessho-Uehara M, Martin GJ, Bewick AJ, Behringer M, Debat HJ, Wong I, Day JC, Suvorov A, Silva CJ, Stanger-Hall KF, Hall DW, Schmitz RJ, ... ... Larracuente AM, et al. Firefly genomes illuminate parallel origins of bioluminescence in beetles. Elife. 7. PMID 30324905 DOI: 10.7554/Elife.36495  0.798
2017 Khost DE, Eickbush DG, Larracuente AM. Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci in Drosophila melanogaster. Genome Research. PMID 28373483 DOI: 10.1101/gr.213512.116  0.815
2017 Chang CH, Larracuente AM. Genomic changes following the reversal of a Y chromosome to an autosome in Drosophila pseudoobscura. Evolution; International Journal of Organic Evolution. PMID 28322435 DOI: 10.1111/evo.13229  0.801
2016 Lindholm AK, Dyer KA, Firman RC, Fishman L, Forstmeier W, Holman L, Johannesson H, Knief U, Kokko H, Larracuente AM, Manser A, Montchamp-Moreau C, Petrosyan VG, Pomiankowski A, Presgraves DC, et al. The Ecology and Evolutionary Dynamics of Meiotic Drive. Trends in Ecology & Evolution. PMID 26920473 DOI: 10.1016/J.Tree.2016.02.001  0.794
2015 Hales KG, Korey CA, Larracuente AM, Roberts DM. Genetics on the Fly: A Primer on the Drosophila Model System. Genetics. 201: 815-42. PMID 26564900 DOI: 10.1534/genetics.115.183392  0.39
2015 Brand CL, Larracuente AM, Presgraves DC. Origin, evolution, and population genetics of the selfish Segregation Distorter gene duplication in European and African populations of Drosophila melanogaster. Evolution; International Journal of Organic Evolution. 69: 1271-83. PMID 25828399 DOI: 10.1111/Evo.12658  0.793
2015 Larracuente AM, Ferree PM. Simple method for fluorescence DNA in situ hybridization to squashed chromosomes. Journal of Visualized Experiments : Jove. 52288. PMID 25591075 DOI: 10.3791/52288  0.305
2015 Unckless RL, Larracuente AM, Clark AG. Sex-ratio meiotic drive and Y-linked resistance in Drosophila affinis. Genetics. 199: 831-40. PMID 25571899 DOI: 10.1534/Genetics.114.173948  0.722
2014 Larracuente AM, Clark AG. Recent selection on the Y-to-dot translocation in Drosophila pseudoobscura. Molecular Biology and Evolution. 31: 846-56. PMID 24390701 DOI: 10.1093/Molbev/Msu002  0.549
2013 Larracuente AM, Clark AG. Surprising differences in the variability of Y chromosomes in African and cosmopolitan populations of Drosophila melanogaster. Genetics. 193: 201-14. PMID 23086221 DOI: 10.1534/Genetics.112.146167  0.568
2012 Larracuente AM, Presgraves DC. The selfish Segregation Distorter gene complex of Drosophila melanogaster. Genetics. 192: 33-53. PMID 22964836 DOI: 10.1534/genetics.112.141390  0.709
2010 Larracuente AM, Noor MA, Clark AG. Translocation of Y-linked genes to the dot chromosome in Drosophila pseudoobscura. Molecular Biology and Evolution. 27: 1612-20. PMID 20147437 DOI: 10.1093/Molbev/Msq045  0.554
2010 Page DC, Hughes JF, Bellott DW, Mueller JL, Gill ME, Larracuente A, Graves T, Muzny D, Warren WC, Gibbs RA, Wilson RK, Skaletsky H. Reconstructing sex chromosome evolution Genome Biology. 11. DOI: 10.1186/Gb-2010-11-S1-I21  0.484
2009 Singh ND, Larracuente AM, Sackton TB, Clark AG. Comparative genomics on the drosophila phylogenetic tree Annual Review of Ecology, Evolution, and Systematics. 40: 459-480. DOI: 10.1146/Annurev.Ecolsys.110308.120214  0.822
2008 Larracuente AM, Sackton TB, Greenberg AJ, Wong A, Singh ND, Sturgill D, Zhang Y, Oliver B, Clark AG. Evolution of protein-coding genes in Drosophila. Trends in Genetics : Tig. 24: 114-23. PMID 18249460 DOI: 10.1016/J.Tig.2007.12.001  0.749
2008 Singh ND, Larracuente AM, Clark AG. Contrasting the efficacy of selection on the X and autosomes in Drosophila. Molecular Biology and Evolution. 25: 454-67. PMID 18083702 DOI: 10.1093/Molbev/Msm275  0.539
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.763
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